Rh1DG327000

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0012338
Physical Location & Seq
Forward (+)
55225214 .. 55228336
3123 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG327000.1

Sequence Viewer

Length: 2085 bp
ATGGTTTTATCAAACCGAAAGCTGAAGCAACAGCTCAGGGAGAAGATAGCCGATTCTTTATTGACATTCGAAATCGTTAAGTCCGACCCGAGCAATGACGGGTCTGCAAACCCTGACCCGAATTCGCAGCCCCAATCGCTGAGAGCGCTTCTGGGTTCCGCGACCCCGAAGCCCAGCTTGTCGAAGCGGGCGAAAAGGAGAAAGATCGCCGCTTTGCGAGGTCCGGCGGCGAGTGGCAGCGGCGGTAATTTTGAGGAAAACGAGGGGGAGGAAATTAGGGCAGAGGAATTGGGGGTTGAGAAGGAAAATAGTGGAGCTTTGGGTTCGGCGGGAAATGGGGATTTGAAGAAGGACATTGGGTCGGAGAGTTTGGGGAAGAAGAAGAAGAAGAAGAAGAAGGAAAAGAGTGGAGATTTGGGTGCAGAGGGAAATGGGGATTTGGAGGAAGAGAAAAGTGAAATTGGGTCAGAGAGTTTGGGGAAGAAGAAGAGGAAGAGAGATGAGGAAGAAAAGAGTGGAGATTTGAGTTCAGAGGAAAATGGGGGTGTGAAGGAGGCTAAGAAACCAAAGAAGAAGAAGCCCAAGTGGAAGAAGAAGAAGGAGGCAAAGAGTGAGGAAGAGAAGGGTTTTGAGGTTGTGAGGGAAGACAAGAAGGGATTTGAGGTTGTGAGGGAAGAGGAAGGTGTCAATGAGACTAATATGGAAACTGAAAGGCAAGCAAATGGGGAAGTTGCGACAAAAGTTTATGTTGGAGGGATTCCTTATTACTCGACGGAGGATGATATTCGAAGTTACTTTGAAAGCTGTGGCTCCATTACTGAGATTGATTGTATGAAGTTTCCTGACAGTGGGAAGTTCAAAGGAATTGCCATTATTAGCTTTAGGACAGAAGCTGCAGCTAAACGAGCCTTGGCTCTTGATGGAGCTGACATGGGTGGACTGTTTCTGAAAATCCAACCTTACAAAACAACTCGGGTCAATAAAGTAGTCAATAAAGTATCTGATTTTGCCCCAAAAATTGTGGAGGGCTACAATAGAATCTACGTTGGAAACTTGTCTTGGGATATCACTGAGGACGAACTGAGGAAACTTTTCTCAGATTGCAAGATATCGTCTATCAATTTTGGCATGGATAAGGAAACAGGAGAATTCCGAGGCTATGCCCATGTGGAATTTTCCGACAGTCTCTCACTGACAATGGCATTGAAGTTGGATCAGAAGATTGTTCTGGGGAGACCTGTCAAGATAAGCTGTGCAGTTCCTCTGAGAAAACCAGGGATCCATCCCAAGTCTGTATCCACAACTACGGGTACCCTTTCGGAGGCTGTAGCTATTACTGCAAGTGCAGGAGCTGATAATGCCGGGTTGAGTGCCATCAGTGGTAAGCTTAAGAGAAGGACCTGCTATGAGTGTGGTGAAAAGGGCCATGTTTCTTCACTTTGTCCAATGAAGCAACCTGTGAATGTAATAGATACTAATGCATCCTATACAAAGCCTGGAACGAGTACAAGTATGCTTTTGGAGTCTGTAACAACAAGTACAGAAGCTGCTAATACTGAGTTGAGTTCTGTCAGTGGTAAGATCAAGAGAAGGACATGCTATGAGTGTGGTGAAAAGGGCCATGTTTCTACAGCTTGTCCAAAGAAGCAATCTGCTGGTGCAATAATAGATACCAATGCCACCCCTATGACGCCTGTACATACAATTACAAGTCCTGTATGGGAGTCCGTAGCTATAACTCCAAGTACAGGAGTTGATGATACTGGGTTGAGTTCCATCAGCGGTAAGATTAAGAGAAGAACATGTTATGAATGTGGGGAAAAAGGTCATGTTTCTACAGCTTGTCCAAACAAACAATATGCTCAGCCAATAGAAACCACTGCAAGTCATATGAAGCCTGTACCTACAACTCCAACACCCCTTCTGGAGTCTGCAGCTACAACTACAAGTACAGAACCCGATAATGCTGGGTTGAGCTCCATTAGCGGTAAGATTAAGAGAAGGACGTGCTATGAGTGTGGTGAAAAGGGCCATATATCTTCAGCTTGTCCAAAGAAACAATCTGTCGATAACAATGCAAGCTGA

