Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001556

Physical Location & Seq

Genomic Coordinates Reverse (-)

7669633 .. 7672928

Gene Structure 3296 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G007820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2394 bp

ATGGGTGACTCGCGTGTTCTGAGCCGTGTCCACAGCCTCAGGGAGAGGCTCGATGACACACTTTCTGCTCACCGCAATGAGATCTTGGGCTTTCTTTCAAGGATTGAAGCCAAGGGAAAAGGGTTTTTGCAGCCCCATCAGCTGATTGATGAGTTTGAAGCAATTCCTGAAGCCAGCAGGCAAAAATTGTCGGAAGGTGCATTTGGGGAAGTTCTGAAGAACACCCAGGAAGCTATTGTTCTTCCTCCATGGGTGGCACTGGCTGTTCGTCCAAGGCCTGGTGTTTGGGAGTACATTCGGTCAATGTGCACTCACTTGTTGCCGAGGAGTTGCTTGTGCCCGAGTACTTGCACTTCAAAGAGGAGCTTGTCGATGGAAGGTGGTCTCAATGGCAACTTTGTGCTTGAATTGGACTTTGAACCATTCAATGCCTCTTTCCCCAAACCAACTCTTTCCAAATCTATTGGAAATGGTGTCGAGTTCCTCAACCGTCACCTCTCTGCAAAGCTCTTCCATGACAAGGAGAGCATGCACCCACTGCTTGAGTTTCTCCGAGTTCACTGCTACAAGGGCAAGAATATGATGCTGAATGACAGAATTCAGAATGTGAATGCACTTCAACATGTTCTGAGGAAGGCAGAGGAGTTACTGAGTTTTGAGATCAAGTTGCAGGATCTTGGTTTGGAGAGAGGTTGGGGAGACAACGCTGGGCGTGTGCTTGAAATGATCCAACTCCTCTTGGAGCTCCTTGAGGCACCTGATCCTTGCAATCTAGAAAAGTTCCTTGGCAGAATTCCCATGGTGTTCAATGTTGTGATCATGACTCCTCATGGTTACTTTGCCCAAGATGATGTGTTGGGGTACCCCGACACTGGTGGTCAGGTTGTTTATATCTTGGATCAAGTTCGTGCTTTGGAGAATGAGATGCTTAAACGTATCAAGGAACAAGGGCTAGATATCATCCCTCGCATTCTTGTTGTGACAAGGCTCCTTCCTGATGCCGTAGGAACTACTTGTGGTCAGCGTCTTGAGAAGGTGTACAATACCAAACATTCCGATATTCTTCGTGTTCCCTTTAGAACCGAGAAGGGAATTGTCCGCAAATGGATCTCAAGATTCGAAGTGTGGCCATACCTAGAGACTTACACCGAGGATGTTGCAACAGAGCTTGCTAAAGAGTTCCAGGGCAAGCCTGATCTCATTATTGGAAACTACAGTGATGGTAACATTGTGGCCTCATTGTTGGCACATAAATTGAGTGTTACTCAGTGCACCATTGCCCATGCTTTGGAGAAGACAAAGTACCCTGATTCAGACCTTTACTGGAAGAAACTAGACGACAAGTACCACTTCTCTTGCCAGTTCACAGCTGATCTTATCGCCATGAACCACACTGACTTCATTATCACCAGTACCTTCCAGGAGATTGCTGGAAGCAAAGATACTGTTGGTCAGTATGAGAGTCACACCGCCTTCACCATGCCTGGTCTCTACCGTGTTGTTCATGGGATTGATGTCTTTGATCCCAAGTTCAACATTGTTTCACCGGGAGCTGACATGGACATTTACTTCCCTTACACAGAGAAGGAAAAGAGGTTGACACATTTCCACCCTGAAATCGAAGAGCTCATCTACAGCCAAGAGGAGAACAAAGAACACTTGTGTGTGTTGAAGGACAGGAACAAGCCAGTCCTCTTCACAATGGCAAGGCTGGACCGTGTAAAGAACATCACTGGGCTGGTTGAGTGGTATGGTAAGAACAAGAAGCTTAGGGAGCTGGTTAACTTGGTTGTTGTTGCTGGGGATCGCCGAAAGGAGTCCCAGGACAATGAGGAGAAAGCTGAGCTGAAGAAGATGTATGAGCTGATTGACACCTACAAGCTGAATGGCCAGTTCAGATGGATTTCCTCTCAGATGAATCGCGTGAGGAACGGTGAACTCTACCGTGTCATTGCTGACAGCAAGGGAGCTTTTGTGCAGCCTGCTGTGTATGAAGCCTTTGGCTTGACTGTTGTTGAGGCCATGACTTGTGGTTTGCCCACATTTGCTACTTGCAAAGGTGGCCCGGCTGAGATTATTGTGCACGGCAAATCTGGGTACCATATTGATCCATACCACGGTGAGCAAGCTGCTGAGATCCTTGTTGACTTCTTTGAGAAGTGCAAGAAAGACCCTTCTCACTGGGACAAGATTTCCCAGGGAGGCTTGGAGCGTATCTATGAGAAGTACACATGGAAAATCTACTCTGAAAGGCTCTTGACCTTGACCGGAGTTTATGGCTTCTGGAAGCATGTCTCCAACCTTGATCGCCTTGAGAGCCGTCGCTACATTGAAATGTTCTATGCTCTCAAGTATAAAAAGCTGGCTGAGTCTGTTCCTCTTGCTAAGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0001666 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008194 GO:0009266 GO:0009409 GO:0009413 GO:0009414 GO:0009415 GO:0009506 GO:0009628 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009791 GO:0009987 GO:0010033 GO:0010035 GO:0010037 GO:0010038 GO:0010154 GO:0010431 GO:0010555 GO:0016020 GO:0016043 GO:0016157 GO:0016740 GO:0016757 GO:0016758 GO:0021700 GO:0022414 GO:0022607 GO:0030054 GO:0032501 GO:0032502 GO:0032504 GO:0034059 GO:0034284 GO:0034285 GO:0035251 GO:0036293 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0046686 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051259 GO:0051262 GO:0055044 GO:0061458 GO:0065003 GO:0070482 GO:0071695 GO:0071840 GO:0071944 GO:0072347 GO:0072708 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glycos_transf_1 Sucrose_synth

Protein Analysis

797

Amino Acids

91.38

Weight (kDa)

6.61

Isoelectric Point (pI)

33.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SUS_N	PF24861	9 - 100	2.6e-35	Sucrose synthase N-terminal
SUS_EPBD	PF24862	157 - 234	1e-23	Sucrose synthase EPBD domain
GT-B_Sucrose_synth	PF00862	257 - 545	2.7e-170	Sucrose synthase first GT-B domain
Glycos_transf_1	PF00534	558 - 730	4.3e-27	Glycosyl transferases group 1
Glyco_trans_1_4	PF13692	563 - 716	1.4e-11	Glycosyl transferases group 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0001556)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43190 AT3G43190 AT5G20830 AT5G20830 AT5G20830
fragaria_vesca	FvH4_1g07260 FvH4_1g09360 FvH4_1g09360 FvH4_1g09360 FvH4_1g09360 FvH4_1g09360 FvH4_1g09360 FvH4_1g09360 FvH4_1g09360
malus_domestica	MD02G1100500.v1.1 MD02G1100600.v1.1 MD15G1223500.v1.1
