Rorug03G0222000

transport protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0005145
Physical Location & Seq
Reverse (-)
20234710 .. 20236214
1505 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0222000.1

Sequence Viewer

Length: 1107 bp
ATGTCTAACGCGCAAGAACACCCCAAGAAGGCATTTGGATGGGCTGCAAGAGATTCATATGGTGTTCTCTCTCCCTTCAGTTTCTCCAGAAGATTTGATTGCAGGGAAACCGGAGAGAAAGACGTGACATTCAAAGTGTTGTACTGTGGGATTTTCCATTCGGACCTTCACATGGTCAAAAATGAATGGGGCTTCTCTACCTATCCTCTGGTTCCCGGGCATGAGATTGTCAGTGAAGTGACGGAAGTAGGGAGCAATGTACAAAAATTCAAAGTTGGAGACAAAGTCGGTGTTGGATGCATGGTGGGAGCTTGCCGATCTTGTGATAGTTGTACCGACCACCTTGAGAACTACTGCCCCAAACAAATACTCACGTATGGTATGAAGTACTACGATGGAACCACCACCTATGGCGGTTACTCTGACATTACGGTGGCCGATGAGGACTTCGTAGTCCGTATCCCGAACAACCTACCCCTTGATTGTGCTGCTCCCCTCCTATGTGCCGGAATCACAACCTACAACCCGTTGAGATATTTTGGACTTGACAAGCCCGGCATGCATGTGGGTGTGGTTGGCCTAGGCGGTTTAGGCCACGTTGCGGTGAAGTTTGCCAAGGCAATGGGAGTGAAGGTTACAGTGATCAGTACGTCCCCTAATAAGAAGGAGGAAGCTGTTAAACACCTAGGTGCTGATTCGTTTTTGGTTAGTCGTGACCAAGATCAAATGCAGGTAATTATTCGAACAAGCTGCCATGGTACCATGGATGGGATCATTGACACAGTTTCTGCACAACATCCTCTCTTGCCTTTGATTGGTTTGTTGAAGTCTCATGGAAAGCTTGTTATGGTTGGTGCACCAGAAAAGCCTCTTGAGCTTCTGGTTTTTCCTTTACTCATGGGAAGGAAGATGGTAGCTGGTAGCGGCATTGGAGGTATGAAGGAGACACAAGAGATGATCGATTTTGCAGCTAAGCACAACATAACAACAGACATCGAGGTTATCCCAATTGACTACTTGAACACTGCCATGGAGCGCCTTGCCAAAGCAGACGTCAGATACCGTTTTGTCATTGACATTGGAAACACACTAAAGGCTAGCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Gelsolin Sec23_BS Sec23_helical Sec23_trunk zf-Sec23_Sec24

Protein Analysis

368

Amino Acids

40.2

Weight (kDa)

6.63

Isoelectric Point (pI)

