Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0001556

Physical Location & Seq

Genomic Coordinates Reverse (-)

26135523 .. 26137574

Gene Structure 2052 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G242300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGTGCCTGACCCGTGTCCAAAGCCTCCGCGAGAGGTTGGACGTGACTCTCTCTGCTCACCGCAATGAGATTGTTGCCCTGCTTTCAAGGTTTGTAAACAAGAGAAAAGGGTTTATGCAGCCCCATGAGCTTGTTGCTGAGTTTGAAGCAATCCTGAAGCTAACGGACAGAGGATCTTGGATGGGGCTTTTGGAAGTTATTGTTCTACCCCCATGGGTGGCTCTTGCTGTGCGCCCAAGGCCTGGTGTTTGGGAGTACATCCGTGTGAATGATGACGATGAATGTTTATTATGCATTTTTCTTGATTTGGAAACCAAAACTGCATTGCAGTTTTCATTTAATTACAATTGGATTTTTGCTATTTTCTTGGACTTCAACCTCACAAATCCAAAGAGTAGAGGCTACCCAGATGAGGAATTGTTTTTATTTTTATATGCAGATTTGGCTGAGAATAAGGAAAAAGAGAGGAATGGGTGGCTTGAGTATTATTTCCAGCAGCTTCACATTGACTCTATCAAATGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0001666 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008194 GO:0009266 GO:0009409 GO:0009413 GO:0009414 GO:0009415 GO:0009506 GO:0009628 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009791 GO:0009987 GO:0010033 GO:0010035 GO:0010037 GO:0010038 GO:0010154 GO:0010431 GO:0010555 GO:0016020 GO:0016043 GO:0016157 GO:0016740 GO:0016757 GO:0016758 GO:0021700 GO:0022414 GO:0022607 GO:0030054 GO:0032501 GO:0032502 GO:0032504 GO:0034059 GO:0034284 GO:0034285 GO:0035251 GO:0036293 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0046686 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051259 GO:0051262 GO:0055044 GO:0061458 GO:0065003 GO:0070482 GO:0071695 GO:0071840 GO:0071944 GO:0072347 GO:0072708 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glycos_transf_1 Sucrose_synth

Protein Analysis

175

Amino Acids

20.57

Weight (kDa)

5.28

Isoelectric Point (pI)

