transport protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G01810 AT4G01810 AT4G01810 |
| fragaria_vesca | FvH4_1g26250 FvH4_1g26250 FvH4_1g26250 FvH4_1g26250 FvH4_1g26250 |
| malus_domestica | MD09G1290300.v1.1 MD17G1284900.v1.1 |
| prunus_persica | Prupe.3G002800_v2.0.a1 Prupe.3G002800_v2.0.a1 Prupe.3G002800_v2.0.a1 Prupe.3G002800_v2.0.a1 |
| pyrus_communis | pycom09g19810 pycom17g28070 |
| rosa_chinensis | RchiOBHm_Chr3g0485911 |
| rosa_laevigata | RLG00000023123 |
| rosa_multiflora | Rmu_sc0004876.1_g000006 Rmu_sc0012870.1_g000011 |
| rosa_roxburghii | Rroxscaffold_6G00396210 |
| rosa_rugosa | Rorug03G0222000 Rorug03G0222100 Rorug03G0222200 Rorug03G0222300 |
| rosa_samantha | Rh3AG271700 Rh3BG306700 Rh3DG301400 |
| rosa_wichuraiana | Rw0G015510 Rw3G024140 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 358 |
| Acc36I | ACCTGC | 1 cut(s) | 358 |
| AccB1I | GGYRCC | 2 cut(s) | 1203, 2647 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 245 |
| AccII | CGCG | 1 cut(s) | 2491 |
| AciI | CCGC | 8 cut(s) | 645, 1841, 2170, 2387, 2425, 2491, 2543, 2572 |
| AclWI | GGATC | 7 cut(s) | 201, 617, 1351, 2437, 2450, 2507, 2520 |
| AcoI | YGGCCR | 1 cut(s) | 2143 |
| AcsI | RAATTY | 2 cut(s) | 123, 2030 |
| AcuI | CTGAAG | 1 cut(s) | 2427 |
| AfaI | GTAC | 4 cut(s) | 283, 1488, 1802, 2631 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 62, 245, 318, 557, 1213, 2128, 2129, 2424 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 299 |
| AjnI | CCWGG | 8 cut(s) | 154, 289, 580, 1045, 1206, 1339, 1586, 1660 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1054, 1086, 1108, 1140 |
| Alw21I | GWGCWC | 3 cut(s) | 163, 2100, 2415 |
| Alw26I | GTCTC | 6 cut(s) | 79, 1046, 1116, 1269, 1736, 2086 |
| AlwI | GGATC | 7 cut(s) | 201, 617, 1351, 2437, 2450, 2507, 2520 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 845 |
| Ama87I | CYCGRG | 3 cut(s) | 116, 379, 1266 |
| AoxI | GGCC | 6 cut(s) | 320, 1163, 1247, 1321, 2119, 2143 |
| ApoI | RAATTY | 2 cut(s) | 123, 2030 |
| AspLEI | GCGC | 2 cut(s) | 1466, 2221 |
| AspS9I | GGNCC | 6 cut(s) | 293, 1247, 1322, 1337, 1658, 2120 |
| AsuC2I | CCSGG | 3 cut(s) | 380, 381, 828 |
| AsuHPI | GGTGA | 9 cut(s) | 228, 339, 483, 570, 588, 1050, 1358, 1676, 2407 |
| AvaI | CYCGRG | 3 cut(s) | 116, 379, 1266 |
| AvaII | GGWCC | 3 cut(s) | 293, 1337, 1658 |
| BaeGI | GKGCMC | 1 cut(s) | 1214 |
| BalI | TGGCCA | 1 cut(s) | 2145 |
