zinc finger
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G55340 |
| fragaria_vesca | FvH4_7g21531 |
| malus_domestica | MD01G1122100.v1.1 MD07G1191600.v1.1 |
| prunus_persica | Prupe.2G229600_v2.0.a1 Prupe.2G229700_v2.0.a1 |
| pyrus_communis | pycom01g14890 pycom07g18100 |
| rosa_chinensis | RchiOBHm_Chr1g0365851 |
| rosa_laevigata | RLG00000027386 |
| rosa_multiflora | Rmu_sc0023137.1_g000001 Rmu_sc0041703.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00290800 |
| rosa_rugosa | Rorug01G0325000 |
| rosa_samantha | Rh1AG334000 Rh1BG294600 Rh1CG311300 Rh1DG327000 |
| rosa_wichuraiana | Rw1G029630 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 62 |
| AccB1I | GGYRCC | 1 cut(s) | 2060 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1075, 1910 |
| AccIII | TCCGGA | 1 cut(s) | 322 |
| AciI | CCGC | 7 cut(s) | 136, 369, 397, 864, 906, 1998, 2130 |
| AclWI | GGATC | 3 cut(s) | 409, 1583, 1775 |
| AcsI | RAATTY | 3 cut(s) | 1105, 1202, 1225 |
| AcuI | CTGAAG | 5 cut(s) | 251, 897, 1371, 1692, 1878 |
| AcyI | GRCGYC | 1 cut(s) | 59 |
| AfaI | GTAC | 9 cut(s) | 1366, 1399, 1432, 1552, 1585, 1777, 1915, 1930, 1963 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 905, 1075, 1910 |
| AflII | CTTAAG | 1 cut(s) | 23 |
| AhlI | ACTAGT | 1 cut(s) | 2075 |
| AjiI | CACGTC | 4 cut(s) | 1482, 1674, 1860, 2118 |
| AjnI | CCWGG | 1 cut(s) | 744 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1354, 1386 |
| Alw21I | GWGCWC | 1 cut(s) | 2096 |
| Alw26I | GTCTC | 1 cut(s) | 1244 |
| AlwI | GGATC | 3 cut(s) | 409, 1583, 1775 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1439, 1811 |
| Aor13HI | TCCGGA | 1 cut(s) | 322 |
| AoxI | GGCC | 3 cut(s) | 113, 142, 1504 |
| ApeKI | GCWGC | 3 cut(s) | 861, 950, 953 |
| ApoI | RAATTY | 3 cut(s) | 1105, 1202, 1225 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 296, 328, 329, 361 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1145 |
| AspS9I | GGNCC | 4 cut(s) | 143, 325, 431, 1504 |
| AsuC2I | CCSGG | 1 cut(s) | 343 |
| AsuHPI | GGTGA | 8 cut(s) | 187, 454, 728, 1258, 1508, 1700, 1886, 2144 |
| AsuII | TTCGAA | 2 cut(s) | 192, 844 |
| AvaII | GGWCC | 2 cut(s) | 325, 431 |
| AxyI | CCTNAGG | 1 cut(s) | 110 |
| BanI | GGYRCC | 1 cut(s) | 2060 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1906, 1938 |
| BbsI | GAAGAC | 1 cut(s) | 1294 |
| Bbv12I | GWGCWC | 1 cut(s) | 2096 |
| BbvI | GCAGC | 3 cut(s) | 848, 962, 965 |
| BccI | CCATC | 6 cut(s) | 202, 302, 584, 971, 1246, 1515 |
| BceAI | ACGGC | 1 cut(s) | 1815 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 182, 216 |
| BciT130I | CCWGG | 1 cut(s) | 746 |
| BciVI | GTATCC | 2 cut(s) | 1076, 1998 |
| BcnI | CCSGG | 1 cut(s) | 343 |
| BcoDI | GTCTC | 1 cut(s) | 1244 |
| BcuI | ACTAGT | 1 cut(s) | 2075 |
