Rroxscaffold_6G00396210

transport protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0005145
Physical Location & Seq
Forward (+)
17536158 .. 17541683
5526 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00396210.1

Sequence Viewer

Length: 2652 bp
ATGTCGAATCCACCACCGCAACCTTCCCTTGGATACTCGATCAGTTTCAGTAGTCCCTCACAGTCAGACACACCATCACCTGACCCTGCTAAAAATGCCATTCCTCCTCCTCCTCCACCTTCGGTTTCGCCCGGACAGTCCAGATTCCCTCCTCCACCAAAGTTTCAGCTCGATCAATTTCCTTCTCCCTCAGTCAAAACCCCGAACGGGCCGTCACCGGCTAGCGGTGGTGGATTGAAAACCGGCAGCCCCATTCCTCATTTGAGTACTCCCCCCGGACCTCCCGTCTTTACTTCCCCTGTCCGTCCCGCTGCTGTGCCTTTTCGTGCTTCGCCTGTTACTCCTCAGCCGGTTGCTTTCTCTCCGGCCGCATCCTTGCCAACATCTTCGCCTCTCAATTTTTCGAATGGATCACTTGAATTGGACCACCAACTGTCCAATGTCACAGACGATGATGCAGTTTCGGTTGGTGAACCACCGTATGTCTTATTCTCAGCTCATAAGGTGTTGAAACAGAAGAAACAAGCAAATGTCCCAAGTTTGGGTTTTGGGGCACTGGTTTCCCCTGGGAGGGAAATTTCTCCGGGTCCTCAAATAATACAACGTGATCCTCATCGCTGCCATAGTTGTGGAGCTTATGCAAATATCTACTGCAACATTTTGCTGGGCTCAGGACAGTGGCAGTGTGTAATCTGCCGAGAATTGAATGGTAGTGAGGGGGAATATATAGCTCCTAGCAAGGAAGATCTTGCCAACTTTCCAGAGTTGTCATCTCCCATGGTTGATTATGTTCAAACTGCGAACAATAGACCTGGTTTTGTTCCAGTTTCTGATTCTAGAATGTCTGCACCCCTTGTTCTTGTTATAGACGAGTGTTTAGATGAACCACATCTCTGGCATTTACAGAGCTCCTTACATGCCTTTGTCGATTCACTTCCCCCTACAACGAGAATTGGAATAGTACTATATGGTCGCACAGTATCAGTTTATGATTTTTCAGAGGAATCAGTTGCATCTGCTGATGTGCTTCCAGGCGACAAATCACCATGCCAGGAGTCCTTGAAGGCATTGATATATGGAACTGGTATATATTTGTCTCCAATGCATGCTTCACTGCCTGTAGCACATGCCATATTCTCATCATTAAGGCCGTATAAATTGAACATTCCAGAAGCTTCTAGAGACCGGTGCCTTGGCACAGCAGTTGAGGTTGCTCTTGCTATAATTCAAGGCCCATCAGCAGACATTTCTCGAGGGGTAATAAAAAGGTCAGGAGGTAATAGCAGAGTCATAGTTTGTGCTGGTGGACCCAATACTTATGGTCCTGGATCTGTTCCTCATTCTTTCAGTCACCCAAATTATGCTCACTTGGAAAAGACTGCATTGAAATGGATGGAGCATCTGGGTCAAGAGGCACACCGACACAATACAGTAGTTGATATTCTTTGCGCTGGGCAATGCCCTGTAAGGGTTCCTGTTTTGCAGCCTCTTGCAAAAGCTTCTGGGGGCGTTTTTGTTCTCCATGATGACTTTGGTGAAGCCTTTGGAGTGAACTTGCAAAGAGCATCCACCAGGGCAGCAGGTTCCCGTGGGTTCTTGGCAATTCGCTGTTCAGATGATATTCTCATAACCCAAGTTGTGGGTCCTGGTGAAGAGGCACATGTAGACACTCATGAAACGTTCAAAAATGATACATCTCTTTACATACAAATGCCAAGTGTTGAAGAAACACAGAGCTTCTCACTCTCCTTGGAAAATAAGAGGGACATTAGGACTGAGTATGTGTATTTCCAGTTTACAACTCAGTTTCTGAATGTTTATCAAGCTGATATATCAAGAGTAATAACTGTTAGATTGCCAACAGTTGATAGTGTTTCAGCATATCTTGAGAGTGTTCAAGAGGAAGTGGCAGCAGTTCTTATTGCAAAGAGGACTCTCTTGCGAGCCAAAAACAGTTCTGATGCAATTGATATGCAATCAACAATAGATGAAAGAATTAAAGACATTGCTTTAAAATATGGTTCTCAAGTACCAAAATCAAAGCAATATCGTTTCCCAAAGGAGATGTCTTTATTACCAGAGCACCTGTTTCATCTTAGAAGGGGCCCACTTTTGGGAAACATTGTTGGCCATGAAGATGAGAGGTCTGTGTTACGGAACTTGTTTCTGAATGCATCCTTTGATCTGTCTCTGCGAATGGTTGCACCTCGTTGTCTAATGCATCGGGAAGGGGGAACTTTCGAGGAACTACCAGCTTATGACCTTGCTATGCAGTCTGATGCAGCAGTTGTACTTGATCATGGCACAGATGTCTTCATTTGGTTGGGTGCTGAACTTGCTGCTGATGAAGGGAAAAGTGCAGCTGCTTTAGCTGCGTGCAGAACATTGGCTGAAGAGCTCAGTGAACTTCGGTTTCCAGCCCCTCGGATTCTTTCCTTCAAGGAAGGAAGTTCTCAGGCTCGGTATTTTGTATCGCGGCTCATTCCTGCACACAAGGATCCTCCTTATGAGCAGGAGGCAAGATTTCCTCAGCTACGAACTTTGACAATAGAACAGCGCACAAAGCTGAAAAGCAGTTTTATTAGTTTTGATGACCCTAGCTTCTGTGAGTGGGTACGAAGCTTGAGAGTGGTTCCCCCAGAACCAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Gelsolin Sec23_BS Sec23_helical Sec23_trunk zf-Sec23_Sec24

Protein Analysis

883

Amino Acids

96.0

Weight (kDa)

6.05

Isoelectric Point (pI)

59.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-Sec23_Sec24 PF04810 204 - 242 1.9e-10 Sec23/Sec24 zinc finger
Sec23_trunk PF04811 286 - 512 2.2e-12 Sec23/Sec24 trunk domain
Sec23_BS PF08033 531 - 621 1.9e-12 Sec23/Sec24 beta-sandwich domain
Sec23_helical PF04815 635 - 731 2.3e-15 Sec23/Sec24 helical domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1571
AccB1I GGYRCC 1 cut(s) 1188
AccB7I CCANNNNNTGG 1 cut(s) 1639
AccI GTMKAC 1 cut(s) 1665
AccII CGCG 1 cut(s) 2476
AciI CCGC 5 cut(s) 17, 225, 309, 369, 2476
AclI AACGTT 1 cut(s) 1679
AclWI GGATC 5 cut(s) 418, 602, 1336, 2492, 2505
AcoI YGGCCR 2 cut(s) 366, 2128
AcsI RAATTY 1 cut(s) 576
AcuI CTGAAG 1 cut(s) 2412
AfaI GTAC 5 cut(s) 268, 963, 2031, 2292, 2616
AflIII ACRYGT 1 cut(s) 1660
AgeI ACCGGT 1 cut(s) 1185
AhdI GACNNNNNGTC 1 cut(s) 284
AjnI CCWGG 7 cut(s) 565, 811, 1030, 1050, 1324, 1571, 1645
AjuI GAANNNNNNNTTGG 2 cut(s) 1093, 1125
Alw21I GWGCWC 3 cut(s) 911, 2085, 2400
Alw26I GTCTC 3 cut(s) 1101, 1176, 2193
AlwI GGATC 5 cut(s) 418, 602, 1336, 2492, 2505
AlwNI CAGNNNCTG 2 cut(s) 830, 1810
Ama87I CYCGRG 1 cut(s) 1251
AoxI GGCC 6 cut(s) 209, 366, 1148, 1231, 2104, 2128
ApaI GGGCCC 1 cut(s) 2108
ApoI RAATTY 1 cut(s) 576
ArsI GACNNNNNNTTYG 4 cut(s) 197, 229, 2051, 2083
AsiGI ACCGGT 1 cut(s) 1185
AspLEI GCGC 2 cut(s) 1451, 2559
AsuC2I CCSGG 3 cut(s) 132, 276, 585
AsuHPI GGTGA 7 cut(s) 69, 207, 482, 1035, 1343, 1547, 1661
AsuII TTCGAA 1 cut(s) 404
AsuNHI GCTAGC 1 cut(s) 221
AvaI CYCGRG 1 cut(s) 1251
