Rorug03G0222200

transport protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0005145
Physical Location & Seq
Reverse (-)
20246227 .. 20246875
649 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0222200.1

Sequence Viewer

Length: 549 bp
ATGCACGAAGGTGCATGCTGGGCATTTACGACCGCAGCAACAGTGGAAGGGATTGCATACATAAAGAGAAATAGCTCAGTTCAACTATCCGTGCAGCAAATCGTTGATTGTGATAAGTGGTCTAACCTAGGCTGCAGAGGCGGTCTCGTAACGGATGCATTTGACTACGTAAAACGGAACGGAGGCCTCACCAGTGCCGACAATTACCCACATGATGCTAAGGATGGAATATGCAATCTCGATAAGGCAAAACAATTTAAAGCAAGTATTACTGGGTTTGCTCGCGTGTCGCCGAATGACGATAAAAACTGTGGAAATGGGGTGATAAACCACTCTATGACCATTGTTGGAATGGGGGAGACTGATGACAGCGTAAAGTACTGGAAACTGAAGAACTCATGGGGTCAGGATTGGGGCGAAGGAGGGTACATGAGAAAGATCAGAGGAACTGGCAAGCCAGAAGGTCATTGTTTCATGACTTCATCAATGCGAGAGCTTCTTATCCCAGAATTGATTGACGATGAGAATATGGGACACATTTTCCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Gelsolin Sec23_BS Sec23_helical Sec23_trunk zf-Sec23_Sec24

Protein Analysis

182

Amino Acids

20.09

Weight (kDa)

5.93

Isoelectric Point (pI)