Protein Analysis

694

Amino Acids

74.76

Weight (kDa)

8.86

Isoelectric Point (pI)

42.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 248 - 315 4.6e-13 RNA recognition motif
RRM_1 PF00076 347 - 414 1.5e-12 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012338)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G55340
fragaria_vesca FvH4_7g21531
malus_domestica MD01G1122100.v1.1 MD07G1191600.v1.1
prunus_persica Prupe.2G229600_v2.0.a1 Prupe.2G229700_v2.0.a1
pyrus_communis pycom01g14890 pycom07g18100
rosa_chinensis RchiOBHm_Chr1g0365851
rosa_laevigata RLG00000027386
rosa_multiflora Rmu_sc0023137.1_g000001 Rmu_sc0041703.1_g000001
rosa_roxburghii Rroxscaffold_4G00290800
rosa_rugosa Rorug01G0325000
rosa_samantha Rh1AG334000 Rh1BG294600 Rh1CG311300 Rh1DG327000
rosa_wichuraiana Rw1G029630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1409
Acc65I GGTACC 1 cut(s) 1310
AccB1I GGYRCC 1 cut(s) 1310
AccII CGCG 1 cut(s) 161
AciI CCGC 9 cut(s) 159, 187, 210, 227, 240, 243, 329, 1782, 1986
AclWI GGATC 3 cut(s) 1221, 1273, 1286
AcsI RAATTY 3 cut(s) 121, 1148, 1172
AcuI CTGAAG 2 cut(s) 44, 2025
AcyI GRCGYC 1 cut(s) 1691
AfaI GTAC 7 cut(s) 1312, 1507, 1540, 1698, 1747, 1902, 1951
AfeI AGCGCT 1 cut(s) 147
AfiI CCNNNNNNNGG 3 cut(s) 848, 1321, 1748
AflII CTTAAG 1 cut(s) 1388
AflIII ACRYGT 1 cut(s) 1802
AgsI TTSAA 4 cut(s) 346, 800, 859, 1207
AhdI GACNNNNNGTC 1 cut(s) 358
AjiI CACGTC 1 cut(s) 2007
AjnI CCWGG 2 cut(s) 1273, 1495
AjuI GAANNNNNNNTTGG 2 cut(s) 1042, 1074
Alw21I GWGCWC 1 cut(s) 1979
Alw26I GTCTC 3 cut(s) 686, 1190, 1228
AlwI GGATC 3 cut(s) 1221, 1273, 1286
AlwNI CAGNNNCTG 3 cut(s) 893, 1352, 1547
Ama87I CYCGRG 2 cut(s) 88, 972
Aor51HI AGCGCT 1 cut(s) 147
AoxI GGCC 3 cut(s) 1423, 1618, 2029
ApeKI GCWGC 6 cut(s) 127, 237, 893, 896, 1547, 1934
ApoI RAATTY 3 cut(s) 121, 1148, 1172
Asp700I GAANNNNTTC 1 cut(s) 1091
Asp718I GGTACC 1 cut(s) 1310
AspLEI GCGC 1 cut(s) 148
AspS9I GGNCC 5 cut(s) 221, 1398, 1423, 1618, 2029
AsuC2I CCSGG 1 cut(s) 1363
AsuHPI GGTGA 3 cut(s) 1427, 1622, 2033
AsuII TTCGAA 2 cut(s) 69, 787
AvaI CYCGRG 2 cut(s) 88, 972
AvaII GGWCC 2 cut(s) 221, 1398
BamHI GGATCC 1 cut(s) 1278
BanI GGYRCC 1 cut(s) 1310
BanII GRGCYC 1 cut(s) 1979
BbsI GAAGAC 1 cut(s) 651
Bbv12I GWGCWC 1 cut(s) 1979
BbvI GCAGC 6 cut(s) 139, 249, 880, 908, 1534, 1946
BccI CCATC 4 cut(s) 914, 1290, 1382, 1784
BcgI CGANNNNNNTGC 1 cut(s) 2057
BciT130I CCWGG 2 cut(s) 1275, 1497
BciVI GTATCC 1 cut(s) 1306
BcnI CCSGG 1 cut(s) 1363
BcoDI GTCTC 3 cut(s) 686, 1190, 1228
BfmI CTRYAG 5 cut(s) 894, 1326, 1629, 1836, 1932
BfoI RGCGCY 1 cut(s) 149
BfrI CTTAAG 1 cut(s) 1388
BfuAI ACCTGC 1 cut(s) 1409
BfuI GTATCC 1 cut(s) 1306
BisI GCNGC 9 cut(s) 128, 210, 228, 238, 241, 894, 897, 1548, 1935
BlpI GCTNAGC 1 cut(s) 1863
BlsI GCNGC 9 cut(s) 129, 211, 229, 239, 242, 895, 898, 1549, 1936
Bme1390I CCNGG 3 cut(s) 1275, 1363, 1497
Bme18I GGWCC 2 cut(s) 221, 1398
BmeRI GACNNNNNGTC 1 cut(s) 358
BmeT110I CYCGRG 2 cut(s) 88, 972
BmgBI CACGTC 1 cut(s) 2007
BmgT120I GGNCC 5 cut(s) 221, 1398, 1423, 1618, 2029
BmiI GGNNCC 4 cut(s) 157, 811, 1280, 1312
BmrFI CCNGG 3 cut(s) 1275, 1363, 1497
BmrI ACTGGG 1 cut(s) 1773
BmsI GCATC 1 cut(s) 1490
BmuI ACTGGG 1 cut(s) 1773
BpiI GAAGAC 1 cut(s) 651
BpmI CTGGAG 1 cut(s) 1946
Bpu10I CCTNAGC 1 cut(s) 35
Bpu1102I GCTNAGC 1 cut(s) 1863
Bpu14I TTCGAA 2 cut(s) 69, 787
BpuMI CCSGG 1 cut(s) 1363
BsaHI GRCGYC 1 cut(s) 1691
BsaI GGTCTC 1 cut(s) 1228
BsaJI CCNNGG 3 cut(s) 909, 1153, 1274
Bsc4I CCNNNNNNNGG 3 cut(s) 848, 1321, 1748
Bse1I ACTGG 1 cut(s) 1768
Bse3DI GCAATG 1 cut(s) 100
BseBI CCWGG 2 cut(s) 1275, 1497
BseDI CCNNGG 3 cut(s) 909, 1153, 1274
BseGI GGATG 3 cut(s) 784, 1282, 1481
BseLI CCNNNNNNNGG 3 cut(s) 848, 1321, 1748
BseMI GCAATG 1 cut(s) 100
BseMII CTCAG 9 cut(s) 49, 131, 810, 1062, 1073, 1110, 1256, 1548, 1877
BseNI ACTGG 1 cut(s) 1768
BseXI GCAGC 6 cut(s) 139, 249, 880, 908, 1534, 1946
BseYI CCCAGC 2 cut(s) 173, 1967
BsgI GTGCAG 3 cut(s) 441, 1275, 1365
Bsh1236I CGCG 1 cut(s) 161
BshFI GGCC 3 cut(s) 1425, 1620, 2031
BshNI GGYRCC 1 cut(s) 1310