AvaII GGWCC 6 cut(s) 278, 424, 587, 1307, 1322, 1643
BaeGI GKGCMC 2 cut(s) 556, 2108
BalI TGGCCA 1 cut(s) 2130
BamHI GGATCC 1 cut(s) 2497
BanI GGYRCC 1 cut(s) 1188
BanII GRGCYC 4 cut(s) 671, 911, 2108, 2400
BbsI GAAGAC 1 cut(s) 2305
Bbv12I GWGCWC 3 cut(s) 911, 2085, 2400
BbvCI CCTCAGC 2 cut(s) 345, 2529
BccI CCATC 3 cut(s) 82, 1243, 1387
BceAI ACGGC 2 cut(s) 196, 1135
BciT130I CCWGG 7 cut(s) 567, 813, 1032, 1052, 1326, 1573, 1647
BciVI GTATCC 1 cut(s) 26
BclI TGATCA 1 cut(s) 2296
BcnI CCSGG 3 cut(s) 132, 276, 585
BcoDI GTCTC 3 cut(s) 1101, 1176, 2193
BfaI CTAG 6 cut(s) 222, 735, 837, 1179, 2598, 2650
BfmI CTRYAG 1 cut(s) 1119
BfuAI ACCTGC 1 cut(s) 1571
BfuI GTATCC 1 cut(s) 26
BglII AGATCT 1 cut(s) 745
BmcAI AGTACT 2 cut(s) 268, 963
Bme18I GGWCC 6 cut(s) 278, 424, 587, 1307, 1322, 1643
BmeRI GACNNNNNGTC 1 cut(s) 284
BmeT110I CYCGRG 1 cut(s) 1251
BmsI GCATC 9 cut(s) 380, 445, 1022, 1408, 1574, 1951, 2183, 2230, 2269
BmtI GCTAGC 1 cut(s) 225
BpiI GAAGAC 1 cut(s) 2305
Bpu10I CCTNAGC 3 cut(s) 345, 670, 2529
Bpu14I TTCGAA 1 cut(s) 404
BpuEI CTTGAG 3 cut(s) 1907, 2010, 2644
BpuMI CCSGG 3 cut(s) 132, 276, 585
BsaBI GATNNNNATC 1 cut(s) 612
BsaI GGTCTC 1 cut(s) 1176
BsaWI WCCGGW 1 cut(s) 1185
Bse118I RCCGGY 4 cut(s) 217, 242, 349, 1185
Bse1I ACTGG 4 cut(s) 561, 824, 1087, 1792
Bse3DI GCAATG 2 cut(s) 1463, 2004
Bse8I GATNNNNATC 1 cut(s) 612
BseBI CCWGG 7 cut(s) 567, 813, 1032, 1052, 1326, 1573, 1647
BseGI GGATG 4 cut(s) 371, 1398, 1565, 2174
BseJI GATNNNNATC 1 cut(s) 612
BseMI GCAATG 2 cut(s) 1463, 2004
BseMII CTCAG 9 cut(s) 204, 359, 507, 684, 1767, 1817, 2413, 2468, 2543
BseNI ACTGG 4 cut(s) 561, 824, 1087, 1792
BseRI GAGGAG 5 cut(s) 96, 99, 102, 141, 333
BseSI GKGCMC 2 cut(s) 556, 2108
BseX3I CGGCCG 1 cut(s) 366
BseYI CCCAGC 2 cut(s) 664, 1451
BsgI GTGCAG 4 cut(s) 831, 2379, 2398, 2472
Bsh1236I CGCG 1 cut(s) 2476
Bsh1285I CGRYCG 1 cut(s) 369
BshFI GGCC 6 cut(s) 211, 368, 1150, 1233, 2106, 2130
BshNI GGYRCC 1 cut(s) 1188
BshTI ACCGGT 1 cut(s) 1185
BsiEI CGRYCG 1 cut(s) 369
BsiHKAI GWGCWC 3 cut(s) 911, 2085, 2400
BsiHKCI CYCGRG 1 cut(s) 1251
BsiSI CCGG 8 cut(s) 132, 218, 243, 276, 350, 365, 584, 1186
BslFI GGGAC 4 cut(s) 39, 291, 518, 1778
BsmAI GTCTC 3 cut(s) 1101, 1176, 2193
BsmFI GGGAC 4 cut(s) 39, 291, 518, 1778
BsmI GAATGC 1 cut(s) 2176