| BamHI | GGATCC | 2 cut(s) | 2442, 2512 |
| BanI | GGYRCC | 2 cut(s) | 1203, 2647 |
| BanII | GRGCYC | 4 cut(s) | 163, 386, 2100, 2415 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1787, 1819 |
| BauI | CACGAG | 1 cut(s) | 1424 |
| BbsI | GAAGAC | 1 cut(s) | 2320 |
| Bbv12I | GWGCWC | 3 cut(s) | 163, 2100, 2415 |
| BbvCI | CCTCAGC | 1 cut(s) | 360 |
| BccI | CCATC | 4 cut(s) | 31, 217, 1258, 1402 |
| BceAI | ACGGC | 2 cut(s) | 65, 1230 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1201, 1235 |
| BciT130I | CCWGG | 8 cut(s) | 156, 291, 582, 1047, 1208, 1341, 1588, 1662 |
| BciVI | GTATCC | 1 cut(s) | 59 |
| BclI | TGATCA | 1 cut(s) | 2311 |
| BcnI | CCSGG | 3 cut(s) | 380, 381, 828 |
| BcoDI | GTCTC | 6 cut(s) | 79, 1046, 1116, 1269, 1736, 2086 |
| BfaI | CTAG | 4 cut(s) | 680, 1194, 2613, 2665 |
| BfmI | CTRYAG | 1 cut(s) | 1236 |
| BfoI | RGCGCY | 1 cut(s) | 2222 |
| BfuAI | ACCTGC | 1 cut(s) | 358 |
| BfuI | GTATCC | 1 cut(s) | 59 |
| BglII | AGATCT | 2 cut(s) | 760, 2159 |
| BmcAI | AGTACT | 1 cut(s) | 283 |
| Bme18I | GGWCC | 3 cut(s) | 293, 1337, 1658 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 299 |
| BmeT110I | CYCGRG | 3 cut(s) | 116, 379, 1266 |
| BmgT120I | GGNCC | 6 cut(s) | 293, 1247, 1322, 1337, 1658, 2120 |
| BmiI | GGNNCC | 6 cut(s) | 1205, 1600, 1659, 2444, 2514, 2649 |
| BmrI | ACTGGG | 3 cut(s) | 546, 822, 833 |
| BmsI | GCATC | 8 cut(s) | 239, 1037, 1423, 1589, 1966, 2198, 2245, 2284 |
| BmuI | ACTGGG | 3 cut(s) | 546, 822, 833 |
| BpiI | GAAGAC | 1 cut(s) | 2320 |
| BpmI | CTGGAG | 2 cut(s) | 1308, 2637 |
| Bpu10I | CCTNAGC | 2 cut(s) | 360, 685 |
| BpuEI | CTTGAG | 3 cut(s) | 1632, 2025, 2659 |
| BpuMI | CCSGG | 3 cut(s) | 380, 381, 828 |
| Bsa29I | ATCGAT | 1 cut(s) | 1022 |
| BsaBI | GATNNNNATC | 1 cut(s) | 627 |
| BsaI | GGTCTC | 1 cut(s) | 2086 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 62, 245, 318, 557, 1213, 2128, 2129, 2424 |
| Bse118I | RCCGGY | 1 cut(s) | 2500 |
| Bse1I | ACTGG | 6 cut(s) | 262, 365, 552, 817, 839, 1807 |
| Bse8I | GATNNNNATC | 1 cut(s) | 627 |
| BseBI | CCWGG | 8 cut(s) | 156, 291, 582, 1047, 1208, 1341, 1588, 1662 |
| BseCI | ATCGAT | 1 cut(s) | 1022 |
| BseGI | GGATG | 4 cut(s) | 472, 901, 1413, 2189 |
| BseJI | GATNNNNATC | 1 cut(s) | 627 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 62, 245, 318, 557, 1213, 2128, 2129, 2424 |