| BfaI | CTAG | 5 cut(s) | 125, 254, 1265, 1568, 2076 |
| BfmI | CTRYAG | 7 cut(s) | 276, 1380, 1605, 1731, 1803, 1950, 2055 |
| BfrI | CTTAAG | 1 cut(s) | 23 |
| BfuI | GTATCC | 2 cut(s) | 1076, 1998 |
| BisI | GCNGC | 5 cut(s) | 137, 862, 865, 951, 954 |
| BlpI | GCTNAGC | 1 cut(s) | 957 |
| BlsI | GCNGC | 5 cut(s) | 138, 863, 866, 952, 955 |
| Bme1390I | CCNGG | 2 cut(s) | 343, 746 |
| Bme18I | GGWCC | 2 cut(s) | 325, 431 |
| BmgBI | CACGTC | 4 cut(s) | 1482, 1674, 1860, 2118 |
| BmgT120I | GGNCC | 4 cut(s) | 143, 325, 431, 1504 |
| BmiI | GGNNCC | 3 cut(s) | 145, 327, 2062 |
| BmrFI | CCNGG | 2 cut(s) | 343, 746 |
| BmrI | ACTGGG | 1 cut(s) | 693 |
| BmuI | ACTGGG | 1 cut(s) | 693 |
| BpiI | GAAGAC | 1 cut(s) | 1294 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 957 |
| Bpu14I | TTCGAA | 2 cut(s) | 192, 844 |
| BpuMI | CCSGG | 1 cut(s) | 343 |
| Bsa29I | ATCGAT | 1 cut(s) | 413 |
| BsaHI | GRCGYC | 1 cut(s) | 59 |
| BsaJI | CCNNGG | 4 cut(s) | 341, 696, 831, 966 |
| BsaWI | WCCGGW | 2 cut(s) | 322, 2063 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 723, 753 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 905, 1075, 1910 |
| Bse21I | CCTNAGG | 1 cut(s) | 110 |
| BseAI | TCCGGA | 1 cut(s) | 322 |
| BseBI | CCWGG | 1 cut(s) | 746 |
| BseCI | ATCGAT | 1 cut(s) | 413 |
| BseDI | CCNNGG | 4 cut(s) | 341, 696, 831, 966 |
| BseGI | GGATG | 4 cut(s) | 508, 790, 841, 1135 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 905, 1075, 1910 |
| BseMII | CTCAG | 4 cut(s) | 101, 180, 881, 1116 |
| BseRI | GAGGAG | 8 cut(s) | 154, 557, 560, 593, 1489, 1681, 1867, 2125 |
| BseXI | GCAGC | 3 cut(s) | 848, 962, 965 |
| BsgI | GTGCAG | 3 cut(s) | 624, 1329, 1332 |
| Bsh1285I | CGRYCG | 2 cut(s) | 347, 831 |
| BshFI | GGCC | 3 cut(s) | 115, 144, 1506 |
| BshNI | GGYRCC | 1 cut(s) | 2060 |
| BshVI | ATCGAT | 1 cut(s) | 413 |
| BsiEI | CGRYCG | 2 cut(s) | 347, 831 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2096 |
| BsiSI | CCGG | 3 cut(s) | 323, 343, 2064 |
| BslFI | GGGAC | 2 cut(s) | 1345, 2154 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 905, 1075, 1910 |
| BsmAI | GTCTC | 1 cut(s) | 1244 |
| BsmFI | GGGAC | 2 cut(s) | 1345, 2154 |
| BsmI | GAATGC | 2 cut(s) | 813, 2132 |
| BsnI | GGCC | 3 cut(s) | 115, 144, 1506 |
| Bsp119I | TTCGAA | 2 cut(s) | 192, 844 |
| Bsp1286I | GDGCHC | 1 cut(s) | 2096 |
| Bsp13I | TCCGGA | 1 cut(s) | 322 |
| Bsp143I | GATC | 5 cut(s) | 410, 414, 1267, 1588, 1780 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 957 |
| BspACI | CCGC | 7 cut(s) | 136, 369, 397, 864, 906, 1998, 2130 |
| BspANI | GGCC | 3 cut(s) | 115, 144, 1506 |
| BspCNI | CTCAG | 4 cut(s) | 102, 179, 882, 1117 |
| BspDI | ATCGAT | 1 cut(s) | 413 |
| BspEI | TCCGGA | 1 cut(s) | 322 |
| BspLI | GGNNCC | 3 cut(s) | 145, 327, 2062 |
| BspPI | GGATC | 3 cut(s) | 409, 1583, 1775 |