36.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001556)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43190 AT3G43190 AT5G20830 AT5G20830 AT5G20830
fragaria_vesca	FvH4_1g07260 FvH4_1g09360 FvH4_1g09360 FvH4_1g09360 FvH4_1g09360 FvH4_1g09360 FvH4_1g09360 FvH4_1g09360 FvH4_1g09360
malus_domestica	MD02G1100500.v1.1 MD02G1100600.v1.1 MD15G1223500.v1.1
prunus_persica	Prupe.2G242300_v2.0.a1 Prupe.7G192300_v2.0.a1 Prupe.7G192300_v2.0.a1 Prupe.7G192300_v2.0.a1 Prupe.7G192300_v2.0.a1 Prupe.7G192300_v2.0.a1 Prupe.7G192300_v2.0.a1
pyrus_communis	pycom02g07890 pycom15g19770
rosa_chinensis	RchiOBHm_Chr2g0093161 RchiOBHm_Chr2g0095901
rosa_laevigata	RLG00000016373 RLG00000016605
rosa_multiflora	Rmu_sc0003724.1_g000005 Rmu_sc0014241.1_g000002 Rmu_sc0038852.1_g000001
rosa_roxburghii	Rroxscaffold_2G00145980 Rroxscaffold_2G00148460
rosa_rugosa	Rorug02G0033300 Rorug02G0053600 Rorug02G0053600 Rorug02G0053700 Rorug02G0053800
rosa_samantha	Rh2AG079000 Rh2AG102900 Rh2BG080300 Rh2BG104300 Rh2CG082500 Rh2CG106800 Rh2DG078000 Rh2DG104500
rosa_wichuraiana	Rw2G006750 Rw2G007820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	242
AccII	CGCG	1 cut(s)	30
AciI	CCGC	2 cut(s)	28, 61
AclWI	GGATC	1 cut(s)	181
AcuI	CTGAAG	1 cut(s)	176
AfaI	GTAC	1 cut(s)	257
AfiI	CCNNNNNNNGG	3 cut(s)	217, 242, 412
AgsI	TTSAA	3 cut(s)	87, 146, 376
AjiI	CACGTC	1 cut(s)	43
AjnI	CCWGG	1 cut(s)	241
AluBI	AGCT	3 cut(s)	130, 160, 499
AluI	AGCT	3 cut(s)	130, 160, 499
AlwI	GGATC	1 cut(s)	181
AoxI	GGCC	1 cut(s)	239
ApeKI	GCWGC	2 cut(s)	118, 496
AspLEI	GCGC	1 cut(s)	234
AsuHPI	GGTGA	1 cut(s)	50
BbvI	GCAGC	2 cut(s)	130, 508
BccI	CCATC	1 cut(s)	175
BciT130I	CCWGG	1 cut(s)	243
BfaI	CTAG	1 cut(s)	523
BisI	GCNGC	2 cut(s)	119, 497
BlsI	GCNGC	2 cut(s)	120, 498
Bme1390I	CCNGG	1 cut(s)	243
BmgBI	CACGTC	1 cut(s)	43
BmrFI	CCNGG	1 cut(s)	243
BoxI	GACNNNNGTC	1 cut(s)	14
BpuEI	CTTGAG	1 cut(s)	500
BsaJI	CCNNGG	2 cut(s)	212, 236
Bsc4I	CCNNNNNNNGG	3 cut(s)	217, 242, 412
Bse3DI	GCAATG	2 cut(s)	70, 323
BseBI	CCWGG	1 cut(s)	243
BseDI	CCNNGG	2 cut(s)	212, 236
BseGI	GGATG	2 cut(s)	186, 258
BseLI	CCNNNNNNNGG	3 cut(s)	217, 242, 412
BseMI	GCAATG	2 cut(s)	70, 323
BseMII	CTCAG	2 cut(s)	129, 438
BseXI	GCAGC	2 cut(s)	130, 508
Bsh1236I	CGCG	1 cut(s)	30
BshFI	GGCC	1 cut(s)	241
BslI	CCNNNNNNNGG	3 cut(s)	217, 242, 412
BsnI	GGCC	1 cut(s)	241
Bsp143I	GATC	1 cut(s)	173
Bsp19I	CCATGG	1 cut(s)	212
BspACI	CCGC	2 cut(s)	28, 61
BspANI	GGCC	1 cut(s)	241
BspCNI	CTCAG	2 cut(s)	130, 439
BspFNI	CGCG	1 cut(s)	30
BspPI	GGATC	1 cut(s)	181
BsrDI	GCAATG	2 cut(s)	70, 323
BssECI	CCNNGG	2 cut(s)	212, 236
BssMI	GATC	1 cut(s)	173
BssT1I	CCWWGG	2 cut(s)	212, 236
Bst2UI	CCWGG	1 cut(s)	243
BstDEI	CTNAG	2 cut(s)	138, 447
BstDSI	CCRYGG	1 cut(s)	212
BstF5I	GGATG	2 cut(s)	186, 258
BstFNI	CGCG	1 cut(s)	30
BstHHI	GCGC	1 cut(s)	234
BstKTI	GATC	1 cut(s)	176
BstMBI	GATC	1 cut(s)	173
BstMWI	GCNNNNNNNGC	3 cut(s)	127, 238, 443
BstNI	CCWGG	1 cut(s)	243
BstPAI	GACNNNNGTC	1 cut(s)	14
BstSCI	CCNGG	1 cut(s)	241
BstUI	CGCG	1 cut(s)	30
BstV1I	GCAGC	2 cut(s)	130, 508
BstX2I	RGATCY	1 cut(s)	173
BstYI	RGATCY	1 cut(s)	173
BsuRI	GGCC	1 cut(s)	241
BtgI	CCRYGG	1 cut(s)	212
BtrI	CACGTC	1 cut(s)	43
