Rorug03G0222100

transport protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0005145
Physical Location & Seq
Forward (+)
20239778 .. 20240540
763 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0222100.1

Sequence Viewer

Length: 372 bp
ATGATGGGTCACTGCCTTCTCCTCCTCCTCCTCTCCCATTTCATCGCTGCTGACCAACTCTGGCTCTCCGGTGGCTGGGGTCCCATCCGAAATCTCAACAAACCCTATCTGAAAGAGATCGCGGAGTTTGCAGTTTCTGAAATCAGCAAACAATCCCACAAGAAGTTGGTATTCCAGAGCGTTCTCAAGGGTGAGAGTCAAGTGGTACGAGGATTCAATTATCTTCTTGACATTGAGGTCAAGGATGAGTCGTCGCCCCATTCCCCTAGTACTGTCATATATAAATGTTCTGTCTTCAGTGGTATCTTAGACGAGGGGATGAAATTCAAGGGTTGTGAGGTCCTTTCTGGTTGGGTGGATGTCAATTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Gelsolin Sec23_BS Sec23_helical Sec23_trunk zf-Sec23_Sec24

Protein Analysis

123

Amino Acids

13.78

Weight (kDa)

6.4

Isoelectric Point (pI)

42.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cystatin PF00031 24 - 97 2.2e-09 Cystatin domain
SQAPI PF16845 29 - 86 6e-17 Aspartic acid proteinase inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 236
AccII CGCG 1 cut(s) 122
AciI CCGC 1 cut(s) 122
AcsI RAATTY 1 cut(s) 323
AcuI CTGAAG 1 cut(s) 280
AfaI GTAC 2 cut(s) 207, 271
AfiI CCNNNNNNNGG 1 cut(s) 75
AgsI TTSAA 2 cut(s) 217, 328
AlwNI CAGNNNCTG 1 cut(s) 137
ApeKI GCWGC 1 cut(s) 47
ApoI RAATTY 1 cut(s) 323
AspS9I GGNCC 2 cut(s) 80, 340
AsuHPI GGTGA 1 cut(s) 203
AvaII GGWCC 2 cut(s) 80, 340
BbsI GAAGAC 1 cut(s) 286
BbvI GCAGC 1 cut(s) 34
BccI CCATC 1 cut(s) 92
BfaI CTAG 2 cut(s) 267, 370
BisI GCNGC 1 cut(s) 48
BlsI GCNGC 1 cut(s) 49
BmcAI AGTACT 1 cut(s) 271
Bme18I GGWCC 2 cut(s) 80, 340
BmgT120I GGNCC 2 cut(s) 80, 340
BmiI GGNNCC 2 cut(s) 81, 82
BpiI GAAGAC 1 cut(s) 286
BpuEI CTTGAG 1 cut(s) 170
BsaWI WCCGGW 1 cut(s) 68
Bsc4I CCNNNNNNNGG 1 cut(s) 75
BseGI GGATG 4 cut(s) 84, 250, 324, 364
BseLI CCNNNNNNNGG 1 cut(s) 75
BseRI GAGGAG 4 cut(s) 11, 14, 17, 20
BseXI GCAGC 1 cut(s) 34
BseYI CCCAGC 1 cut(s) 75
Bsh1236I CGCG 1 cut(s) 122
BsiSI CCGG 1 cut(s) 69
BslFI GGGAC 1 cut(s) 66
BslI CCNNNNNNNGG 1 cut(s) 75
BsmFI GGGAC 1 cut(s) 66
Bsp143I GATC 1 cut(s) 117
BspACI CCGC 1 cut(s) 122
BspFNI CGCG 1 cut(s) 122
BspLI GGNNCC 2 cut(s) 81, 82
BssMI GATC 1 cut(s) 117
Bst4CI ACNGT 1 cut(s) 274
BstDEI CTNAG 1 cut(s) 307
BstF5I GGATG 4 cut(s) 84, 250, 324, 364
BstFNI CGCG 1 cut(s) 122
BstKTI GATC 1 cut(s) 120
BstMBI GATC 1 cut(s) 117
BstMWI GCNNNNNNNGC 1 cut(s) 128
BstUI CGCG 1 cut(s) 122
BstV1I GCAGC 1 cut(s) 34
BstV2I GAAGAC 1 cut(s) 286
BtgZI GCGATG 1 cut(s) 28
BtsCI GGATG 4 cut(s) 84, 250, 324, 364
BtsI GCAGTG 1 cut(s) 10
BtsIMutI CAGTG 2 cut(s) 10, 304