| BspT104I | TTCGAA | 2 cut(s) | 192, 844 |
| BspT107I | GGYRCC | 1 cut(s) | 2060 |
| BspTI | CTTAAG | 1 cut(s) | 23 |
| BssECI | CCNNGG | 4 cut(s) | 341, 696, 831, 966 |
| BssMI | GATC | 5 cut(s) | 410, 414, 1267, 1588, 1780 |
| BssNI | GRCGYC | 1 cut(s) | 59 |
| BssT1I | CCWWGG | 1 cut(s) | 966 |
| Bst2UI | CCWGG | 1 cut(s) | 746 |
| Bst4CI | ACNGT | 3 cut(s) | 999, 1448, 1954 |
| Bst6I | CTCTTC | 8 cut(s) | 154, 491, 548, 554, 560, 647, 668, 696 |
| BstACI | GRCGYC | 1 cut(s) | 59 |
| BstAFI | CTTAAG | 1 cut(s) | 23 |
| BstBI | TTCGAA | 2 cut(s) | 192, 844 |
| BstC8I | GCNNGC | 3 cut(s) | 774, 963, 2092 |
| BstDEI | CTNAG | 6 cut(s) | 110, 166, 242, 890, 957, 1125 |
| BstF5I | GGATG | 4 cut(s) | 508, 790, 841, 1135 |
| BstKTI | GATC | 5 cut(s) | 413, 417, 1270, 1591, 1783 |
| BstMAI | GTCTC | 1 cut(s) | 1244 |
| BstMBI | GATC | 5 cut(s) | 410, 414, 1267, 1588, 1780 |
| BstMCI | CGRYCG | 2 cut(s) | 347, 831 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 355, 962, 1733, 1808, 2127 |
| BstNI | CCWGG | 1 cut(s) | 746 |
| BstSCI | CCNGG | 2 cut(s) | 341, 744 |
| BstSFI | CTRYAG | 7 cut(s) | 276, 1380, 1605, 1731, 1803, 1950, 2055 |
| BstV1I | GCAGC | 3 cut(s) | 848, 962, 965 |
| BstV2I | GAAGAC | 1 cut(s) | 1294 |
| Bsu15I | ATCGAT | 1 cut(s) | 413 |
| Bsu36I | CCTNAGG | 1 cut(s) | 110 |
| BsuI | GTATCC | 2 cut(s) | 1076, 1998 |
| BsuRI | GGCC | 3 cut(s) | 115, 144, 1506 |
| BsuTUI | ATCGAT | 1 cut(s) | 413 |
| BtrI | CACGTC | 4 cut(s) | 1482, 1674, 1860, 2118 |
| BtsCI | GGATG | 4 cut(s) | 508, 790, 841, 1135 |
| BtsI | GCAGTG | 1 cut(s) | 463 |
| BtsIMutI | CAGTG | 4 cut(s) | 463, 1657, 1843, 2094 |
| Cac8I | GCNNGC | 3 cut(s) | 774, 963, 2092 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1439, 1811 |
| Cfr13I | GGNCC | 4 cut(s) | 143, 325, 431, 1504 |
| ClaI | ATCGAT | 1 cut(s) | 413 |
| Csp6I | GTAC | 9 cut(s) | 1365, 1398, 1431, 1551, 1584, 1776, 1914, 1929, 1962 |
| CviAII | CATG | 2 cut(s) | 1113, 1220 |
| CviQI | GTAC | 9 cut(s) | 1365, 1398, 1431, 1551, 1584, 1776, 1914, 1929, 1962 |
| DdeI | CTNAG | 6 cut(s) | 110, 166, 242, 890, 957, 1125 |
| DpnI | GATC | 5 cut(s) | 412, 416, 1269, 1590, 1782 |
| DpnII | GATC | 5 cut(s) | 410, 414, 1267, 1588, 1780 |
| Eam1104I | CTCTTC | 8 cut(s) | 154, 491, 548, 554, 560, 647, 668, 696 |
| EarI | CTCTTC | 8 cut(s) | 154, 491, 548, 554, 560, 647, 668, 696 |
| Eco130I | CCWWGG | 1 cut(s) | 966 |
| Eco32I | GATATC | 1 cut(s) | 1164 |
| Eco47I | GGWCC | 2 cut(s) | 325, 431 |
| Eco57I | CTGAAG | 5 cut(s) | 251, 897, 1371, 1692, 1878 |
| Eco81I | CCTNAGG | 1 cut(s) | 110 |
| EcoRII | CCWGG | 1 cut(s) | 744 |
| EcoRV | GATATC | 1 cut(s) | 1164 |
| EcoT14I | CCWWGG | 1 cut(s) | 966 |
| ErhI | CCWWGG | 1 cut(s) | 966 |
| FaeI | CATG | 2 cut(s) | 1116, 1223 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 950, 982, 1984, 2016 |