30.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 38 - 155 1.9e-24 Alcohol dehydrogenase GroES-like domain
2-Hacid_dh_C PF02826 178 - 229 8.9e-06 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
ADH_zinc_N PF00107 196 - 324 1.1e-22 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 452
AatII GACGTC 1 cut(s) 1056
Acc36I ACCTGC 1 cut(s) 721
Acc65I GGTACC 1 cut(s) 758
AccB1I GGYRCC 1 cut(s) 758
AccII CGCG 1 cut(s) 11
AciI CCGC 4 cut(s) 414, 585, 602, 924
AclWI GGATC 1 cut(s) 779
AcoI YGGCCR 1 cut(s) 435
AcsI RAATTY 1 cut(s) 266
AcuI CTGAAG 1 cut(s) 61
AcyI GRCGYC 1 cut(s) 1053
AfaI GTAC 6 cut(s) 143, 261, 334, 389, 649, 760
AfiI CCNNNNNNNGG 5 cut(s) 28, 172, 601, 768, 815
AgsI TTSAA 4 cut(s) 133, 271, 826, 1021
AjiI CACGTC 1 cut(s) 124
AleI CACNNNNGTG 1 cut(s) 687
AluBI AGCT 8 cut(s) 311, 674, 750, 841, 877, 917, 971, 1101
AluI AGCT 8 cut(s) 311, 674, 750, 841, 877, 917, 971, 1101
Alw21I GWGCWC 1 cut(s) 859
Alw26I GTCTC 3 cut(s) 273, 834, 938
Alw44I GTGCAC 1 cut(s) 855
AlwI GGATC 1 cut(s) 779
AlwNI CAGNNNCTG 1 cut(s) 788
Ama87I CYCGRG 1 cut(s) 215
AoxI GGCC 3 cut(s) 435, 577, 592
ApaLI GTGCAC 1 cut(s) 855
ApeKI GCWGC 4 cut(s) 44, 488, 750, 968
ApoI RAATTY 1 cut(s) 266
ArsI GACNNNNNNTTYG 2 cut(s) 1038, 1070
Asp718I GGTACC 1 cut(s) 758
AspA2I CCTAGG 2 cut(s) 580, 685
AspLEI GCGC 2 cut(s) 13, 1038
AspS9I GGNCC 1 cut(s) 163
AsuC2I CCSGG 3 cut(s) 216, 217, 555
AsuHPI GGTGA 1 cut(s) 616
AsuII TTCGAA 1 cut(s) 742
AsuNHI GCTAGC 1 cut(s) 1097
AvaI CYCGRG 1 cut(s) 215
AvaII GGWCC 1 cut(s) 163
AvrII CCTAGG 2 cut(s) 580, 685
BaeGI GKGCMC 1 cut(s) 859
BanI GGYRCC 1 cut(s) 758
Bbv12I GWGCWC 1 cut(s) 859
BbvI GCAGC 4 cut(s) 31, 475, 737, 980
BccI CCATC 4 cut(s) 33, 389, 761, 904
BcgI CGANNNNNNTGC 2 cut(s) 732, 766
BciVI GTATCC 1 cut(s) 470
BclI TGATCA 1 cut(s) 642
BcnI CCSGG 3 cut(s) 216, 217, 555
BcoDI GTCTC 3 cut(s) 273, 834, 938
BfaI CTAG 3 cut(s) 581, 686, 1098
BfoI RGCGCY 1 cut(s) 1039
BfuAI ACCTGC 1 cut(s) 721
BfuI GTATCC 1 cut(s) 470
BisI GCNGC 5 cut(s) 45, 489, 751, 925, 969
BlnI CCTAGG 2 cut(s) 580, 685
BlpI GCTNAGC 1 cut(s) 972
BlsI GCNGC 5 cut(s) 46, 490, 752, 926, 970
BmcAI AGTACT 1 cut(s) 389
Bme1390I CCNGG 3 cut(s) 216, 217, 555
Bme18I GGWCC 1 cut(s) 163
BmeT110I CYCGRG 1 cut(s) 215
BmgBI CACGTC 1 cut(s) 124
BmgT120I GGNCC 1 cut(s) 163
BmiI GGNNCC 3 cut(s) 213, 400, 760
BmrFI CCNGG 3 cut(s) 216, 217, 555
BmsI GCATC 1 cut(s) 287
BmtI GCTAGC 1 cut(s) 1101
BpmI CTGGAG 1 cut(s) 70
Bpu1102I GCTNAGC 1 cut(s) 972
Bpu14I TTCGAA 1 cut(s) 742
BpuEI CTTGAG 2 cut(s) 365, 893
BpuMI CCSGG 3 cut(s) 216, 217, 555
Bsa29I ATCGAT 1 cut(s) 960
BsaAI YACGTR 1 cut(s) 375
BsaHI GRCGYC 1 cut(s) 1053