prunus_persica	Prupe.2G242300_v2.0.a1 Prupe.7G192300_v2.0.a1 Prupe.7G192300_v2.0.a1 Prupe.7G192300_v2.0.a1 Prupe.7G192300_v2.0.a1 Prupe.7G192300_v2.0.a1 Prupe.7G192300_v2.0.a1
pyrus_communis	pycom02g07890 pycom15g19770
rosa_chinensis	RchiOBHm_Chr2g0093161 RchiOBHm_Chr2g0095901
rosa_laevigata	RLG00000016373 RLG00000016605
rosa_multiflora	Rmu_sc0003724.1_g000005 Rmu_sc0014241.1_g000002 Rmu_sc0038852.1_g000001
rosa_roxburghii	Rroxscaffold_2G00145980 Rroxscaffold_2G00148460
rosa_rugosa	Rorug02G0033300 Rorug02G0053600 Rorug02G0053600 Rorug02G0053700 Rorug02G0053800
rosa_samantha	Rh2AG079000 Rh2AG102900 Rh2BG080300 Rh2BG104300 Rh2CG082500 Rh2CG106800 Rh2DG078000 Rh2DG104500
rosa_wichuraiana	Rw2G006750 Rw2G007820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	861, 2097
AccB1I	GGYRCC	3 cut(s)	754, 861, 2097
AccB7I	CCANNNNNTGG	2 cut(s)	278, 1288
AccII	CGCG	2 cut(s)	13, 1923
AciI	CCGC	3 cut(s)	73, 1099, 1470
AclWI	GGATC	9 cut(s)	681, 721, 755, 906, 1115, 1517, 1812, 2102, 2131
AcoI	YGGCCR	2 cut(s)	1127, 1888
AcsI	RAATTY	2 cut(s)	597, 792
AcuI	CTGAAG	3 cut(s)	189, 236, 1868
AfaI	GTAC	9 cut(s)	293, 346, 863, 1040, 1304, 1346, 1414, 2099, 2228
AfiI	CCNNNNNNNGG	5 cut(s)	278, 520, 872, 1288, 2117
AflIII	ACRYGT	1 cut(s)	622
AjnI	CCWGG	7 cut(s)	225, 277, 1182, 1419, 1483, 1821, 2196
AjuI	GAANNNNNNNTTGG	4 cut(s)	186, 218, 768, 800
AleI	CACNNNNGTG	1 cut(s)	1662
Alw21I	GWGCWC	5 cut(s)	311, 747, 1274, 1629, 2085
Alw26I	GTCTC	5 cut(s)	389, 693, 1133, 1493, 2299
Alw44I	GTGCAC	3 cut(s)	307, 1270, 2081
AlwI	GGATC	9 cut(s)	681, 721, 755, 906, 1115, 1517, 1812, 2102, 2131
Ama87I	CYCGRG	1 cut(s)	340
AoxI	GGCC	6 cut(s)	275, 1127, 1233, 1888, 2019, 2062
ApaLI	GTGCAC	3 cut(s)	307, 1270, 2081
ApeKI	GCWGC	3 cut(s)	130, 1978, 2129
ApoI	RAATTY	2 cut(s)	597, 792
ArsI	GACNNNNNNTTYG	2 cut(s)	2017, 2049
Asp700I	GAANNNNTTC	1 cut(s)	162
Asp718I	GGTACC	2 cut(s)	861, 2097
AspS9I	GGNCC	2 cut(s)	1714, 2063
AsuC2I	CCSGG	2 cut(s)	1548, 2066
AsuHPI	GGTGA	8 cut(s)	17, 62, 485, 1399, 1468, 1536, 1946, 2132
AsuII	TTCGAA	1 cut(s)	1119
AvaI	CYCGRG	1 cut(s)	340
AvaII	GGWCC	1 cut(s)	1714
AxyI	CCTNAGG	1 cut(s)	38
BaeGI	GKGCMC	4 cut(s)	311, 341, 1274, 2085
BalI	TGGCCA	2 cut(s)	1129, 1890
BanI	GGYRCC	3 cut(s)	754, 861, 2097
BanII	GRGCYC	2 cut(s)	747, 1629
BarI	GAAGNNNNNNTAC	6 cut(s)	337, 369, 1286, 1318, 1426, 1458