CaiI CAGNNNCTG 1 cut(s) 137
Cfr13I GGNCC 2 cut(s) 80, 340
Csp6I GTAC 2 cut(s) 206, 270
CviJI RGCY 2 cut(s) 64, 75
CviKI_1 RGCY 2 cut(s) 64, 75
CviQI GTAC 2 cut(s) 206, 270
DdeI CTNAG 1 cut(s) 307
DpnI GATC 1 cut(s) 119
DpnII GATC 1 cut(s) 117
DrdI GACNNNNNNGTC 1 cut(s) 236
DseDI GACNNNNNNGTC 1 cut(s) 236
Eco47I GGWCC 2 cut(s) 80, 340
Eco57I CTGAAG 1 cut(s) 280
EcoO109I RGGNCCY 2 cut(s) 80, 340
FaiI YATR 3 cut(s) 278, 280, 282
FaqI GGGAC 1 cut(s) 66
Fnu4HI GCNGC 1 cut(s) 48
FokI GGATG 3 cut(s) 71, 257, 331
Fsp4HI GCNGC 1 cut(s) 48
FspBI CTAG 2 cut(s) 267, 370
GluI GCNGC 1 cut(s) 48
GsaI CCCAGC 1 cut(s) 79
HapII CCGG 1 cut(s) 69
HinfI GANTC 3 cut(s) 196, 213, 248
HpaII CCGG 1 cut(s) 69
HphI GGTGA 1 cut(s) 203
Hpy188I TCNGA 3 cut(s) 89, 111, 139
Hpy188III TCNNGA 2 cut(s) 175, 227
Hpy99I CGWCG 1 cut(s) 256
HpyAV CCTTC 1 cut(s) 26
HpyCH4III ACNGT 1 cut(s) 274
HpyCH4V TGCA 1 cut(s) 131
HpyF10VI GCNNNNNNNGC 1 cut(s) 128
HpyF3I CTNAG 1 cut(s) 307
KflI GGGWCCC 1 cut(s) 80
Kzo9I GATC 1 cut(s) 117
LpnPI CCDG 5 cut(s) 46, 61, 82, 188, 333
Lsp1109I GCAGC 1 cut(s) 34
MaeI CTAG 2 cut(s) 267, 370
MaeIII GTNAC 1 cut(s) 8
MalI GATC 1 cut(s) 119
MboI GATC 1 cut(s) 117
MboII GAAGA 2 cut(s) 215, 286
MluCI AATT 3 cut(s) 217, 323, 364
MlyI GAGTC 2 cut(s) 205, 257
MnlI CCTC 8 cut(s) 32, 35, 38, 41, 203, 229, 307, 331
MspI CCGG 1 cut(s) 69
MvnI CGCG 1 cut(s) 122
MwoI GCNNNNNNNGC 1 cut(s) 128
NdeII GATC 1 cut(s) 117
NlaIV GGNNCC 2 cut(s) 81, 82
NmuCI GTSAC 1 cut(s) 8
PfeI GAWTC 1 cut(s) 213
PkrI GCNGC 1 cut(s) 49
PleI GAGTC 2 cut(s) 204, 256
PpsI GAGTC 2 cut(s) 204, 256
PpuMI RGGWCCY 2 cut(s) 80, 340
Psp5II RGGWCCY 2 cut(s) 80, 340
PspFI CCCAGC 1 cut(s) 75
PspN4I GGNNCC 2 cut(s) 81, 82
PspPI GGNCC 2 cut(s) 80, 340
PspPPI RGGWCCY 2 cut(s) 80, 340
PstNI CAGNNNCTG 1 cut(s) 137
RsaI GTAC 2 cut(s) 207, 271
RsaNI GTAC 2 cut(s) 206, 270
SatI GCNGC 1 cut(s) 48
Sau3AI GATC 1 cut(s) 117
Sau96I GGNCC 2 cut(s) 80, 340
ScaI AGTACT 1 cut(s) 271
SchI GAGTC 2 cut(s) 205, 257
SetI ASST 2 cut(s) 240, 342
SinI GGWCC 2 cut(s) 80, 340
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
Sse9I AATT 3 cut(s) 217, 323, 364
SsiI CCGC 1 cut(s) 122
SspMI CTAG 2 cut(s) 267, 370
TaaI ACNGT 1 cut(s) 274
TasI AATT 3 cut(s) 217, 323, 364
TatI WGTACW 1 cut(s) 269
TfiI GAWTC 1 cut(s) 213
TscAI CASTG 2 cut(s) 17, 304
TseFI GTSAC 1 cut(s) 8
TseI GCWGC 1 cut(s) 47
Tsp45I GTSAC 1 cut(s) 8
TspDTI ATGAA 2 cut(s) 31, 335
TspRI CASTG 2 cut(s) 17, 304
VpaK11BI GGWCC 2 cut(s) 80, 340
XapI RAATTY 1 cut(s) 323
XspI CTAG 2 cut(s) 267, 370
ZrmI AGTACT 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.