BsiHKAI GWGCWC 1 cut(s) 1979
BsiHKCI CYCGRG 2 cut(s) 88, 972
BsiSI CCGG 2 cut(s) 224, 1362
BslI CCNNNNNNNGG 3 cut(s) 848, 1321, 1748
BsmAI GTCTC 3 cut(s) 686, 1190, 1228
BsnI GGCC 3 cut(s) 1425, 1620, 2031
Bso31I GGTCTC 1 cut(s) 1228
BsoBI CYCGRG 2 cut(s) 88, 972
Bsp119I TTCGAA 2 cut(s) 69, 787
Bsp1286I GDGCHC 1 cut(s) 1979
Bsp1407I TGTACA 1 cut(s) 1696
Bsp143I GATC 4 cut(s) 204, 1213, 1278, 1581
Bsp1720I GCTNAGC 1 cut(s) 1863
BspACI CCGC 9 cut(s) 159, 187, 210, 227, 240, 243, 329, 1782, 1986
BspANI GGCC 3 cut(s) 1425, 1620, 2031
BspCNI CTCAG 9 cut(s) 48, 132, 811, 1063, 1074, 1109, 1257, 1549, 1876
BspFNI CGCG 1 cut(s) 161
BspLI GGNNCC 4 cut(s) 157, 811, 1280, 1312
BspMAI CTGCAG 2 cut(s) 898, 1936
BspMI ACCTGC 1 cut(s) 1409
BspPI GGATC 3 cut(s) 1221, 1273, 1286
BspT104I TTCGAA 2 cut(s) 69, 787
BspT107I GGYRCC 1 cut(s) 1310
BspTI CTTAAG 1 cut(s) 1388
BspTNI GGTCTC 1 cut(s) 1228
BsrDI GCAATG 1 cut(s) 100
BsrGI TGTACA 1 cut(s) 1696
BsrI ACTGG 1 cut(s) 1768
BssECI CCNNGG 3 cut(s) 909, 1153, 1274
BssMI GATC 4 cut(s) 204, 1213, 1278, 1581
BssNI GRCGYC 1 cut(s) 1691
BssT1I CCWWGG 1 cut(s) 909
Bst2UI CCWGG 2 cut(s) 1275, 1497
Bst4CI ACNGT 3 cut(s) 848, 942, 1184
Bst6I CTCTTC 5 cut(s) 441, 482, 488, 612, 669
BstACI GRCGYC 1 cut(s) 1691
BstAFI CTTAAG 1 cut(s) 1388
BstAUI TGTACA 1 cut(s) 1696
BstBI TTCGAA 2 cut(s) 69, 787
BstC8I GCNNGC 3 cut(s) 189, 717, 2080
BstENI CCTNNNNNAGG 1 cut(s) 1319
BstF5I GGATG 3 cut(s) 784, 1282, 1481
BstFNI CGCG 1 cut(s) 161
BstH2I RGCGCY 1 cut(s) 149
BstHHI GCGC 1 cut(s) 148
BstKTI GATC 4 cut(s) 207, 1216, 1281, 1584
BstMAI GTCTC 3 cut(s) 686, 1190, 1228
BstMBI GATC 4 cut(s) 204, 1213, 1278, 1581
BstMWI GCNNNNNNNGC 6 cut(s) 136, 145, 905, 1337, 1358, 1983
BstNI CCWGG 2 cut(s) 1275, 1497
BstNSI RCATGY 2 cut(s) 1599, 1806
BstSCI CCNGG 3 cut(s) 1273, 1361, 1495
BstSFI CTRYAG 5 cut(s) 894, 1326, 1629, 1836, 1932
BstUI CGCG 1 cut(s) 161
BstV1I GCAGC 6 cut(s) 139, 249, 880, 908, 1534, 1946
BstV2I GAAGAC 1 cut(s) 651
BstX2I RGATCY 1 cut(s) 1278
BstYI RGATCY 1 cut(s) 1278
BsuI GTATCC 1 cut(s) 1306
BsuRI GGCC 3 cut(s) 1425, 1620, 2031
BtrI CACGTC 1 cut(s) 2007