BbsI	GAAGAC	1 cut(s)	1301
Bbv12I	GWGCWC	5 cut(s)	311, 747, 1274, 1629, 2085
BbvI	GCAGC	3 cut(s)	142, 1990, 2116
BccI	CCATC	4 cut(s)	144, 367, 1214, 1893
BceAI	ACGGC	4 cut(s)	9, 986, 2101, 2304
BcgI	CGANNNNNNTGC	4 cut(s)	543, 577, 1139, 1173
BciT130I	CCWGG	7 cut(s)	227, 279, 1184, 1421, 1485, 1823, 2198
BclI	TGATCA	1 cut(s)	816
BcnI	CCSGG	2 cut(s)	1548, 2066
BcoDI	GTCTC	5 cut(s)	389, 693, 1133, 1493, 2299
BfaI	CTAG	4 cut(s)	773, 953, 1136, 1334
BfmI	CTRYAG	2 cut(s)	1213, 1633
BglII	AGATCT	1 cut(s)	81
BisI	GCNGC	3 cut(s)	131, 1979, 2130
BlpI	GCTNAGC	1 cut(s)	1842
BlsI	GCNGC	3 cut(s)	132, 1980, 2131
BmcAI	AGTACT	1 cut(s)	346
Bme1390I	CCNGG	9 cut(s)	227, 279, 1184, 1421, 1485, 1548, 1823, 2066, 2198
Bme18I	GGWCC	1 cut(s)	1714
BmeT110I	CYCGRG	1 cut(s)	340
BmgT120I	GGNCC	2 cut(s)	1714, 2063
BmiI	GGNNCC	4 cut(s)	756, 863, 989, 2099
BmrFI	CCNGG	9 cut(s)	227, 279, 1184, 1421, 1485, 1548, 1823, 2066, 2198
BmrI	ACTGGG	2 cut(s)	1743, 2191
BmsI	GCATC	3 cut(s)	573, 915, 988
BmuI	ACTGGG	2 cut(s)	1743, 2191
BpiI	GAAGAC	1 cut(s)	1301
BplI	GAGNNNNNCTC	2 cut(s)	1249, 1281
Bpu10I	CCTNAGC	2 cut(s)	1769, 2385
Bpu1102I	GCTNAGC	1 cut(s)	1842
Bpu14I	TTCGAA	1 cut(s)	1119
BpuEI	CTTGAG	6 cut(s)	563, 770, 1049, 1096, 2333, 2333
BpuMI	CCSGG	2 cut(s)	1548, 2066
BsaI	GGTCTC	2 cut(s)	389, 1493
BsaWI	WCCGGW	1 cut(s)	2267
BsaXI	ACNNNNNCTCC	2 cut(s)	1959, 1989
Bsc4I	CCNNNNNNNGG	5 cut(s)	278, 520, 872, 1288, 2117
Bse1I	ACTGG	9 cut(s)	264, 877, 1328, 1360, 1410, 1688, 1738, 1891, 2186
Bse21I	CCTNAGG	1 cut(s)	38
Bse3DI	GCAATG	3 cut(s)	82, 1275, 1950
BseBI	CCWGG	7 cut(s)	227, 279, 1184, 1421, 1485, 1823, 2198
BseGI	GGATG	2 cut(s)	960, 1159
BseLI	CCNNNNNNNGG	5 cut(s)	278, 520, 872, 1288, 2117
BseMI	GCAATG	3 cut(s)	82, 1275, 1950
BseNI	ACTGG	9 cut(s)	264, 877, 1328, 1360, 1410, 1688, 1738, 1891, 2186
BseRI	GAGGAG	7 cut(s)	340, 376, 656, 725, 816, 1658, 1847
BseSI	GKGCMC	4 cut(s)	311, 341, 1274, 2085
BseXI	GCAGC	3 cut(s)	142, 1990, 2116
BseYI	CCCAGC	2 cut(s)	707, 1799
BsgI	GTGCAG	1 cut(s)	1997
Bsh1236I	CGCG	2 cut(s)	13, 1923
BshFI	GGCC	6 cut(s)	277, 1129, 1235, 1890, 2021, 2064
BshNI	GGYRCC	3 cut(s)	754, 861, 2097
BsiHKAI	GWGCWC	5 cut(s)	311, 747, 1274, 1629, 2085
BsiHKCI	CYCGRG	1 cut(s)	340
BsiSI	CCGG	3 cut(s)	1547, 2066, 2268