BsaJI CCNNGG 7 cut(s) 215, 580, 615, 685, 754, 762, 1029
BsaWI WCCGGW 1 cut(s) 110
BsaXI ACNNNNNCTCC 4 cut(s) 270, 300, 618, 648
Bsc4I CCNNNNNNNGG 5 cut(s) 28, 172, 601, 768, 815
Bse3DI GCAATG 2 cut(s) 262, 627
BseCI ATCGAT 1 cut(s) 960
BseDI CCNNGG 7 cut(s) 215, 580, 615, 685, 754, 762, 1029
BseGI GGATG 4 cut(s) 44, 302, 772, 796
BseLI CCNNNNNNNGG 5 cut(s) 28, 172, 601, 768, 815
BseMI GCAATG 2 cut(s) 262, 627
BseSI GKGCMC 1 cut(s) 859
BseXI GCAGC 4 cut(s) 31, 475, 737, 980
BsgI GTGCAG 1 cut(s) 774
Bsh1236I CGCG 1 cut(s) 11
BshFI GGCC 3 cut(s) 437, 579, 594
BshNI GGYRCC 1 cut(s) 758
BshVI ATCGAT 1 cut(s) 960
BsiHKAI GWGCWC 1 cut(s) 859
BsiHKCI CYCGRG 1 cut(s) 215
BsiSI CCGG 4 cut(s) 111, 216, 507, 555
BslFI GGGAC 1 cut(s) 637
BslI CCNNNNNNNGG 5 cut(s) 28, 172, 601, 768, 815
BsmAI GTCTC 3 cut(s) 273, 834, 938
BsmFI GGGAC 1 cut(s) 637
BsnI GGCC 3 cut(s) 437, 579, 594
BsoBI CYCGRG 1 cut(s) 215
Bsp119I TTCGAA 1 cut(s) 742
Bsp1286I GDGCHC 1 cut(s) 859
Bsp1407I TGTACA 1 cut(s) 259
Bsp143I GATC 5 cut(s) 317, 642, 721, 771, 957
Bsp1720I GCTNAGC 1 cut(s) 972
Bsp19I CCATGG 3 cut(s) 754, 762, 1029
BspACI CCGC 4 cut(s) 414, 585, 602, 924
BspANI GGCC 3 cut(s) 437, 579, 594
BspDI ATCGAT 1 cut(s) 960
BspFNI CGCG 1 cut(s) 11
BspLI GGNNCC 3 cut(s) 213, 400, 760
BspMI ACCTGC 1 cut(s) 721
BspOI GCTAGC 1 cut(s) 1101
BspPI GGATC 1 cut(s) 779
BspT104I TTCGAA 1 cut(s) 742
BspT107I GGYRCC 1 cut(s) 758
BsrDI GCAATG 2 cut(s) 262, 627
BsrGI TGTACA 1 cut(s) 259
BssECI CCNNGG 7 cut(s) 215, 580, 615, 685, 754, 762, 1029
BssMI GATC 5 cut(s) 317, 642, 721, 771, 957
BssNI GRCGYC 1 cut(s) 1053
BssT1I CCWWGG 6 cut(s) 580, 615, 685, 754, 762, 1029
Bst4CI ACNGT 5 cut(s) 146, 433, 640, 784, 1064
BstACI GRCGYC 1 cut(s) 1053
BstAUI TGTACA 1 cut(s) 259
BstBAI YACGTR 1 cut(s) 375
BstBI TTCGAA 1 cut(s) 742
BstC8I GCNNGC 3 cut(s) 313, 560, 1099
BstDEI CTNAG 1 cut(s) 972
BstDSI CCRYGG 3 cut(s) 754, 762, 1029
BstF5I GGATG 4 cut(s) 44, 302, 772, 796
BstFNI CGCG 1 cut(s) 11
BstH2I RGCGCY 1 cut(s) 1039
BstHHI GCGC 2 cut(s) 13, 1038
BstKTI GATC 5 cut(s) 320, 645, 724, 774, 960
BstMAI GTCTC 3 cut(s) 273, 834, 938
BstMBI GATC 5 cut(s) 317, 642, 721, 771, 957
BstMWI GCNNNNNNNGC 3 cut(s) 559, 591, 874
BstNSI RCATGY 2 cut(s) 562, 566
BstSCI CCNGG 3 cut(s) 214, 215, 553
BstSLI GKGCMC 1 cut(s) 859
BstUI CGCG 1 cut(s) 11
BstV1I GCAGC 4 cut(s) 31, 475, 737, 980
BstXI CCANNNNNNTGG 1 cut(s) 622
Bsu15I ATCGAT 1 cut(s) 960
BsuI GTATCC 1 cut(s) 470
BsuRI GGCC 3 cut(s) 437, 579, 594
BsuTUI ATCGAT 1 cut(s) 960
BtgI CCRYGG 3 cut(s) 754, 762, 1029
BtrI CACGTC 1 cut(s) 124
BtsCI GGATG 4 cut(s) 44, 302, 772, 796
BtsI GCAGTG 1 cut(s) 1023