BtsCI GGATG 3 cut(s) 784, 1282, 1481
BtsI GCAGTG 1 cut(s) 1878
BtsIMutI CAGTG 6 cut(s) 853, 1068, 1190, 1384, 1579, 1878
BveI ACCTGC 1 cut(s) 1409
Cac8I GCNNGC 3 cut(s) 189, 717, 2080
CaiI CAGNNNCTG 3 cut(s) 893, 1352, 1547
CfoI GCGC 1 cut(s) 148
Cfr13I GGNCC 5 cut(s) 221, 1398, 1423, 1618, 2029
CseI GACGC 1 cut(s) 1699
Csp6I GTAC 7 cut(s) 1311, 1506, 1539, 1697, 1746, 1901, 1950
CspCI CAANNNNNGTGG 2 cut(s) 1002, 1037
CviAII CATG 8 cut(s) 931, 1129, 1166, 1427, 1596, 1622, 1803, 1829
CviQI GTAC 7 cut(s) 1311, 1506, 1539, 1697, 1746, 1901, 1950
DpnI GATC 4 cut(s) 206, 1215, 1280, 1583
DpnII GATC 4 cut(s) 204, 1213, 1278, 1581
DriI GACNNNNNGTC 1 cut(s) 358
Eam1104I CTCTTC 5 cut(s) 441, 482, 488, 612, 669
Eam1105I GACNNNNNGTC 1 cut(s) 358
EarI CTCTTC 5 cut(s) 441, 482, 488, 612, 669
Ecl136II GAGCTC 1 cut(s) 1977
Eco130I CCWWGG 1 cut(s) 909
Eco24I GRGCYC 1 cut(s) 1979
Eco31I GGTCTC 1 cut(s) 1228
Eco32I GATATC 2 cut(s) 1066, 1110
Eco47I GGWCC 2 cut(s) 221, 1398
Eco47III AGCGCT 1 cut(s) 147
Eco53kI GAGCTC 1 cut(s) 1977
Eco57I CTGAAG 2 cut(s) 44, 2025
Eco88I CYCGRG 2 cut(s) 88, 972
EcoICRI GAGCTC 1 cut(s) 1977
EcoNI CCTNNNNNAGG 1 cut(s) 1319
EcoO109I RGGNCCY 1 cut(s) 1398
EcoRI GAATTC 2 cut(s) 121, 1148
EcoRII CCWGG 2 cut(s) 1273, 1495
EcoRV GATATC 2 cut(s) 1066, 1110
EcoT14I CCWWGG 1 cut(s) 909
EcoT22I ATGCAT 1 cut(s) 1483
EcoT38I GRGCYC 1 cut(s) 1979
ErhI CCWWGG 1 cut(s) 909
FaeI CATG 8 cut(s) 934, 1132, 1169, 1430, 1599, 1625, 1806, 1832
FalI AAGNNNNNCTT 2 cut(s) 161, 193
FatI CATG 8 cut(s) 930, 1128, 1165, 1426, 1595, 1621, 1802, 1828
FauI CCCGC 2 cut(s) 180, 322
FauNDI CATATG 1 cut(s) 1890
Fnu4HI GCNGC 9 cut(s) 128, 210, 228, 238, 241, 894, 897, 1548, 1935
FokI GGATG 3 cut(s) 791, 1269, 1468
FriOI GRGCYC 1 cut(s) 1979
Fsp4HI GCNGC 9 cut(s) 128, 210, 228, 238, 241, 894, 897, 1548, 1935
GlaI GCGC 1 cut(s) 147
GluI GCNGC 9 cut(s) 128, 210, 228, 238, 241, 894, 897, 1548, 1935
GsaI CCCAGC 2 cut(s) 177, 1971
GsuI CTGGAG 1 cut(s) 1946
HaeII RGCGCY 1 cut(s) 149
HaeIII GGCC 3 cut(s) 1425, 1620, 2031
HapII CCGG 2 cut(s) 224, 1362
HgaI GACGC 1 cut(s) 1699
HhaI GCGC 1 cut(s) 148