BsnI GGCC 6 cut(s) 211, 368, 1150, 1233, 2106, 2130
Bso31I GGTCTC 1 cut(s) 1176
BsoBI CYCGRG 1 cut(s) 1251
Bsp119I TTCGAA 1 cut(s) 404
Bsp120I GGGCCC 1 cut(s) 2104
Bsp1286I GDGCHC 6 cut(s) 556, 671, 911, 2085, 2108, 2400
Bsp143I GATC 9 cut(s) 39, 172, 410, 607, 745, 1328, 2182, 2296, 2497
Bsp19I CCATGG 1 cut(s) 777
BspACI CCGC 5 cut(s) 17, 225, 309, 369, 2476
BspANI GGCC 6 cut(s) 211, 368, 1150, 1233, 2106, 2130
BspCNI CTCAG 9 cut(s) 203, 358, 506, 683, 1768, 1816, 2412, 2467, 2542
BspFNI CGCG 1 cut(s) 2476
BspHI TCATGA 1 cut(s) 1672
BspMI ACCTGC 1 cut(s) 1571
BspOI GCTAGC 1 cut(s) 225
BspPI GGATC 5 cut(s) 418, 602, 1336, 2492, 2505
BspQI GCTCTTC 1 cut(s) 2388
BspT104I TTCGAA 1 cut(s) 404
BspT107I GGYRCC 1 cut(s) 1188
BspTNI GGTCTC 1 cut(s) 1176
BsrDI GCAATG 2 cut(s) 1463, 2004
BsrFI RCCGGY 4 cut(s) 217, 242, 349, 1185
BsrI ACTGG 4 cut(s) 561, 824, 1087, 1792
BssAI RCCGGY 4 cut(s) 217, 242, 349, 1185
BssMI GATC 9 cut(s) 39, 172, 410, 607, 745, 1328, 2182, 2296, 2497
BssT1I CCWWGG 4 cut(s) 28, 777, 1192, 1749
Bst2UI CCWGG 7 cut(s) 567, 813, 1032, 1052, 1326, 1573, 1647
Bst6I CTCTTC 2 cut(s) 1647, 2388
BstBI TTCGAA 1 cut(s) 404
BstC8I GCNNGC 4 cut(s) 223, 1107, 1944, 2377
BstDSI CCRYGG 2 cut(s) 777, 1588
BstF5I GGATG 4 cut(s) 371, 1398, 1565, 2174
BstFNI CGCG 1 cut(s) 2476
BstHHI GCGC 2 cut(s) 1451, 2559
BstKTI GATC 9 cut(s) 42, 175, 413, 610, 748, 1331, 2185, 2299, 2500
BstMAI GTCTC 3 cut(s) 1101, 1176, 2193
BstMBI GATC 9 cut(s) 39, 172, 410, 607, 745, 1328, 2182, 2296, 2497
BstMCI CGRYCG 1 cut(s) 369
BstMWI GCNNNNNNNGC 5 cut(s) 95, 2336, 2369, 2372, 2563
BstNI CCWGG 7 cut(s) 567, 813, 1032, 1052, 1326, 1573, 1647
BstNSI RCATGY 4 cut(s) 920, 1109, 1130, 1664
BstSFI CTRYAG 1 cut(s) 1119
BstSLI GKGCMC 2 cut(s) 556, 2108
BstUI CGCG 1 cut(s) 2476
BstV2I GAAGAC 1 cut(s) 2305
BstX2I RGATCY 3 cut(s) 745, 1328, 2497
BstXI CCANNNNNNTGG 2 cut(s) 629, 894
BstYI RGATCY 3 cut(s) 745, 1328, 2497
BstZI CGGCCG 1 cut(s) 366
BsuI GTATCC 1 cut(s) 26
BsuRI GGCC 6 cut(s) 211, 368, 1150, 1233, 2106, 2130
BtgI CCRYGG 2 cut(s) 777, 1588
BtgZI GCGATG 1 cut(s) 599
BtsCI GGATG 4 cut(s) 371, 1398, 1565, 2174
BtsI GCAGTG 2 cut(s) 689, 1112
BtsIMutI CAGTG 5 cut(s) 554, 683, 689, 1112, 2407
BveI ACCTGC 1 cut(s) 1571
Cac8I GCNNGC 4 cut(s) 223, 1107, 1944, 2377
CaiI CAGNNNCTG 2 cut(s) 830, 1810