BtsIMutI CAGTG 3 cut(s) 238, 645, 1023
BveI ACCTGC 1 cut(s) 721
Cac8I GCNNGC 3 cut(s) 313, 560, 1099
CaiI CAGNNNCTG 1 cut(s) 788
CfoI GCGC 2 cut(s) 13, 1038
Cfr13I GGNCC 1 cut(s) 163
Cfr9I CCCGGG 1 cut(s) 215
ClaI ATCGAT 1 cut(s) 960
Csp6I GTAC 6 cut(s) 142, 260, 333, 388, 648, 759
CviQI GTAC 6 cut(s) 142, 260, 333, 388, 648, 759
DdeI CTNAG 1 cut(s) 972
DpnI GATC 5 cut(s) 319, 644, 723, 773, 959
DpnII GATC 5 cut(s) 317, 642, 721, 771, 957
DrdI GACNNNNNNGTC 1 cut(s) 452
DseDI GACNNNNNNGTC 1 cut(s) 452
EaeI YGGCCR 1 cut(s) 435
Eco130I CCWWGG 6 cut(s) 580, 615, 685, 754, 762, 1029
Eco47I GGWCC 1 cut(s) 163
Eco57I CTGAAG 1 cut(s) 61
Eco88I CYCGRG 1 cut(s) 215
EcoT14I CCWWGG 6 cut(s) 580, 615, 685, 754, 762, 1029
EcoT22I ATGCAT 2 cut(s) 302, 564
ErhI CCWWGG 6 cut(s) 580, 615, 685, 754, 762, 1029
FaqI GGGAC 1 cut(s) 637
FauNDI CATATG 1 cut(s) 58
FbaI TGATCA 1 cut(s) 642
Fnu4HI GCNGC 5 cut(s) 45, 489, 751, 925, 969
FokI GGATG 4 cut(s) 51, 309, 779, 783
Fsp4HI GCNGC 5 cut(s) 45, 489, 751, 925, 969
FspBI CTAG 3 cut(s) 581, 686, 1098
GlaI GCGC 2 cut(s) 12, 1037
GluI GCNGC 5 cut(s) 45, 489, 751, 925, 969
GsuI CTGGAG 1 cut(s) 70
HaeII RGCGCY 1 cut(s) 1039
HaeIII GGCC 3 cut(s) 437, 579, 594
HapII CCGG 4 cut(s) 111, 216, 507, 555
HhaI GCGC 2 cut(s) 13, 1038
Hin1I GRCGYC 1 cut(s) 1053
Hin6I GCGC 2 cut(s) 11, 1036
HinP1I GCGC 2 cut(s) 11, 1036
HindIII AAGCTT 1 cut(s) 839
HinfI GANTC 3 cut(s) 53, 510, 695
HpaII CCGG 4 cut(s) 111, 216, 507, 555
HphI GGTGA 1 cut(s) 616
Hpy166II GTNNAC 1 cut(s) 857
Hpy188I TCNGA 3 cut(s) 163, 424, 1058
Hpy188III TCNNGA 4 cut(s) 87, 463, 713, 872
Hpy8I GTNNAC 1 cut(s) 857
HpyAV CCTTC 7 cut(s) 22, 85, 176, 625, 658, 897, 934
HpyCH4III ACNGT 5 cut(s) 146, 433, 640, 784, 1064
HpyCH4IV ACGT 5 cut(s) 123, 374, 597, 650, 1053
HpyCH4V TGCA 8 cut(s) 47, 102, 300, 562, 730, 791, 857, 968
HpyF10VI GCNNNNNNNGC 3 cut(s) 559, 591, 874
HpyF3I CTNAG 1 cut(s) 972
HpySE526I ACGT 5 cut(s) 123, 374, 597, 650, 1053
Hsp92I GRCGYC 1 cut(s) 1053
HspAI GCGC 2 cut(s) 11, 1036
KpnI GGTACC 1 cut(s) 762
Ksp22I TGATCA 1 cut(s) 642
Kzo9I GATC 5 cut(s) 317, 642, 721, 771, 957
LmnI GCTCC 4 cut(s) 252, 308, 496, 1033
Lsp1109I GCAGC 4 cut(s) 31, 475, 737, 980
LweI GCATC 1 cut(s) 287
MaeI CTAG 3 cut(s) 581, 686, 1098
MaeII ACGT 5 cut(s) 123, 374, 597, 650, 1053
MaeIII GTNAC 5 cut(s) 124, 238, 416, 634, 713
MalI GATC 5 cut(s) 319, 644, 723, 773, 959
MboI GATC 5 cut(s) 317, 642, 721, 771, 957
MboII GAAGA 2 cut(s) 102, 919
MfeI CAATTG 1 cut(s) 1008
MhlI GDGCHC 1 cut(s) 859
MluCI AATT 3 cut(s) 266, 735, 1008
MmeI TCCRAC 2 cut(s) 256, 274
MnlI CCTC 8 cut(s) 216, 436, 506, 661, 810, 879, 926, 991
Mph1103I ATGCAT 2 cut(s) 302, 564