| FaqI | GGGAC | 2 cut(s) | 1345, 2154 |
| FatI | CATG | 2 cut(s) | 1112, 1219 |
| FauI | CCCGC | 2 cut(s) | 390, 899 |
| Fnu4HI | GCNGC | 5 cut(s) | 137, 862, 865, 951, 954 |
| FokI | GGATG | 4 cut(s) | 515, 797, 848, 1142 |
| Fsp4HI | GCNGC | 5 cut(s) | 137, 862, 865, 951, 954 |
| FspBI | CTAG | 5 cut(s) | 125, 254, 1265, 1568, 2076 |
| GluI | GCNGC | 5 cut(s) | 137, 862, 865, 951, 954 |
| HaeIII | GGCC | 3 cut(s) | 115, 144, 1506 |
| HapII | CCGG | 3 cut(s) | 323, 343, 2064 |
| Hin1I | GRCGYC | 1 cut(s) | 59 |
| Hin1II | CATG | 2 cut(s) | 1116, 1223 |
| HinfI | GANTC | 7 cut(s) | 170, 272, 365, 1092, 1333, 1403, 1610 |
| HpaII | CCGG | 3 cut(s) | 323, 343, 2064 |
| HphI | GGTGA | 8 cut(s) | 187, 454, 728, 1258, 1508, 1700, 1886, 2144 |
| Hpy166II | GTNNAC | 3 cut(s) | 81, 995, 1398 |
| Hpy188III | TCNNGA | 6 cut(s) | 323, 362, 434, 899, 974, 1297 |
| Hpy8I | GTNNAC | 3 cut(s) | 81, 995, 1398 |
| Hpy99I | CGWCG | 3 cut(s) | 61, 64, 304 |
| HpyCH4III | ACNGT | 3 cut(s) | 999, 1448, 1954 |
| HpyCH4IV | ACGT | 6 cut(s) | 59, 77, 1481, 1673, 1859, 2117 |
| HpyCH4V | TGCA | 7 cut(s) | 605, 1158, 1310, 1349, 1535, 1727, 2180 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 355, 962, 1733, 1808, 2127 |
| HpyF3I | CTNAG | 6 cut(s) | 110, 166, 242, 890, 957, 1125 |
| HpySE526I | ACGT | 6 cut(s) | 59, 77, 1481, 1673, 1859, 2117 |
| Hsp92I | GRCGYC | 1 cut(s) | 59 |
| Hsp92II | CATG | 2 cut(s) | 1116, 1223 |
| Kpn2I | TCCGGA | 1 cut(s) | 322 |
| Kzo9I | GATC | 5 cut(s) | 410, 414, 1267, 1588, 1780 |
| LmnI | GCTCC | 4 cut(s) | 980, 1622, 1808, 2066 |
| Lsp1109I | GCAGC | 3 cut(s) | 848, 962, 965 |
| MaeI | CTAG | 5 cut(s) | 125, 254, 1265, 1568, 2076 |
| MaeII | ACGT | 6 cut(s) | 59, 77, 1481, 1673, 1859, 2117 |
| MaeIII | GTNAC | 4 cut(s) | 848, 1211, 1829, 1954 |
| MalI | GATC | 5 cut(s) | 412, 416, 1269, 1590, 1782 |
| MboI | GATC | 5 cut(s) | 410, 414, 1267, 1588, 1780 |
| MhlI | GDGCHC | 1 cut(s) | 2096 |
| MluCI | AATT | 8 cut(s) | 466, 921, 1071, 1105, 1202, 1225, 1560, 1938 |
| MlyI | GAGTC | 3 cut(s) | 179, 359, 1327 |
| MmeI | TCCRAC | 5 cut(s) | 294, 815, 1081, 1616, 1808 |
| MroI | TCCGGA | 1 cut(s) | 322 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1145 |
| MspA1I | CMGCKG | 1 cut(s) | 906 |
| MspCI | CTTAAG | 1 cut(s) | 23 |
| MspI | CCGG | 3 cut(s) | 323, 343, 2064 |
| MspR9I | CCNGG | 2 cut(s) | 343, 746 |
| Mva1269I | GAATGC | 2 cut(s) | 813, 2132 |
| MvaI | CCWGG | 1 cut(s) | 746 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 355, 962, 1733, 1808, 2127 |
| NciI | CCSGG | 1 cut(s) | 343 |
| NdeII | GATC | 5 cut(s) | 410, 414, 1267, 1588, 1780 |
| NlaIII | CATG | 2 cut(s) | 1116, 1223 |
| NlaIV | GGNNCC | 3 cut(s) | 145, 327, 2062 |
| NmeAIII | GCCGAG | 1 cut(s) | 229 |