CciI TCATGA 1 cut(s) 1672
CfoI GCGC 2 cut(s) 1451, 2559
Cfr10I RCCGGY 4 cut(s) 217, 242, 349, 1185
CsiI ACCWGGT 1 cut(s) 811
Csp6I GTAC 5 cut(s) 267, 962, 2030, 2291, 2615
CspAI ACCGGT 1 cut(s) 1185
CviQI GTAC 5 cut(s) 267, 962, 2030, 2291, 2615
DpnI GATC 9 cut(s) 41, 174, 412, 609, 747, 1330, 2184, 2298, 2499
DpnII GATC 9 cut(s) 39, 172, 410, 607, 745, 1328, 2182, 2296, 2497
DraI TTTAAA 1 cut(s) 2013
DriI GACNNNNNGTC 1 cut(s) 284
EaeI YGGCCR 2 cut(s) 366, 2128
EagI CGGCCG 1 cut(s) 366
Eam1104I CTCTTC 2 cut(s) 1647, 2388
Eam1105I GACNNNNNGTC 1 cut(s) 284
EarI CTCTTC 2 cut(s) 1647, 2388
Ecl136II GAGCTC 2 cut(s) 909, 2398
EclXI CGGCCG 1 cut(s) 366
Eco130I CCWWGG 4 cut(s) 28, 777, 1192, 1749
Eco24I GRGCYC 4 cut(s) 671, 911, 2108, 2400
Eco31I GGTCTC 1 cut(s) 1176
Eco47I GGWCC 6 cut(s) 278, 424, 587, 1307, 1322, 1643
Eco52I CGGCCG 1 cut(s) 366
Eco53kI GAGCTC 2 cut(s) 909, 2398
Eco57I CTGAAG 1 cut(s) 2412
Eco88I CYCGRG 1 cut(s) 1251
EcoICRI GAGCTC 2 cut(s) 909, 2398
EcoO109I RGGNCCY 3 cut(s) 587, 1643, 2104
EcoRII CCWGG 7 cut(s) 565, 811, 1030, 1050, 1324, 1571, 1645
EcoT14I CCWWGG 4 cut(s) 28, 777, 1192, 1749
EcoT22I ATGCAT 3 cut(s) 1107, 2176, 2223
EcoT38I GRGCYC 4 cut(s) 671, 911, 2108, 2400
ErhI CCWWGG 4 cut(s) 28, 777, 1192, 1749
FaqI GGGAC 4 cut(s) 39, 291, 518, 1778
FauI CCCGC 1 cut(s) 316
FbaI TGATCA 1 cut(s) 2296
FblI GTMKAC 1 cut(s) 1665
FokI GGATG 4 cut(s) 358, 1405, 1552, 2161
FriOI GRGCYC 4 cut(s) 671, 911, 2108, 2400
FspBI CTAG 6 cut(s) 222, 735, 837, 1179, 2598, 2650
GlaI GCGC 2 cut(s) 1450, 2558
GsaI CCCAGC 2 cut(s) 668, 1455
HaeIII GGCC 6 cut(s) 211, 368, 1150, 1233, 2106, 2130
HapII CCGG 8 cut(s) 132, 218, 243, 276, 350, 365, 584, 1186
HhaI GCGC 2 cut(s) 1451, 2559
Hin6I GCGC 2 cut(s) 1449, 2557
HinP1I GCGC 2 cut(s) 1449, 2557
HindIII AAGCTT 3 cut(s) 1173, 1497, 2620
HinfI GANTC 9 cut(s) 7, 144, 833, 929, 1004, 1055, 1287, 1933, 2428
HpaII CCGG 8 cut(s) 132, 218, 243, 276, 350, 365, 584, 1186
HphI GGTGA 7 cut(s) 69, 207, 482, 1035, 1343, 1547, 1661
Hpy166II GTNNAC 6 cut(s) 473, 1307, 1552, 1666, 1797, 2405
Hpy188I TCNGA 9 cut(s) 67, 832, 1000, 1615, 1812, 1960, 2169, 2278, 2427
Hpy8I GTNNAC 6 cut(s) 473, 1307, 1552, 1666, 1797, 2405
HpyAV CCTTC 9 cut(s) 33, 129, 192, 1057, 2094, 2222, 2342, 2438, 2446
HpyCH4IV ACGT 2 cut(s) 604, 1679