21.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C1 PF00112 4 - 103 1.3e-25 Papain family cysteine protease
Peptidase_C1_2 PF03051 74 - 144 5.9e-08 Peptidase C1-like family
Peptidase_C1 PF00112 102 - 161 9.9e-13 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 285
AciI CCGC 2 cut(s) 33, 141
AcuI CTGAAG 1 cut(s) 410
AfaI GTAC 2 cut(s) 380, 428
AgsI TTSAA 1 cut(s) 83
AleI CACNNNNGTG 1 cut(s) 9
AluBI AGCT 2 cut(s) 75, 496
AluI AGCT 2 cut(s) 75, 496
Alw26I GTCTC 2 cut(s) 149, 353
AoxI GGCC 1 cut(s) 184
ApeKI GCWGC 3 cut(s) 35, 94, 132
AspA2I CCTAGG 1 cut(s) 127
AsuHPI GGTGA 2 cut(s) 181, 334
AvrII CCTAGG 1 cut(s) 127
BbvI GCAGC 3 cut(s) 47, 106, 119
BccI CCATC 1 cut(s) 218
BcoDI GTCTC 2 cut(s) 149, 353
BfaI CTAG 1 cut(s) 128
BfmI CTRYAG 1 cut(s) 133
BisI GCNGC 3 cut(s) 36, 95, 133
BlnI CCTAGG 1 cut(s) 127
BlsI GCNGC 3 cut(s) 37, 96, 134
BmcAI AGTACT 1 cut(s) 380
BmrI ACTGGG 1 cut(s) 282
BmsI GCATC 2 cut(s) 145, 205
BmuI ACTGGG 1 cut(s) 282
BplI GAGNNNNNCTC 2 cut(s) 129, 161
Bpu10I CCTNAGC 1 cut(s) 219
BsaAI YACGTR 1 cut(s) 169
BsaI GGTCTC 1 cut(s) 149
BsaJI CCNNGG 1 cut(s) 127
Bse1I ACTGG 4 cut(s) 192, 277, 386, 454
BseDI CCNNGG 1 cut(s) 127
BseGI GGATG 2 cut(s) 160, 229
BseMII CTCAG 1 cut(s) 90
BseNI ACTGG 4 cut(s) 192, 277, 386, 454
BseXI GCAGC 3 cut(s) 47, 106, 119
BseYI CCCAGC 1 cut(s) 18
BsgI GTGCAG 1 cut(s) 113
Bsh1236I CGCG 1 cut(s) 285
Bsh1285I CGRYCG 1 cut(s) 33
BshFI GGCC 1 cut(s) 186
BsiEI CGRYCG 1 cut(s) 33
BsmAI GTCTC 2 cut(s) 149, 353
BsnI GGCC 1 cut(s) 186
Bso31I GGTCTC 1 cut(s) 149
Bsp143I GATC 1 cut(s) 438
BspACI CCGC 2 cut(s) 33, 141
BspANI GGCC 1 cut(s) 186
BspCNI CTCAG 1 cut(s) 89
BspFNI CGCG 1 cut(s) 285
BspHI TCATGA 1 cut(s) 474
BspMAI CTGCAG 1 cut(s) 137
BspTNI GGTCTC 1 cut(s) 149
BsrI ACTGG 4 cut(s) 192, 277, 386, 454
BssECI CCNNGG 1 cut(s) 127
BssMI GATC 1 cut(s) 438
BssT1I CCWWGG 1 cut(s) 127
Bst4CI ACNGT 2 cut(s) 43, 311
BstBAI YACGTR 1 cut(s) 169
BstC8I GCNNGC 3 cut(s) 16, 283, 455
BstDEI CTNAG 2 cut(s) 76, 219
BstF5I GGATG 2 cut(s) 160, 229
BstFNI CGCG 1 cut(s) 285
BstKTI GATC 1 cut(s) 441
BstMAI GTCTC 2 cut(s) 149, 353
BstMBI GATC 1 cut(s) 438
BstMCI CGRYCG 1 cut(s) 33
BstMWI GCNNNNNNNGC 2 cut(s) 20, 138
BstNSI RCATGY 1 cut(s) 18
BstSFI CTRYAG 1 cut(s) 133
BstSNI TACGTA 1 cut(s) 169
BstUI CGCG 1 cut(s) 285
BstV1I GCAGC 3 cut(s) 47, 106, 119
BsuRI GGCC 1 cut(s) 186
BtsCI GGATG 2 cut(s) 160, 229
BtsIMutI CAGTG 2 cut(s) 48, 199
Cac8I GCNNGC 3 cut(s) 16, 283, 455
CciI TCATGA 1 cut(s) 474
Csp6I GTAC 2 cut(s) 379, 427
CviAII CATG 5 cut(s) 15, 212, 399, 430, 475
CviJI RGCY 5 cut(s) 75, 132, 186, 457, 496
CviKI_1 RGCY 5 cut(s) 75, 132, 186, 457, 496
CviQI GTAC 2 cut(s) 379, 427
DdeI CTNAG 2 cut(s) 76, 219
DpnI GATC 1 cut(s) 440
DpnII GATC 1 cut(s) 438
DraI TTTAAA 1 cut(s) 259
Eco105I TACGTA 1 cut(s) 169
Eco130I CCWWGG 1 cut(s) 127