BtsCI	GGATG	2 cut(s)	186, 258
CfoI	GCGC	1 cut(s)	234
Csp6I	GTAC	1 cut(s)	256
CviAII	CATG	2 cut(s)	125, 213
CviQI	GTAC	1 cut(s)	256
DdeI	CTNAG	2 cut(s)	138, 447
DpnI	GATC	1 cut(s)	175
DpnII	GATC	1 cut(s)	173
Eco130I	CCWWGG	2 cut(s)	212, 236
Eco147I	AGGCCT	1 cut(s)	241
Eco57I	CTGAAG	1 cut(s)	176
EcoRII	CCWGG	1 cut(s)	241
EcoT14I	CCWWGG	2 cut(s)	212, 236
EcoT22I	ATGCAT	1 cut(s)	296
ErhI	CCWWGG	2 cut(s)	212, 236
FaeI	CATG	2 cut(s)	128, 216
FaiI	YATR	6 cut(s)	116, 126, 214, 292, 433, 435
FatI	CATG	2 cut(s)	124, 212
Fnu4HI	GCNGC	2 cut(s)	119, 497
FokI	GGATG	2 cut(s)	193, 245
Fsp4HI	GCNGC	2 cut(s)	119, 497
FspBI	CTAG	1 cut(s)	523
GlaI	GCGC	1 cut(s)	233
GluI	GCNGC	2 cut(s)	119, 497
HaeIII	GGCC	1 cut(s)	241
HhaI	GCGC	1 cut(s)	234
Hin1II	CATG	2 cut(s)	128, 216
Hin6I	GCGC	1 cut(s)	232
HinP1I	GCGC	1 cut(s)	232
HinfI	GANTC	2 cut(s)	46, 509
HphI	GGTGA	1 cut(s)	50
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188III	TCNNGA	2 cut(s)	154, 302
Hpy8I	GTNNAC	1 cut(s)	97
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	5 cut(s)	118, 294, 323, 328, 437
HpyF10VI	GCNNNNNNNGC	3 cut(s)	127, 238, 443
HpyF3I	CTNAG	2 cut(s)	138, 447
HpySE526I	ACGT	1 cut(s)	42
Hsp92II	CATG	2 cut(s)	128, 216
HspAI	GCGC	1 cut(s)	232
Kzo9I	GATC	1 cut(s)	173
LpnPI	CCDG	7 cut(s)	20, 92, 167, 228, 255, 420, 506
Lsp1109I	GCAGC	2 cut(s)	130, 508
MaeI	CTAG	1 cut(s)	523
MaeII	ACGT	1 cut(s)	42
MaeIII	GTNAC	1 cut(s)	43
MalI	GATC	1 cut(s)	175
MboI	GATC	1 cut(s)	173
MfeI	CAATTG	1 cut(s)	346
MflI	RGATCY	1 cut(s)	173
MluCI	AATT	3 cut(s)	340, 346, 416
MlyI	GAGTC	2 cut(s)	40, 503
MmeI	TCCRAC	1 cut(s)	18
MnlI	CCTC	7 cut(s)	27, 35, 164, 389, 392, 406, 459
Mph1103I	ATGCAT	1 cut(s)	296
MseI	TTAA	1 cut(s)	339
MslI	CAYNNNNRTG	2 cut(s)	63, 263
MspR9I	CCNGG	1 cut(s)	243
MunI	CAATTG	1 cut(s)	346
MvaI	CCWGG	1 cut(s)	243
MvnI	CGCG	1 cut(s)	30
MwoI	GCNNNNNNNGC	3 cut(s)	127, 238, 443
NcoI	CCATGG	1 cut(s)	212
NdeII	GATC	1 cut(s)	173
NlaIII	CATG	2 cut(s)	128, 216
NmuCI	GTSAC	1 cut(s)	43
NsiI	ATGCAT	1 cut(s)	296
PceI	AGGCCT	1 cut(s)	241
PflMI	CCANNNNNTGG	1 cut(s)	242
PkrI	GCNGC	2 cut(s)	120, 498
PleI	GAGTC	2 cut(s)	40, 503
PpsI	GAGTC	2 cut(s)	40, 503
PshAI	GACNNNNGTC	1 cut(s)	14
Psp6I	CCWGG	1 cut(s)	241
PspGI	CCWGG	1 cut(s)	241
PsuI	RGATCY	1 cut(s)	173
RsaI	GTAC	1 cut(s)	257
RsaNI	GTAC	1 cut(s)	256
RseI	CAYNNNNRTG	2 cut(s)	63, 263
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	2 cut(s)	119, 497
Sau3AI	GATC	1 cut(s)	173
SchI	GAGTC	2 cut(s)	40, 503
ScrFI	CCNGG	1 cut(s)	243
SetI	ASST	7 cut(s)	38, 45, 92, 132, 162, 381, 501
SmiMI	CAYNNNNRTG	2 cut(s)	63, 263
SmlI	CTYRAG	1 cut(s)	479
SmoI	CTYRAG	1 cut(s)	479
Sse9I	AATT	3 cut(s)	340, 346, 416
SseBI	AGGCCT	1 cut(s)	241
SsiI	CCGC	2 cut(s)	28, 61
SspMI	CTAG	1 cut(s)	523
StuI	AGGCCT	1 cut(s)	241
StyD4I	CCNGG	1 cut(s)	241
StyI	CCWWGG	2 cut(s)	212, 236
TaiI	ACGT	1 cut(s)	45
TasI	AATT	3 cut(s)	340, 346, 416
TatI	WGTACW	1 cut(s)	255
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	2 cut(s)	118, 496
Tsp45I	GTSAC	1 cut(s)	43
TspDTI	ATGAA	2 cut(s)	294, 324
TspGWI	ACGGA	2 cut(s)	179, 251
Van91I	CCANNNNNTGG	1 cut(s)	242
XspI	CTAG	1 cut(s)	523
Zsp2I	ATGCAT	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.