HpyF10VI GCNNNNNNNGC 5 cut(s) 95, 2336, 2369, 2372, 2563
HpySE526I ACGT 2 cut(s) 604, 1679
HspAI GCGC 2 cut(s) 1449, 2557
Ksp22I TGATCA 1 cut(s) 2296
Kzo9I GATC 9 cut(s) 39, 172, 410, 607, 745, 1328, 2182, 2296, 2497
LguI GCTCTTC 1 cut(s) 2388
LmnI GCTCC 4 cut(s) 632, 736, 914, 1396
LweI GCATC 9 cut(s) 380, 445, 1022, 1408, 1574, 1951, 2183, 2230, 2269
MabI ACCWGGT 1 cut(s) 811
MaeI CTAG 6 cut(s) 222, 735, 837, 1179, 2598, 2650
MaeII ACGT 2 cut(s) 604, 1679
MaeIII GTNAC 5 cut(s) 213, 337, 442, 1349, 2151
MalI GATC 9 cut(s) 41, 174, 412, 609, 747, 1330, 2184, 2298, 2499
MboI GATC 9 cut(s) 39, 172, 410, 607, 745, 1328, 2182, 2296, 2497
MboII GAAGA 8 cut(s) 378, 529, 755, 1664, 1736, 2147, 2305, 2405
MfeI CAATTG 1 cut(s) 1965
MflI RGATCY 3 cut(s) 745, 1328, 2497
MhlI GDGCHC 6 cut(s) 556, 671, 911, 2085, 2108, 2400
MlsI TGGCCA 1 cut(s) 2130
MluNI TGGCCA 1 cut(s) 2130
MlyI GAGTC 3 cut(s) 1064, 1296, 1927
Mox20I TGGCCA 1 cut(s) 2130
Mph1103I ATGCAT 3 cut(s) 1107, 2176, 2223
MscI TGGCCA 1 cut(s) 2130
MseI TTAA 3 cut(s) 1145, 1998, 2012
MslI CAYNNNNRTG 4 cut(s) 627, 1387, 1709, 2136
Msp20I TGGCCA 1 cut(s) 2130
MspA1I CMGCKG 2 cut(s) 311, 2363
MspI CCGG 8 cut(s) 132, 218, 243, 276, 350, 365, 584, 1186
MunI CAATTG 1 cut(s) 1965
Mva1269I GAATGC 1 cut(s) 2176
MvaI CCWGG 7 cut(s) 567, 813, 1032, 1052, 1326, 1573, 1647
MvnI CGCG 1 cut(s) 2476
MwoI GCNNNNNNNGC 5 cut(s) 95, 2336, 2369, 2372, 2563
NciI CCSGG 3 cut(s) 132, 276, 585
NcoI CCATGG 1 cut(s) 777
NdeII GATC 9 cut(s) 39, 172, 410, 607, 745, 1328, 2182, 2296, 2497
NheI GCTAGC 1 cut(s) 221
NmeAIII GCCGAG 1 cut(s) 722
NmuCI GTSAC 3 cut(s) 213, 442, 1349
NsiI ATGCAT 3 cut(s) 1107, 2176, 2223
NspI RCATGY 4 cut(s) 920, 1109, 1130, 1664
NspV TTCGAA 1 cut(s) 404
PaeI GCATGC 1 cut(s) 1109
PaeR7I CTCGAG 1 cut(s) 1251
PagI TCATGA 1 cut(s) 1672
PasI CCCWGGG 1 cut(s) 566
PciI ACATGT 1 cut(s) 1660
PciSI GCTCTTC 1 cut(s) 2388
PctI GAATGC 1 cut(s) 2176
PfeI GAWTC 6 cut(s) 7, 144, 833, 929, 1004, 2428
PflMI CCANNNNNTGG 1 cut(s) 1639
PfoI TCCNGGA 1 cut(s) 1324
PinAI ACCGGT 1 cut(s) 1185
PleI GAGTC 3 cut(s) 1063, 1295, 1927
PpsI GAGTC 3 cut(s) 1063, 1295, 1927
PpuMI RGGWCCY 2 cut(s) 587, 1643
PscI ACATGT 1 cut(s) 1660
Psp124BI GAGCTC 2 cut(s) 911, 2400
Psp1406I AACGTT 1 cut(s) 1679
Psp5II RGGWCCY 2 cut(s) 587, 1643