BslFI	GGGAC	2 cut(s)	1804, 2198
BslI	CCNNNNNNNGG	5 cut(s)	278, 520, 872, 1288, 2117
BsmAI	GTCTC	5 cut(s)	389, 693, 1133, 1493, 2299
BsmFI	GGGAC	2 cut(s)	1804, 2198
BsmI	GAATGC	2 cut(s)	616, 969
BsnI	GGCC	6 cut(s)	277, 1129, 1235, 1890, 2021, 2064
Bso31I	GGTCTC	2 cut(s)	389, 1493
BsoBI	CYCGRG	1 cut(s)	340
Bsp119I	TTCGAA	1 cut(s)	1119
Bsp1286I	GDGCHC	6 cut(s)	311, 341, 747, 1274, 1629, 2085
Bsp1407I	TGTACA	1 cut(s)	1038
Bsp1720I	GCTNAGC	1 cut(s)	1842
Bsp19I	CCATGG	2 cut(s)	248, 798
BspACI	CCGC	3 cut(s)	73, 1099, 1470
BspANI	GGCC	6 cut(s)	277, 1129, 1235, 1890, 2021, 2064
BspFNI	CGCG	2 cut(s)	13, 1923
BspHI	TCATGA	1 cut(s)	819
BspLI	GGNNCC	4 cut(s)	756, 863, 989, 2099
BspPI	GGATC	9 cut(s)	681, 721, 755, 906, 1115, 1517, 1812, 2102, 2131
BspQI	GCTCTTC	2 cut(s)	515, 1617
BspT104I	TTCGAA	1 cut(s)	1119
BspT107I	GGYRCC	3 cut(s)	754, 861, 2097
BspTNI	GGTCTC	2 cut(s)	389, 1493
BsrDI	GCAATG	3 cut(s)	82, 1275, 1950
BsrGI	TGTACA	1 cut(s)	1038
BsrI	ACTGG	9 cut(s)	264, 877, 1328, 1360, 1410, 1688, 1738, 1891, 2186
BssT1I	CCWWGG	5 cut(s)	111, 248, 272, 784, 798
Bst2UI	CCWGG	7 cut(s)	227, 279, 1184, 1421, 1485, 1823, 2198
Bst4CI	ACNGT	9 cut(s)	491, 1217, 1447, 1496, 1718, 1934, 1946, 2011, 2120
Bst6I	CTCTTC	3 cut(s)	515, 1617, 1700
BstAPI	GCANNNNNTGC	1 cut(s)	538
BstAUI	TGTACA	1 cut(s)	1038
BstBI	TTCGAA	1 cut(s)	1119
BstC8I	GCNNGC	8 cut(s)	175, 179, 530, 1170, 1190, 1983, 2127, 2364
BstDSI	CCRYGG	3 cut(s)	248, 798, 2116
BstF5I	GGATG	2 cut(s)	960, 1159
BstFNI	CGCG	2 cut(s)	13, 1923
BstMAI	GTCTC	5 cut(s)	389, 693, 1133, 1493, 2299
BstMWI	GCNNNNNNNGC	6 cut(s)	139, 538, 570, 1774, 2061, 2316
BstNI	CCWGG	7 cut(s)	227, 279, 1184, 1421, 1485, 1823, 2198
BstNSI	RCATGY	3 cut(s)	532, 626, 2294
BstSCI	CCNGG	9 cut(s)	225, 277, 1182, 1419, 1483, 1546, 1821, 2064, 2196
BstSFI	CTRYAG	2 cut(s)	1213, 1633
BstSLI	GKGCMC	4 cut(s)	311, 341, 1274, 2085
BstUI	CGCG	2 cut(s)	13, 1923
BstV1I	GCAGC	3 cut(s)	142, 1990, 2116
BstV2I	GAAGAC	1 cut(s)	1301
BstX2I	RGATCY	4 cut(s)	81, 673, 1107, 2136
BstYI	RGATCY	4 cut(s)	81, 673, 1107, 2136
Bsu36I	CCTNAGG	1 cut(s)	38
BsuRI	GGCC	6 cut(s)	277, 1129, 1235, 1890, 2021, 2064
BtgI	CCRYGG	3 cut(s)	248, 798, 2116
BtsCI	GGATG	2 cut(s)	960, 1159
BtsI	GCAGTG	2 cut(s)	536, 559