| NmuCI | GTSAC | 1 cut(s) | 1829 |
| NspV | TTCGAA | 2 cut(s) | 192, 844 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 68 |
| PctI | GAATGC | 2 cut(s) | 813, 2132 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1145 |
| PfeI | GAWTC | 4 cut(s) | 272, 1092, 1403, 1610 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1075, 1910 |
| PfoI | TCCNGGA | 1 cut(s) | 744 |
| PkrI | GCNGC | 5 cut(s) | 138, 863, 866, 952, 955 |
| PleI | GAGTC | 3 cut(s) | 178, 359, 1327 |
| PpsI | GAGTC | 3 cut(s) | 178, 359, 1327 |
| Psp6I | CCWGG | 1 cut(s) | 744 |
| PspGI | CCWGG | 1 cut(s) | 744 |
| PspN4I | GGNNCC | 3 cut(s) | 145, 327, 2062 |
| PspPI | GGNCC | 4 cut(s) | 143, 325, 431, 1504 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1439, 1811 |
| RsaI | GTAC | 9 cut(s) | 1366, 1399, 1432, 1552, 1585, 1777, 1915, 1930, 1963 |
| RsaNI | GTAC | 9 cut(s) | 1365, 1398, 1431, 1551, 1584, 1776, 1914, 1929, 1962 |
| SatI | GCNGC | 5 cut(s) | 137, 862, 865, 951, 954 |
| Sau3AI | GATC | 5 cut(s) | 410, 414, 1267, 1588, 1780 |
| Sau96I | GGNCC | 4 cut(s) | 143, 325, 431, 1504 |
| SchI | GAGTC | 3 cut(s) | 179, 359, 1327 |
| ScrFI | CCNGG | 2 cut(s) | 343, 746 |
| SduI | GDGCHC | 1 cut(s) | 2096 |
| SfcI | CTRYAG | 7 cut(s) | 276, 1380, 1605, 1731, 1803, 1950, 2055 |
| SfuI | TTCGAA | 2 cut(s) | 192, 844 |
| SinI | GGWCC | 2 cut(s) | 325, 431 |
| SmlI | CTYRAG | 1 cut(s) | 23 |
| SmoI | CTYRAG | 1 cut(s) | 23 |
| SpeI | ACTAGT | 1 cut(s) | 2075 |
| Sse9I | AATT | 8 cut(s) | 466, 921, 1071, 1105, 1202, 1225, 1560, 1938 |
| SsiI | CCGC | 7 cut(s) | 136, 369, 397, 864, 906, 1998, 2130 |
| SspI | AATATT | 1 cut(s) | 1545 |
| SspMI | CTAG | 5 cut(s) | 125, 254, 1265, 1568, 2076 |
| StyD4I | CCNGG | 2 cut(s) | 341, 744 |
| StyI | CCWWGG | 1 cut(s) | 966 |
| TaaI | ACNGT | 3 cut(s) | 999, 1448, 1954 |
| TaiI | ACGT | 6 cut(s) | 62, 80, 1484, 1676, 1862, 2120 |
| TaqI | TCGA | 8 cut(s) | 71, 192, 335, 413, 827, 844, 1030, 1207 |
| TaqII | GACCGA | 1 cut(s) | 845 |
| TasI | AATT | 8 cut(s) | 466, 921, 1071, 1105, 1202, 1225, 1560, 1938 |
| TatI | WGTACW | 1 cut(s) | 1397 |
| TauI | GCSGC | 2 cut(s) | 139, 867 |
| TfiI | GAWTC | 4 cut(s) | 272, 1092, 1403, 1610 |
| TscAI | CASTG | 4 cut(s) | 463, 1657, 1843, 2101 |
| TseFI | GTSAC | 1 cut(s) | 1829 |
| TseI | GCWGC | 3 cut(s) | 861, 950, 953 |
| Tsp45I | GTSAC | 1 cut(s) | 1829 |
| TspDTI | ATGAA | 1 cut(s) | 2139 |
| TspGWI | ACGGA | 1 cut(s) | 76 |
| TspRI | CASTG | 4 cut(s) | 463, 1657, 1843, 2101 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1075, 1910 |
| Vha464I | CTTAAG | 1 cut(s) | 23 |
| VpaK11BI | GGWCC | 2 cut(s) | 325, 431 |
| XapI | RAATTY | 3 cut(s) | 1105, 1202, 1225 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1145 |
| XspI | CTAG | 5 cut(s) | 125, 254, 1265, 1568, 2076 |
| ZraI | GACGTC | 1 cut(s) | 60 |