Psp6I CCWGG 7 cut(s) 565, 811, 1030, 1050, 1324, 1571, 1645
PspFI CCCAGC 2 cut(s) 664, 1451
PspGI CCWGG 7 cut(s) 565, 811, 1030, 1050, 1324, 1571, 1645
PspOMI GGGCCC 1 cut(s) 2104
PspPPI RGGWCCY 2 cut(s) 587, 1643
PstNI CAGNNNCTG 2 cut(s) 830, 1810
PsuI RGATCY 3 cut(s) 745, 1328, 2497
PvuII CAGCTG 1 cut(s) 2363
RsaI GTAC 5 cut(s) 268, 963, 2031, 2292, 2616
RsaNI GTAC 5 cut(s) 267, 962, 2030, 2291, 2615
RseI CAYNNNNRTG 4 cut(s) 627, 1387, 1709, 2136
SacI GAGCTC 2 cut(s) 911, 2400
SapI GCTCTTC 1 cut(s) 2388
SaqAI TTAA 3 cut(s) 1145, 1998, 2012
Sau3AI GATC 9 cut(s) 39, 172, 410, 607, 745, 1328, 2182, 2296, 2497
ScaI AGTACT 2 cut(s) 268, 963
SchI GAGTC 3 cut(s) 1064, 1296, 1927
SduI GDGCHC 6 cut(s) 556, 671, 911, 2085, 2108, 2400
SexAI ACCWGGT 1 cut(s) 811
SfaNI GCATC 9 cut(s) 380, 445, 1022, 1408, 1574, 1951, 2183, 2230, 2269
SfcI CTRYAG 1 cut(s) 1119
Sfr274I CTCGAG 1 cut(s) 1251
SfuI TTCGAA 1 cut(s) 404
SinI GGWCC 6 cut(s) 278, 424, 587, 1307, 1322, 1643
SlaI CTCGAG 1 cut(s) 1251
SmiMI CAYNNNNRTG 4 cut(s) 627, 1387, 1709, 2136
SmlI CTYRAG 4 cut(s) 1251, 1886, 2025, 2623
SmoI CTYRAG 4 cut(s) 1251, 1886, 2025, 2623
SphI GCATGC 1 cut(s) 1109
SsiI CCGC 5 cut(s) 17, 225, 309, 369, 2476
SspMI CTAG 6 cut(s) 222, 735, 837, 1179, 2598, 2650
SstI GAGCTC 2 cut(s) 911, 2400
StyI CCWWGG 4 cut(s) 28, 777, 1192, 1749
TaiI ACGT 2 cut(s) 607, 1682
TaqI TCGA 7 cut(s) 5, 38, 171, 404, 927, 1252, 2241
TatI WGTACW 3 cut(s) 266, 961, 2290
TauI GCSGC 2 cut(s) 371, 2479
TfiI GAWTC 6 cut(s) 7, 144, 833, 929, 1004, 2428
Tru1I TTAA 3 cut(s) 1145, 1998, 2012
Tru9I TTAA 3 cut(s) 1145, 1998, 2012
TscAI CASTG 5 cut(s) 561, 683, 689, 1119, 2407
TseFI GTSAC 3 cut(s) 213, 442, 1349
Tsp45I GTSAC 3 cut(s) 213, 442, 1349
TspDTI ATGAA 7 cut(s) 897, 1689, 2004, 2081, 2148, 2305, 2361
TspGWI ACGGA 2 cut(s) 293, 2170
TspRI CASTG 5 cut(s) 561, 683, 689, 1119, 2407
Van91I CCANNNNNTGG 1 cut(s) 1639
VpaK11BI GGWCC 6 cut(s) 278, 424, 587, 1307, 1322, 1643
XapI RAATTY 1 cut(s) 576
XbaI TCTAGA 2 cut(s) 836, 1178
XceI RCATGY 4 cut(s) 920, 1109, 1130, 1664
XcmI CCANNNNNNNNNTGG 1 cut(s) 1529
XhoI CTCGAG 1 cut(s) 1251
XmiI GTMKAC 1 cut(s) 1665
XspI CTAG 6 cut(s) 222, 735, 837, 1179, 2598, 2650
ZrmI AGTACT 2 cut(s) 268, 963
Zsp2I ATGCAT 3 cut(s) 1107, 2176, 2223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.