| BseMII | CTCAG | 6 cut(s) | 374, 522, 620, 699, 1782, 2483 |
| BseNI | ACTGG | 6 cut(s) | 262, 365, 552, 817, 839, 1807 |
| BseRI | GAGGAG | 4 cut(s) | 348, 594, 1284, 2427 |
| BseSI | GKGCMC | 1 cut(s) | 1214 |
| BseYI | CCCAGC | 2 cut(s) | 749, 1466 |
| BsgI | GTGCAG | 2 cut(s) | 846, 2394 |
| Bsh1236I | CGCG | 1 cut(s) | 2491 |
| BshFI | GGCC | 6 cut(s) | 322, 1165, 1249, 1323, 2121, 2145 |
| BshNI | GGYRCC | 2 cut(s) | 1203, 2647 |
| BshVI | ATCGAT | 1 cut(s) | 1022 |
| BsiHKAI | GWGCWC | 3 cut(s) | 163, 2100, 2415 |
| BsiHKCI | CYCGRG | 3 cut(s) | 116, 379, 1266 |
| BsiSI | CCGG | 4 cut(s) | 319, 380, 828, 2501 |
| BslFI | GGGAC | 2 cut(s) | 1483, 1793 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 62, 245, 318, 557, 1213, 2128, 2129, 2424 |
| BsmAI | GTCTC | 6 cut(s) | 79, 1046, 1116, 1269, 1736, 2086 |
| BsmFI | GGGAC | 2 cut(s) | 1483, 1793 |
| BsnI | GGCC | 6 cut(s) | 322, 1165, 1249, 1323, 2121, 2145 |
| Bso31I | GGTCTC | 1 cut(s) | 2086 |
| BsoBI | CYCGRG | 3 cut(s) | 116, 379, 1266 |
| Bsp1286I | GDGCHC | 5 cut(s) | 163, 386, 1214, 2100, 2415 |
| Bsp19I | CCATGG | 1 cut(s) | 792 |
| BspACI | CCGC | 8 cut(s) | 645, 1841, 2170, 2387, 2425, 2491, 2543, 2572 |
| BspANI | GGCC | 6 cut(s) | 322, 1165, 1249, 1323, 2121, 2145 |
| BspCNI | CTCAG | 6 cut(s) | 373, 521, 619, 698, 1783, 2482 |
| BspDI | ATCGAT | 1 cut(s) | 1022 |
| BspFNI | CGCG | 1 cut(s) | 2491 |
| BspHI | TCATGA | 1 cut(s) | 1687 |
| BspLI | GGNNCC | 6 cut(s) | 1205, 1600, 1659, 2444, 2514, 2649 |
| BspMI | ACCTGC | 1 cut(s) | 358 |
| BspPI | GGATC | 7 cut(s) | 201, 617, 1351, 2437, 2450, 2507, 2520 |
| BspQI | GCTCTTC | 1 cut(s) | 2403 |
| BspT107I | GGYRCC | 2 cut(s) | 1203, 2647 |
| BspTNI | GGTCTC | 1 cut(s) | 2086 |
| BsrFI | RCCGGY | 1 cut(s) | 2500 |
| BsrI | ACTGG | 6 cut(s) | 262, 365, 552, 817, 839, 1807 |
| BssAI | RCCGGY | 1 cut(s) | 2500 |
| BssSI | CACGAG | 1 cut(s) | 1424 |
| BssT1I | CCWWGG | 3 cut(s) | 179, 792, 1764 |
| Bst2BI | CACGAG | 1 cut(s) | 1424 |
| Bst2UI | CCWGG | 8 cut(s) | 156, 291, 582, 1047, 1208, 1341, 1588, 1662 |
| Bst4CI | ACNGT | 5 cut(s) | 641, 994, 1447, 1821, 1879 |
| Bst6I | CTCTTC | 5 cut(s) | 1662, 1734, 1937, 2110, 2403 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1901 |
| BstC8I | GCNNGC | 8 cut(s) | 324, 933, 1122, 1597, 1959, 1992, 2268, 2392 |
| BstDEI | CTNAG | 8 cut(s) | 360, 508, 606, 685, 1730, 1791, 2111, 2469 |
| BstDSI | CCRYGG | 3 cut(s) | 47, 792, 1603 |