BtsIMutI	CAGTG	9 cut(s)	257, 536, 559, 870, 1222, 1274, 1392, 1731, 2179
Cac8I	GCNNGC	8 cut(s)	175, 179, 530, 1170, 1190, 1983, 2127, 2364
CciI	TCATGA	1 cut(s)	819
Cfr13I	GGNCC	2 cut(s)	1714, 2063
CseI	GACGC	1 cut(s)	1013
Csp6I	GTAC	9 cut(s)	292, 345, 862, 1039, 1303, 1345, 1413, 2098, 2227
CspCI	CAANNNNNGTGG	2 cut(s)	1337, 1372
CviQI	GTAC	9 cut(s)	292, 345, 862, 1039, 1303, 1345, 1413, 2098, 2227
EaeI	YGGCCR	2 cut(s)	1127, 1888
Eam1104I	CTCTTC	3 cut(s)	515, 1617, 1700
EarI	CTCTTC	3 cut(s)	515, 1617, 1700
Ecl136II	GAGCTC	2 cut(s)	745, 1627
Eco130I	CCWWGG	5 cut(s)	111, 248, 272, 784, 798
Eco147I	AGGCCT	1 cut(s)	277
Eco24I	GRGCYC	2 cut(s)	747, 1629
Eco31I	GGTCTC	2 cut(s)	389, 1493
Eco32I	GATATC	1 cut(s)	958
Eco47I	GGWCC	1 cut(s)	1714
Eco53kI	GAGCTC	2 cut(s)	745, 1627
Eco57I	CTGAAG	3 cut(s)	189, 236, 1868
Eco81I	CCTNAGG	1 cut(s)	38
Eco88I	CYCGRG	1 cut(s)	340
EcoICRI	GAGCTC	2 cut(s)	745, 1627
EcoRI	GAATTC	2 cut(s)	597, 792
EcoRII	CCWGG	7 cut(s)	225, 277, 1182, 1419, 1483, 1821, 2196
EcoRV	GATATC	1 cut(s)	958
EcoT14I	CCWWGG	5 cut(s)	111, 248, 272, 784, 798
EcoT38I	GRGCYC	2 cut(s)	747, 1629
ErhI	CCWWGG	5 cut(s)	111, 248, 272, 784, 798
FalI	AAGNNNNNCTT	4 cut(s)	350, 382, 1334, 1366
FaqI	GGGAC	2 cut(s)	1804, 2198
FbaI	TGATCA	1 cut(s)	816
Fnu4HI	GCNGC	3 cut(s)	131, 1979, 2130
FokI	GGATG	2 cut(s)	947, 1166
FriOI	GRGCYC	2 cut(s)	747, 1629
Fsp4HI	GCNGC	3 cut(s)	131, 1979, 2130
FspBI	CTAG	4 cut(s)	773, 953, 1136, 1334
GluI	GCNGC	3 cut(s)	131, 1979, 2130
GsaI	CCCAGC	2 cut(s)	711, 1803
HaeIII	GGCC	6 cut(s)	277, 1129, 1235, 1890, 2021, 2064
HapII	CCGG	3 cut(s)	1547, 2066, 2268
HgaI	GACGC	1 cut(s)	1013
HincII	GTYRAC	3 cut(s)	1599, 1783, 2146
HindII	GTYRAC	3 cut(s)	1599, 1783, 2146
HindIII	AAGCTT	1 cut(s)	1766
HinfI	GANTC	8 cut(s)	8, 823, 1116, 1310, 1462, 1817, 1918, 2369
HpaI	GTTAAC	1 cut(s)	1783
HpaII	CCGG	3 cut(s)	1547, 2066, 2268
HphI	GGTGA	8 cut(s)	17, 62, 485, 1399, 1468, 1536, 1946, 2132
Hpy188III	TCNNGA	8 cut(s)	167, 773, 820, 995, 1028, 1113, 2257, 2284
Hpy99I	CGWCG	1 cut(s)	2325
HpyCH4III	ACNGT	9 cut(s)	491, 1217, 1447, 1496, 1718, 1934, 1946, 2011, 2120
HpyCH4IV	ACGT	1 cut(s)	934
HpyF10VI	GCNNNNNNNGC	6 cut(s)	139, 538, 570, 1774, 2061, 2316
HpySE526I	ACGT	1 cut(s)	934
KpnI	GGTACC	2 cut(s)	865, 2101