Hin1I GRCGYC 1 cut(s) 1691
Hin1II CATG 8 cut(s) 934, 1132, 1169, 1430, 1599, 1625, 1806, 1832
Hin6I GCGC 1 cut(s) 146
HinP1I GCGC 1 cut(s) 146
HindIII AAGCTT 1 cut(s) 1385
HinfI GANTC 6 cut(s) 53, 757, 1038, 1523, 1724, 1928
HpaII CCGG 2 cut(s) 224, 1362
HphI GGTGA 3 cut(s) 1427, 1622, 2033
Hpy166II GTNNAC 1 cut(s) 938
Hpy188III TCNNGA 5 cut(s) 842, 917, 1243, 1585, 1925
Hpy8I GTNNAC 1 cut(s) 938
Hpy99I CGWCG 1 cut(s) 775
HpyCH4III ACNGT 3 cut(s) 848, 942, 1184
HpyCH4IV ACGT 2 cut(s) 1044, 2006
HpyF10VI GCNNNNNNNGC 6 cut(s) 136, 145, 905, 1337, 1358, 1983
HpySE526I ACGT 2 cut(s) 1044, 2006
Hsp92I GRCGYC 1 cut(s) 1691
Hsp92II CATG 8 cut(s) 934, 1132, 1169, 1430, 1599, 1625, 1806, 1832
HspAI GCGC 1 cut(s) 146
KpnI GGTACC 1 cut(s) 1314
Kzo9I GATC 4 cut(s) 204, 1213, 1278, 1581
LmnI GCTCC 5 cut(s) 314, 815, 923, 1349, 1982
Lsp1109I GCAGC 6 cut(s) 139, 249, 880, 908, 1534, 1946
LweI GCATC 1 cut(s) 1490
MaeII ACGT 2 cut(s) 1044, 2006
MaeIII GTNAC 2 cut(s) 791, 1528
MalI GATC 4 cut(s) 206, 1215, 1280, 1583
MboI GATC 4 cut(s) 204, 1213, 1278, 1581
MflI RGATCY 1 cut(s) 1278
MhlI GDGCHC 1 cut(s) 1979
MlyI GAGTC 3 cut(s) 1532, 1733, 1937
MmeI TCCRAC 8 cut(s) 108, 342, 730, 979, 1027, 1191, 1203, 1937
Mph1103I ATGCAT 1 cut(s) 1483
MroXI GAANNNNTTC 1 cut(s) 1091
MseI TTAA 4 cut(s) 78, 1389, 1791, 1995
MslI CAYNNNNRTG 1 cut(s) 1685
MspA1I CMGCKG 2 cut(s) 240, 1782
MspCI CTTAAG 1 cut(s) 1388
MspI CCGG 2 cut(s) 224, 1362
MspR9I CCNGG 3 cut(s) 1275, 1363, 1497
MvaI CCWGG 2 cut(s) 1275, 1497
MvnI CGCG 1 cut(s) 161
MwoI GCNNNNNNNGC 6 cut(s) 136, 145, 905, 1337, 1358, 1983
NciI CCSGG 1 cut(s) 1363
NdeI CATATG 1 cut(s) 1890
NdeII GATC 4 cut(s) 204, 1213, 1278, 1581
NlaIII CATG 8 cut(s) 934, 1132, 1169, 1430, 1599, 1625, 1806, 1832
NlaIV GGNNCC 4 cut(s) 157, 811, 1280, 1312
NsiI ATGCAT 1 cut(s) 1483
NspI RCATGY 2 cut(s) 1599, 1806
NspV TTCGAA 2 cut(s) 69, 787
PciI ACATGT 1 cut(s) 1802
PcsI WCGNNNNNNNCGW 2 cut(s) 81, 188
PdmI GAANNNNTTC 1 cut(s) 1091
PfeI GAWTC 3 cut(s) 53, 757, 1038
PkrI GCNGC 9 cut(s) 129, 211, 229, 239, 242, 895, 898, 1549, 1936
PleI GAGTC 3 cut(s) 1531, 1732, 1936
PpsI GAGTC 3 cut(s) 1531, 1732, 1936