| BstF5I | GGATG | 4 cut(s) | 472, 901, 1413, 2189 |
| BstFNI | CGCG | 1 cut(s) | 2491 |
| BstH2I | RGCGCY | 1 cut(s) | 2222 |
| BstHHI | GCGC | 2 cut(s) | 1466, 2221 |
| BstMAI | GTCTC | 6 cut(s) | 79, 1046, 1116, 1269, 1736, 2086 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 350, 642, 1901, 2351, 2384, 2387, 2578 |
| BstNI | CCWGG | 8 cut(s) | 156, 291, 582, 1047, 1208, 1341, 1588, 1662 |
| BstNSI | RCATGY | 4 cut(s) | 935, 1124, 1145, 1476 |
| BstSFI | CTRYAG | 1 cut(s) | 1236 |
| BstSLI | GKGCMC | 1 cut(s) | 1214 |
| BstUI | CGCG | 1 cut(s) | 2491 |
| BstV2I | GAAGAC | 1 cut(s) | 2320 |
| BstX2I | RGATCY | 5 cut(s) | 760, 1343, 2159, 2442, 2512 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 909 |
| BstYI | RGATCY | 5 cut(s) | 760, 1343, 2159, 2442, 2512 |
| Bsu15I | ATCGAT | 1 cut(s) | 1022 |
| BsuI | GTATCC | 1 cut(s) | 59 |
| BsuRI | GGCC | 6 cut(s) | 322, 1165, 1249, 1323, 2121, 2145 |
| BsuTUI | ATCGAT | 1 cut(s) | 1022 |
| BtgI | CCRYGG | 3 cut(s) | 47, 792, 1603 |
| BtgZI | GCGATG | 2 cut(s) | 90, 614 |
| BtsCI | GGATG | 4 cut(s) | 472, 901, 1413, 2189 |
| BtsI | GCAGTG | 2 cut(s) | 704, 1127 |
| BtsIMutI | CAGTG | 3 cut(s) | 698, 704, 1127 |
| BveI | ACCTGC | 1 cut(s) | 358 |
| Cac8I | GCNNGC | 8 cut(s) | 324, 933, 1122, 1597, 1959, 1992, 2268, 2392 |
| CaiI | CAGNNNCTG | 1 cut(s) | 845 |
| CciI | TCATGA | 1 cut(s) | 1687 |
| CfoI | GCGC | 2 cut(s) | 1466, 2221 |
| Cfr10I | RCCGGY | 1 cut(s) | 2500 |
| Cfr13I | GGNCC | 6 cut(s) | 293, 1247, 1322, 1337, 1658, 2120 |
| Cfr9I | CCCGGG | 1 cut(s) | 379 |
| ClaI | ATCGAT | 1 cut(s) | 1022 |
| CseI | GACGC | 1 cut(s) | 465 |
| Csp6I | GTAC | 4 cut(s) | 282, 1487, 1801, 2630 |
| CviQI | GTAC | 4 cut(s) | 282, 1487, 1801, 2630 |
| DdeI | CTNAG | 8 cut(s) | 360, 508, 606, 685, 1730, 1791, 2111, 2469 |
| DraI | TTTAAA | 2 cut(s) | 1827, 2184 |
| DriI | GACNNNNNGTC | 1 cut(s) | 299 |
| EaeI | YGGCCR | 1 cut(s) | 2143 |
| Eam1104I | CTCTTC | 5 cut(s) | 1662, 1734, 1937, 2110, 2403 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 299 |
| EarI | CTCTTC | 5 cut(s) | 1662, 1734, 1937, 2110, 2403 |
| Ecl136II | GAGCTC | 3 cut(s) | 161, 2098, 2413 |
| Eco130I | CCWWGG | 3 cut(s) | 179, 792, 1764 |
| Eco24I | GRGCYC | 4 cut(s) | 163, 386, 2100, 2415 |
| Eco31I | GGTCTC | 1 cut(s) | 2086 |
| Eco47I | GGWCC | 3 cut(s) | 293, 1337, 1658 |
| Eco53kI | GAGCTC | 3 cut(s) | 161, 2098, 2413 |