Ksp22I	TGATCA	1 cut(s)	816
KspAI	GTTAAC	1 cut(s)	1783
LguI	GCTCTTC	2 cut(s)	515, 1617
LmnI	GCTCC	8 cut(s)	363, 742, 750, 993, 1550, 1774, 1967, 2209
Lsp1109I	GCAGC	3 cut(s)	142, 1990, 2116
LweI	GCATC	3 cut(s)	573, 915, 988
MaeI	CTAG	4 cut(s)	773, 953, 1136, 1334
MaeII	ACGT	1 cut(s)	934
MaeIII	GTNAC	8 cut(s)	5, 491, 645, 833, 979, 1223, 1261, 1463
MflI	RGATCY	4 cut(s)	81, 673, 1107, 2136
MhlI	GDGCHC	6 cut(s)	311, 341, 747, 1274, 1629, 2085
MlsI	TGGCCA	2 cut(s)	1129, 1890
MluCI	AATT	7 cut(s)	162, 185, 407, 597, 792, 1092, 1253
MluNI	TGGCCA	2 cut(s)	1129, 1890
MlyI	GAGTC	5 cut(s)	2, 817, 1471, 1826, 2378
MmeI	TCCRAC	3 cut(s)	171, 754, 2322
Mox20I	TGGCCA	2 cut(s)	1129, 1890
MroXI	GAANNNNTTC	1 cut(s)	162
MscI	TGGCCA	2 cut(s)	1129, 1890
MseI	TTAA	2 cut(s)	930, 1782
MslI	CAYNNNNRTG	3 cut(s)	75, 1662, 2333
Msp20I	TGGCCA	2 cut(s)	1129, 1890
MspA1I	CMGCKG	2 cut(s)	142, 1370
MspI	CCGG	3 cut(s)	1547, 2066, 2268
MspR9I	CCNGG	9 cut(s)	227, 279, 1184, 1421, 1485, 1548, 1823, 2066, 2198
Mva1269I	GAATGC	2 cut(s)	616, 969
MvaI	CCWGG	7 cut(s)	227, 279, 1184, 1421, 1485, 1823, 2198
MvnI	CGCG	2 cut(s)	13, 1923
MwoI	GCNNNNNNNGC	6 cut(s)	139, 538, 570, 1774, 2061, 2316
NciI	CCSGG	2 cut(s)	1548, 2066
NcoI	CCATGG	2 cut(s)	248, 798
NlaIV	GGNNCC	4 cut(s)	756, 863, 989, 2099
NmeAIII	GCCGAG	1 cut(s)	348
NmuCI	GTSAC	4 cut(s)	5, 491, 979, 1463
NspI	RCATGY	3 cut(s)	532, 626, 2294
NspV	TTCGAA	1 cut(s)	1119
OliI	CACNNNNGTG	1 cut(s)	1662
PaeI	GCATGC	1 cut(s)	532
PagI	TCATGA	1 cut(s)	819
PasI	CCCWGGG	1 cut(s)	2197
PceI	AGGCCT	1 cut(s)	277
PciI	ACATGT	1 cut(s)	622
PciSI	GCTCTTC	2 cut(s)	515, 1617
PctI	GAATGC	2 cut(s)	616, 969
PdmI	GAANNNNTTC	1 cut(s)	162
PfeI	GAWTC	3 cut(s)	1116, 1310, 1918
PflMI	CCANNNNNTGG	2 cut(s)	278, 1288
PfoI	TCCNGGA	1 cut(s)	1419
PkrI	GCNGC	3 cut(s)	132, 1980, 2131
PleI	GAGTC	5 cut(s)	2, 817, 1470, 1825, 2377
PpsI	GAGTC	5 cut(s)	2, 817, 1470, 1825, 2377
PscI	ACATGT	1 cut(s)	622
Psp124BI	GAGCTC	2 cut(s)	747, 1629
Psp6I	CCWGG	7 cut(s)	225, 277, 1182, 1419, 1483, 1821, 2196
PspFI	CCCAGC	2 cut(s)	707, 1799
PspGI	CCWGG	7 cut(s)	225, 277, 1182, 1419, 1483, 1821, 2196
PspN4I	GGNNCC	4 cut(s)	756, 863, 989, 2099
PspPI	GGNCC	2 cut(s)	1714, 2063
PsuI	RGATCY	4 cut(s)	81, 673, 1107, 2136
PvuII	CAGCTG	2 cut(s)	142, 1370