MseI TTAA 2 cut(s) 678, 1105
MslI CAYNNNNRTG 6 cut(s) 37, 431, 563, 567, 687, 1028
MspI CCGG 4 cut(s) 111, 216, 507, 555
MspR9I CCNGG 3 cut(s) 216, 217, 555
MunI CAATTG 1 cut(s) 1008
MvnI CGCG 1 cut(s) 11
MwoI GCNNNNNNNGC 3 cut(s) 559, 591, 874
NciI CCSGG 3 cut(s) 216, 217, 555
NcoI CCATGG 3 cut(s) 754, 762, 1029
NdeI CATATG 1 cut(s) 58
NdeII GATC 5 cut(s) 317, 642, 721, 771, 957
NheI GCTAGC 1 cut(s) 1097
NlaIV GGNNCC 3 cut(s) 213, 400, 760
NmuCI GTSAC 3 cut(s) 124, 238, 713
NsiI ATGCAT 2 cut(s) 302, 564
NspI RCATGY 2 cut(s) 562, 566
NspV TTCGAA 1 cut(s) 742
OliI CACNNNNGTG 1 cut(s) 687
PaeI GCATGC 1 cut(s) 562
PfeI GAWTC 3 cut(s) 53, 510, 695
PflFI GACNNNGTC 1 cut(s) 284
PkrI GCNGC 5 cut(s) 46, 490, 752, 926, 970
Ppu21I YACGTR 1 cut(s) 375
PspN4I GGNNCC 3 cut(s) 213, 400, 760
PspPI GGNCC 1 cut(s) 163
PstNI CAGNNNCTG 1 cut(s) 788
PsyI GACNNNGTC 1 cut(s) 284
RsaI GTAC 6 cut(s) 143, 261, 334, 389, 649, 760
RsaNI GTAC 6 cut(s) 142, 260, 333, 388, 648, 759
RseI CAYNNNNRTG 6 cut(s) 37, 431, 563, 567, 687, 1028
SaqAI TTAA 2 cut(s) 678, 1105
SatI GCNGC 5 cut(s) 45, 489, 751, 925, 969
Sau3AI GATC 5 cut(s) 317, 642, 721, 771, 957
Sau96I GGNCC 1 cut(s) 163
ScaI AGTACT 1 cut(s) 389
ScrFI CCNGG 3 cut(s) 216, 217, 555
SduI GDGCHC 1 cut(s) 859
SfaNI GCATC 1 cut(s) 287
SfuI TTCGAA 1 cut(s) 742
SinI GGWCC 1 cut(s) 163
SmaI CCCGGG 1 cut(s) 217
SmiMI CAYNNNNRTG 6 cut(s) 37, 431, 563, 567, 687, 1028
SmlI CTYRAG 2 cut(s) 344, 872
SmoI CTYRAG 2 cut(s) 344, 872
SphI GCATGC 1 cut(s) 562
Sse9I AATT 3 cut(s) 266, 735, 1008
SsiI CCGC 4 cut(s) 414, 585, 602, 924
SspMI CTAG 3 cut(s) 581, 686, 1098
StyD4I CCNGG 3 cut(s) 214, 215, 553
StyI CCWWGG 6 cut(s) 580, 615, 685, 754, 762, 1029
TaaI ACNGT 5 cut(s) 146, 433, 640, 784, 1064
TaiI ACGT 5 cut(s) 126, 377, 600, 653, 1056
TaqI TCGA 3 cut(s) 742, 960, 996
TasI AATT 3 cut(s) 266, 735, 1008
TatI WGTACW 3 cut(s) 141, 259, 387
TauI GCSGC 1 cut(s) 927
TfiI GAWTC 3 cut(s) 53, 510, 695
Tru1I TTAA 2 cut(s) 678, 1105
Tru9I TTAA 2 cut(s) 678, 1105
TscAI CASTG 3 cut(s) 238, 645, 1030
TseFI GTSAC 3 cut(s) 124, 238, 713
TseI GCWGC 4 cut(s) 44, 488, 750, 968
Tsp45I GTSAC 3 cut(s) 124, 238, 713
TspDTI ATGAA 4 cut(s) 45, 198, 398, 953
TspGWI ACGGA 2 cut(s) 257, 446
TspMI CCCGGG 1 cut(s) 215
TspRI CASTG 3 cut(s) 238, 645, 1030
Tth111I GACNNNGTC 1 cut(s) 284
VneI GTGCAC 1 cut(s) 855
VpaK11BI GGWCC 1 cut(s) 163
XapI RAATTY 1 cut(s) 266
XceI RCATGY 2 cut(s) 562, 566
XmaI CCCGGG 1 cut(s) 215
XmaJI CCTAGG 2 cut(s) 580, 685
XspI CTAG 3 cut(s) 581, 686, 1098
ZraI GACGTC 1 cut(s) 1054
ZrmI AGTACT 1 cut(s) 389
Zsp2I ATGCAT 2 cut(s) 302, 564
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.