| Eco57I | CTGAAG | 1 cut(s) | 2427 |
| Eco88I | CYCGRG | 3 cut(s) | 116, 379, 1266 |
| EcoICRI | GAGCTC | 3 cut(s) | 161, 2098, 2413 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1658 |
| EcoRII | CCWGG | 8 cut(s) | 154, 289, 580, 1045, 1206, 1339, 1586, 1660 |
| EcoT14I | CCWWGG | 3 cut(s) | 179, 792, 1764 |
| EcoT22I | ATGCAT | 4 cut(s) | 232, 1122, 2191, 2238 |
| EcoT38I | GRGCYC | 4 cut(s) | 163, 386, 2100, 2415 |
| ErhI | CCWWGG | 3 cut(s) | 179, 792, 1764 |
| FaqI | GGGAC | 2 cut(s) | 1483, 1793 |
| FauI | CCCGC | 1 cut(s) | 2550 |
| FauNDI | CATATG | 4 cut(s) | 496, 1333, 1383, 1677 |
| FbaI | TGATCA | 1 cut(s) | 2311 |
| FokI | GGATG | 4 cut(s) | 479, 908, 1420, 2176 |
| FriOI | GRGCYC | 4 cut(s) | 163, 386, 2100, 2415 |
| FspBI | CTAG | 4 cut(s) | 680, 1194, 2613, 2665 |
| GlaI | GCGC | 2 cut(s) | 1465, 2220 |
| GsaI | CCCAGC | 2 cut(s) | 753, 1470 |
| GsuI | CTGGAG | 2 cut(s) | 1308, 2637 |
| HaeII | RGCGCY | 1 cut(s) | 2222 |
| HaeIII | GGCC | 6 cut(s) | 322, 1165, 1249, 1323, 2121, 2145 |
| HapII | CCGG | 4 cut(s) | 319, 380, 828, 2501 |
| HgaI | GACGC | 1 cut(s) | 465 |
| HhaI | GCGC | 2 cut(s) | 1466, 2221 |
| Hin6I | GCGC | 2 cut(s) | 1464, 2219 |
| HinP1I | GCGC | 2 cut(s) | 1464, 2219 |
| HincII | GTYRAC | 1 cut(s) | 1453 |
| HindII | GTYRAC | 1 cut(s) | 1453 |
| HindIII | AAGCTT | 3 cut(s) | 1188, 1512, 2635 |
| HpaII | CCGG | 4 cut(s) | 319, 380, 828, 2501 |
| HphI | GGTGA | 9 cut(s) | 228, 339, 483, 570, 588, 1050, 1358, 1676, 2407 |
| Hpy166II | GTNNAC | 4 cut(s) | 1453, 1567, 1801, 1812 |
| Hpy188I | TCNGA | 9 cut(s) | 609, 847, 1015, 1630, 1975, 2028, 2210, 2293, 2442 |
| Hpy8I | GTNNAC | 4 cut(s) | 1453, 1567, 1801, 1812 |
| HpyAV | CCTTC | 8 cut(s) | 66, 213, 579, 1072, 1705, 2237, 2357, 2453 |
| HpyCH4III | ACNGT | 5 cut(s) | 641, 994, 1447, 1821, 1879 |
| HpyCH4IV | ACGT | 2 cut(s) | 619, 1621 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 350, 642, 1901, 2351, 2384, 2387, 2578 |
| HpyF3I | CTNAG | 8 cut(s) | 360, 508, 606, 685, 1730, 1791, 2111, 2469 |
| HpySE526I | ACGT | 2 cut(s) | 619, 1621 |
| HspAI | GCGC | 2 cut(s) | 1464, 2219 |
| Ksp22I | TGATCA | 1 cut(s) | 2311 |
| LguI | GCTCTTC | 1 cut(s) | 2403 |
| LweI | GCATC | 8 cut(s) | 239, 1037, 1423, 1589, 1966, 2198, 2245, 2284 |
| MaeI | CTAG | 4 cut(s) | 680, 1194, 2613, 2665 |
| MaeII | ACGT | 2 cut(s) | 619, 1621 |
| MaeIII | GTNAC | 4 cut(s) | 426, 457, 1364, 1421 |