RsaI	GTAC	9 cut(s)	293, 346, 863, 1040, 1304, 1346, 1414, 2099, 2228
RsaNI	GTAC	9 cut(s)	292, 345, 862, 1039, 1303, 1345, 1413, 2098, 2227
RseI	CAYNNNNRTG	3 cut(s)	75, 1662, 2333
SacI	GAGCTC	2 cut(s)	747, 1629
SapI	GCTCTTC	2 cut(s)	515, 1617
SaqAI	TTAA	2 cut(s)	930, 1782
SatI	GCNGC	3 cut(s)	131, 1979, 2130
Sau96I	GGNCC	2 cut(s)	1714, 2063
ScaI	AGTACT	1 cut(s)	346
SchI	GAGTC	5 cut(s)	2, 817, 1471, 1826, 2378
ScrFI	CCNGG	9 cut(s)	227, 279, 1184, 1421, 1485, 1548, 1823, 2066, 2198
SduI	GDGCHC	6 cut(s)	311, 341, 747, 1274, 1629, 2085
SfaNI	GCATC	3 cut(s)	573, 915, 988
SfcI	CTRYAG	2 cut(s)	1213, 1633
SfuI	TTCGAA	1 cut(s)	1119
SinI	GGWCC	1 cut(s)	1714
SmiMI	CAYNNNNRTG	3 cut(s)	75, 1662, 2333
SmlI	CTYRAG	6 cut(s)	542, 749, 1028, 1111, 2312, 2348
SmoI	CTYRAG	6 cut(s)	542, 749, 1028, 1111, 2312, 2348
SphI	GCATGC	1 cut(s)	532
Sse9I	AATT	7 cut(s)	162, 185, 407, 597, 792, 1092, 1253
SseBI	AGGCCT	1 cut(s)	277
SsiI	CCGC	3 cut(s)	73, 1099, 1470
SspMI	CTAG	4 cut(s)	773, 953, 1136, 1334
SstI	GAGCTC	2 cut(s)	747, 1629
StuI	AGGCCT	1 cut(s)	277
StyD4I	CCNGG	9 cut(s)	225, 277, 1182, 1419, 1483, 1546, 1821, 2064, 2196
StyI	CCWWGG	5 cut(s)	111, 248, 272, 784, 798
TaaI	ACNGT	9 cut(s)	491, 1217, 1447, 1496, 1718, 1934, 1946, 2011, 2120
TaiI	ACGT	1 cut(s)	937
TaqI	TCGA	5 cut(s)	51, 371, 477, 1119, 1620
TaqII	GACCGA	1 cut(s)	288
TasI	AATT	7 cut(s)	162, 185, 407, 597, 792, 1092, 1253
TatI	WGTACW	4 cut(s)	291, 344, 1038, 2226
TfiI	GAWTC	3 cut(s)	1116, 1310, 1918
Tru1I	TTAA	2 cut(s)	930, 1782
Tru9I	TTAA	2 cut(s)	930, 1782
TscAI	CASTG	9 cut(s)	264, 543, 566, 877, 1222, 1274, 1399, 1738, 2186
TseFI	GTSAC	4 cut(s)	5, 491, 979, 1463
TseI	GCWGC	3 cut(s)	130, 1978, 2129
Tsp45I	GTSAC	4 cut(s)	5, 491, 979, 1463
TspDTI	ATGAA	5 cut(s)	1390, 1400, 1493, 1931, 2007
TspRI	CASTG	9 cut(s)	264, 543, 566, 877, 1222, 1274, 1399, 1738, 2186
Van91I	CCANNNNNTGG	2 cut(s)	278, 1288
VneI	GTGCAC	3 cut(s)	307, 1270, 2081
VpaK11BI	GGWCC	1 cut(s)	1714
XapI	RAATTY	2 cut(s)	597, 792
XbaI	TCTAGA	1 cut(s)	772
XceI	RCATGY	3 cut(s)	532, 626, 2294
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1427
XmnI	GAANNNNTTC	1 cut(s)	162
XspI	CTAG	4 cut(s)	773, 953, 1136, 1334
ZrmI	AGTACT	1 cut(s)	346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.