PpuMI RGGWCCY 1 cut(s) 1398
PscI ACATGT 1 cut(s) 1802
Psp124BI GAGCTC 1 cut(s) 1979
Psp5II RGGWCCY 1 cut(s) 1398
Psp6I CCWGG 2 cut(s) 1273, 1495
PspFI CCCAGC 2 cut(s) 173, 1967
PspGI CCWGG 2 cut(s) 1273, 1495
PspN4I GGNNCC 4 cut(s) 157, 811, 1280, 1312
PspPI GGNCC 5 cut(s) 221, 1398, 1423, 1618, 2029
PspPPI RGGWCCY 1 cut(s) 1398
PstI CTGCAG 2 cut(s) 898, 1936
PstNI CAGNNNCTG 3 cut(s) 893, 1352, 1547
PsuI RGATCY 1 cut(s) 1278
RsaI GTAC 7 cut(s) 1312, 1507, 1540, 1698, 1747, 1902, 1951
RsaNI GTAC 7 cut(s) 1311, 1506, 1539, 1697, 1746, 1901, 1950
RseI CAYNNNNRTG 1 cut(s) 1685
SacI GAGCTC 1 cut(s) 1979
SaqAI TTAA 4 cut(s) 78, 1389, 1791, 1995
SatI GCNGC 9 cut(s) 128, 210, 228, 238, 241, 894, 897, 1548, 1935
Sau3AI GATC 4 cut(s) 204, 1213, 1278, 1581
Sau96I GGNCC 5 cut(s) 221, 1398, 1423, 1618, 2029
SchI GAGTC 3 cut(s) 1532, 1733, 1937
ScrFI CCNGG 3 cut(s) 1275, 1363, 1497
SduI GDGCHC 1 cut(s) 1979
SfaNI GCATC 1 cut(s) 1490
SfcI CTRYAG 5 cut(s) 894, 1326, 1629, 1836, 1932
SfuI TTCGAA 2 cut(s) 69, 787
SinI GGWCC 2 cut(s) 221, 1398
SmiMI CAYNNNNRTG 1 cut(s) 1685
SmlI CTYRAG 1 cut(s) 1388
SmoI CTYRAG 1 cut(s) 1388
SsiI CCGC 9 cut(s) 159, 187, 210, 227, 240, 243, 329, 1782, 1986
SstI GAGCTC 1 cut(s) 1979
StyD4I CCNGG 3 cut(s) 1273, 1361, 1495
StyI CCWWGG 1 cut(s) 909
TaaI ACNGT 3 cut(s) 848, 942, 1184
TaiI ACGT 2 cut(s) 1047, 2009
TaqI TCGA 5 cut(s) 69, 182, 770, 787, 2067
TatI WGTACW 5 cut(s) 1505, 1538, 1696, 1745, 1949
TauI GCSGC 3 cut(s) 212, 230, 243
TfiI GAWTC 3 cut(s) 53, 757, 1038
Tru1I TTAA 4 cut(s) 78, 1389, 1791, 1995
Tru9I TTAA 4 cut(s) 78, 1389, 1791, 1995
TscAI CASTG 6 cut(s) 853, 1075, 1197, 1384, 1579, 1885
TseI GCWGC 6 cut(s) 127, 237, 893, 896, 1547, 1934
TspDTI ATGAA 4 cut(s) 848, 1463, 1824, 1907
TspGWI ACGGA 2 cut(s) 788, 1717
TspRI CASTG 6 cut(s) 853, 1075, 1197, 1384, 1579, 1885
Vha464I CTTAAG 1 cut(s) 1388
VpaK11BI GGWCC 2 cut(s) 221, 1398
XagI CCTNNNNNAGG 1 cut(s) 1319
XapI RAATTY 3 cut(s) 121, 1148, 1172
XceI RCATGY 2 cut(s) 1599, 1806
XmnI GAANNNNTTC 1 cut(s) 1091
Zsp2I ATGCAT 1 cut(s) 1483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.