| MfeI | CAATTG | 1 cut(s) | 1980 |
| MflI | RGATCY | 5 cut(s) | 760, 1343, 2159, 2442, 2512 |
| MhlI | GDGCHC | 5 cut(s) | 163, 386, 1214, 2100, 2415 |
| MlsI | TGGCCA | 1 cut(s) | 2145 |
| MluNI | TGGCCA | 1 cut(s) | 2145 |
| MlyI | GAGTC | 1 cut(s) | 1942 |
| MmeI | TCCRAC | 1 cut(s) | 463 |
| Mox20I | TGGCCA | 1 cut(s) | 2145 |
| Mph1103I | ATGCAT | 4 cut(s) | 232, 1122, 2191, 2238 |
| MscI | TGGCCA | 1 cut(s) | 2145 |
| MseI | TTAA | 5 cut(s) | 146, 1278, 1826, 2013, 2183 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1724, 2151 |
| Msp20I | TGGCCA | 1 cut(s) | 2145 |
| MspA1I | CMGCKG | 2 cut(s) | 2378, 2572 |
| MspI | CCGG | 4 cut(s) | 319, 380, 828, 2501 |
| MunI | CAATTG | 1 cut(s) | 1980 |
| MvaI | CCWGG | 8 cut(s) | 156, 291, 582, 1047, 1208, 1341, 1588, 1662 |
| MvnI | CGCG | 1 cut(s) | 2491 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 350, 642, 1901, 2351, 2384, 2387, 2578 |
| NciI | CCSGG | 3 cut(s) | 380, 381, 828 |
| NcoI | CCATGG | 1 cut(s) | 792 |
| NdeI | CATATG | 4 cut(s) | 496, 1333, 1383, 1677 |
| NlaIV | GGNNCC | 6 cut(s) | 1205, 1600, 1659, 2444, 2514, 2649 |
| NmeAIII | GCCGAG | 1 cut(s) | 737 |
| NmuCI | GTSAC | 3 cut(s) | 426, 1364, 1421 |
| NsiI | ATGCAT | 4 cut(s) | 232, 1122, 2191, 2238 |
| NspI | RCATGY | 4 cut(s) | 935, 1124, 1145, 1476 |
| PaeI | GCATGC | 2 cut(s) | 935, 1124 |
| PaeR7I | CTCGAG | 1 cut(s) | 1266 |
| PagI | TCATGA | 1 cut(s) | 1687 |
| PaqCI | CACCTGC | 1 cut(s) | 358 |
| PciSI | GCTCTTC | 1 cut(s) | 2403 |
| PfeI | GAWTC | 9 cut(s) | 29, 488, 848, 944, 1019, 1070, 1180, 1302, 2538 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 245 |
| PfoI | TCCNGGA | 2 cut(s) | 1045, 1339 |
| PleI | GAGTC | 1 cut(s) | 1942 |
| PpsI | GAGTC | 1 cut(s) | 1942 |
| PpuMI | RGGWCCY | 1 cut(s) | 1658 |
| Psp124BI | GAGCTC | 3 cut(s) | 163, 2100, 2415 |
| Psp5II | RGGWCCY | 1 cut(s) | 1658 |
| Psp6I | CCWGG | 8 cut(s) | 154, 289, 580, 1045, 1206, 1339, 1586, 1660 |
| PspFI | CCCAGC | 2 cut(s) | 749, 1466 |
| PspGI | CCWGG | 8 cut(s) | 154, 289, 580, 1045, 1206, 1339, 1586, 1660 |
| PspN4I | GGNNCC | 6 cut(s) | 1205, 1600, 1659, 2444, 2514, 2649 |
| PspPI | GGNCC | 6 cut(s) | 293, 1247, 1322, 1337, 1658, 2120 |
| PspPPI | RGGWCCY | 1 cut(s) | 1658 |
| PstNI | CAGNNNCTG | 1 cut(s) | 845 |
| PsuI | RGATCY | 5 cut(s) | 760, 1343, 2159, 2442, 2512 |
| PvuII | CAGCTG | 1 cut(s) | 2378 |
| RsaI | GTAC | 4 cut(s) | 283, 1488, 1802, 2631 |