Eco147I AGGCCT 1 cut(s) 186
Eco31I GGTCTC 1 cut(s) 149
Eco57I CTGAAG 1 cut(s) 410
EcoT14I CCWWGG 1 cut(s) 127
EcoT22I ATGCAT 1 cut(s) 160
ErhI CCWWGG 1 cut(s) 127
FaeI CATG 5 cut(s) 18, 215, 402, 433, 478
FatI CATG 5 cut(s) 14, 211, 398, 429, 474
Fnu4HI GCNGC 3 cut(s) 36, 95, 133
FokI GGATG 2 cut(s) 167, 236
Fsp4HI GCNGC 3 cut(s) 36, 95, 133
FspBI CTAG 1 cut(s) 128
GluI GCNGC 3 cut(s) 36, 95, 133
GsaI CCCAGC 1 cut(s) 22
HaeIII GGCC 1 cut(s) 186
Hin1II CATG 5 cut(s) 18, 215, 402, 433, 478
HphI GGTGA 2 cut(s) 181, 334
Hpy188I TCNGA 1 cut(s) 443
Hpy188III TCNNGA 3 cut(s) 239, 407, 475
HpyAV CCTTC 3 cut(s) 41, 413, 455
HpyCH4III ACNGT 2 cut(s) 43, 311
HpyCH4IV ACGT 1 cut(s) 168
HpyCH4V TGCA 7 cut(s) 4, 14, 56, 94, 135, 158, 234
HpyF10VI GCNNNNNNNGC 2 cut(s) 20, 138
HpyF3I CTNAG 2 cut(s) 76, 219
HpySE526I ACGT 1 cut(s) 168
Hsp92II CATG 5 cut(s) 18, 215, 402, 433, 478
Kzo9I GATC 1 cut(s) 438
LpnPI CCDG 8 cut(s) 4, 205, 258, 367, 392, 435, 471, 519
Lsp1109I GCAGC 3 cut(s) 47, 106, 119
LweI GCATC 2 cut(s) 145, 205
MaeI CTAG 1 cut(s) 128
MaeII ACGT 1 cut(s) 168
MaeIII GTNAC 1 cut(s) 148
MalI GATC 1 cut(s) 440
MboI GATC 1 cut(s) 438
MboII GAAGA 1 cut(s) 403
MluCI AATT 3 cut(s) 202, 254, 509
MmeI TCCRAC 1 cut(s) 328
MnlI CCTC 5 cut(s) 131, 176, 197, 416, 437
Mph1103I ATGCAT 1 cut(s) 160
MseI TTAA 1 cut(s) 258
MslI CAYNNNNRTG 1 cut(s) 9
MvnI CGCG 1 cut(s) 285
MwoI GCNNNNNNNGC 2 cut(s) 20, 138
NdeII GATC 1 cut(s) 438
NlaIII CATG 5 cut(s) 18, 215, 402, 433, 478
NsiI ATGCAT 1 cut(s) 160
NspI RCATGY 1 cut(s) 18
OliI CACNNNNGTG 1 cut(s) 9
PaeI GCATGC 1 cut(s) 18
PagI TCATGA 1 cut(s) 474
PceI AGGCCT 1 cut(s) 186
PkrI GCNGC 3 cut(s) 37, 96, 134
Ppu21I YACGTR 1 cut(s) 169
PspFI CCCAGC 1 cut(s) 18
PstI CTGCAG 1 cut(s) 137
RsaI GTAC 2 cut(s) 380, 428
RsaNI GTAC 2 cut(s) 379, 427
RseI CAYNNNNRTG 1 cut(s) 9
SaqAI TTAA 1 cut(s) 258
SatI GCNGC 3 cut(s) 36, 95, 133
Sau3AI GATC 1 cut(s) 438
ScaI AGTACT 1 cut(s) 380
SetI ASST 6 cut(s) 13, 77, 129, 171, 466, 498
SfaNI GCATC 2 cut(s) 145, 205
SfcI CTRYAG 1 cut(s) 133
SmiMI CAYNNNNRTG 1 cut(s) 9
SnaBI TACGTA 1 cut(s) 169
SphI GCATGC 1 cut(s) 18
Sse9I AATT 3 cut(s) 202, 254, 509
SseBI AGGCCT 1 cut(s) 186
SsiI CCGC 2 cut(s) 33, 141
SspMI CTAG 1 cut(s) 128
StuI AGGCCT 1 cut(s) 186
StyI CCWWGG 1 cut(s) 127
TaaI ACNGT 2 cut(s) 43, 311
TaiI ACGT 1 cut(s) 171
TaqI TCGA 1 cut(s) 240
TasI AATT 3 cut(s) 202, 254, 509
TatI WGTACW 1 cut(s) 378
Tru1I TTAA 1 cut(s) 258
Tru9I TTAA 1 cut(s) 258
TscAI CASTG 2 cut(s) 48, 199
TseI GCWGC 3 cut(s) 35, 94, 132
TspDTI ATGAA 2 cut(s) 463, 471
TspGWI ACGGA 4 cut(s) 79, 167, 190, 195
TspRI CASTG 2 cut(s) 48, 199
XceI RCATGY 1 cut(s) 18
XcmI CCANNNNNNNNNTGG 1 cut(s) 349
XmaJI CCTAGG 1 cut(s) 127
XspI CTAG 1 cut(s) 128
ZrmI AGTACT 1 cut(s) 380
Zsp2I ATGCAT 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.