| RsaNI | GTAC | 4 cut(s) | 282, 1487, 1801, 2630 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1724, 2151 |
| SacI | GAGCTC | 3 cut(s) | 163, 2100, 2415 |
| SapI | GCTCTTC | 1 cut(s) | 2403 |
| SaqAI | TTAA | 5 cut(s) | 146, 1278, 1826, 2013, 2183 |
| Sau96I | GGNCC | 6 cut(s) | 293, 1247, 1322, 1337, 1658, 2120 |
| ScaI | AGTACT | 1 cut(s) | 283 |
| SchI | GAGTC | 1 cut(s) | 1942 |
| SduI | GDGCHC | 5 cut(s) | 163, 386, 1214, 2100, 2415 |
| SfaNI | GCATC | 8 cut(s) | 239, 1037, 1423, 1589, 1966, 2198, 2245, 2284 |
| SfcI | CTRYAG | 1 cut(s) | 1236 |
| Sfr274I | CTCGAG | 1 cut(s) | 1266 |
| SinI | GGWCC | 3 cut(s) | 293, 1337, 1658 |
| SlaI | CTCGAG | 1 cut(s) | 1266 |
| SmaI | CCCGGG | 1 cut(s) | 381 |
| SmiI | ATTTAAAT | 1 cut(s) | 1827 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1724, 2151 |
| SmlI | CTYRAG | 4 cut(s) | 1266, 1647, 2040, 2638 |
| SmoI | CTYRAG | 4 cut(s) | 1266, 1647, 2040, 2638 |
| SphI | GCATGC | 2 cut(s) | 935, 1124 |
| SsiI | CCGC | 8 cut(s) | 645, 1841, 2170, 2387, 2425, 2491, 2543, 2572 |
| SspMI | CTAG | 4 cut(s) | 680, 1194, 2613, 2665 |
| SstI | GAGCTC | 3 cut(s) | 163, 2100, 2415 |
| StyI | CCWWGG | 3 cut(s) | 179, 792, 1764 |
| SwaI | ATTTAAAT | 1 cut(s) | 1827 |
| TaaI | ACNGT | 5 cut(s) | 641, 994, 1447, 1821, 1879 |
| TaiI | ACGT | 2 cut(s) | 622, 1624 |
| TaqI | TCGA | 6 cut(s) | 27, 942, 1022, 1221, 1267, 2476 |
| TatI | WGTACW | 2 cut(s) | 281, 1800 |
| TauI | GCSGC | 2 cut(s) | 2390, 2494 |
| TfiI | GAWTC | 9 cut(s) | 29, 488, 848, 944, 1019, 1070, 1180, 1302, 2538 |
| Tru1I | TTAA | 5 cut(s) | 146, 1278, 1826, 2013, 2183 |
| Tru9I | TTAA | 5 cut(s) | 146, 1278, 1826, 2013, 2183 |
| TscAI | CASTG | 3 cut(s) | 698, 704, 1134 |
| TseFI | GTSAC | 3 cut(s) | 426, 1364, 1421 |
| Tsp45I | GTSAC | 3 cut(s) | 426, 1364, 1421 |
| TspMI | CCCGGG | 1 cut(s) | 379 |
| TspRI | CASTG | 3 cut(s) | 698, 704, 1134 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 245 |
| VpaK11BI | GGWCC | 3 cut(s) | 293, 1337, 1658 |
| XapI | RAATTY | 2 cut(s) | 123, 2030 |
| XbaI | TCTAGA | 1 cut(s) | 1193 |
| XceI | RCATGY | 4 cut(s) | 935, 1124, 1145, 1476 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1544 |
| XhoI | CTCGAG | 1 cut(s) | 1266 |
| XmaI | CCCGGG | 1 cut(s) | 379 |
| XspI | CTAG | 4 cut(s) | 680, 1194, 2613, 2665 |
| ZrmI | AGTACT | 1 cut(s) | 283 |
| Zsp2I | ATGCAT | 4 cut(s) | 232, 1122, 2191, 2238 |