Prupe.3G005000_v2.0.a1

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Reverse (-)
305332 .. 312641
7310 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G005000.1

Sequence Viewer

Length: 1596 bp
ATGGTTGTGCTCGCTTCTTCAATTATAAGCAAGTCTGGGAAAGTGCTTGTTTCTAGGCAGTTTGTGGATATGTCTCGTATAAGAATTGAGGGTCTTCTTGCGGCTTTCCCTAAGTTGGTAGGCACCGGCAAACAACATACATATGTTGAGACAGAAAATGTGCGCTATGTTTACCAGCCGATAGAATCTTTGTACTTGCTACTTGTTACAAACAAGCAGAGCAATATATTGGAAGATTTGGAGACTTTGCGGCTGCTCTCTAAACTTGTACCTGAATATTCTTTGTCCCTAGATGAAGAAGGTATATGCAGGACAGCATTCGAGCTGATTTTTGCTTTTGATGAAGTCATCTCTCTTGGGCACAAGGAAAATGTGACTGTTGCACAGGTTAAGCAGTACTGTGAGATGGAGAGTCATGAAGAGAAGTTGCACAAGCTCGTAATGCAGAGCAAGATAAACGAAACCAAGGATGTTATGAAACGGAAAGCTAGTGAGATTGACAAAAGCAAGATTGATAGGGGCAGAGTTGAAAAGGGTGGATTTATGTCTTTACAGTCAATGGGATCTGGAAGAATTGAAAGTGCCTTTAGTGATATGAGCATATCTAGTAGTGGAAGTGGTGGTTTCGGAGGTGGTTCTGGTTTTGGATTGAGCACTGATATTGACTCATTTTCTACGAAGACCAAAGGTCGTCCACCTTCATCTGCCACCGCTCCTCCAAAGGGTTTAGGTATGCAGCTGGGAAAATCACAAAGGACCAACCAATTTTTAGAGTCCCTGAAAGCAGAGGGGGAGGTGATTCTTGAAGATGTACAGCCAAAAGCAGGCCAGTCTAAATCAGCTGCTCCACCTCTAACTGATCCCGTCACTTTGAATGTTGAAGAGAAGCTCAATGTTACACTTAAACGTGATGGTGGAATGAGCAACTTTGATGTTCAGGGGACATTATCTCTGCAAATTCTTAACCAAGAAGATGCACTTATCCAAGTCCAGATTGAAACTGGTGCAAATCCTGGCATCCTTTTCAAAACACACCCTAACATGAACAAAGAACTGTTCTCCAATGAAAATATTCTAGGCCTAAGGGATCCTTCTAGGCCTTTTCCCACCGGTCAAGCTGGTGATGCAGGAGGTGTTGGTCTTTTGAAATGGAGAATGCAGACTACAGACGAGTCAATGGTGCCCCTGACAATTAACTGTTGGCCCTCTGTTTCTGGGAATGAAACTTATGTCAACATTGAATACGAAGCTTCACAGATGTTTGATCTGCGAAATGTTGTCATCTCAGTACCTCTGCCAGCTCTTCGAGAGGCTCCACGAGTAAGCCAGGTTGATGGTGAATGGAGATATGATTCAAGGAATTCAACGTTGGAGTGGTCCATACTTCTTGTTGATAACTCAAACCGCAGTGGATCGATGGAATTTGTTGTTCCCCCAGCAGACTCATCTGTATTTTTCCCTATTTCTGTGCGCTTCTCCGCCACTAGTACATTCAGTGACCTGAAGGTTGTGAACATTTTACCTCTGCAAGGTGGAAACCCTCCCAAGTTCTCTCAAAGAACGCAGTTGATCACAGAGAATTACCAAGTGGTGTGA

Protein Analysis

532

Amino Acids

58.39

Weight (kDa)

5.48

Isoelectric Point (pI)

50.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 26
AccB1I GGYRCC 2 cut(s) 122, 1180
AccBSI CCGCTC 1 cut(s) 713
AciI CCGC 5 cut(s) 101, 250, 711, 1405, 1479
AclI AACGTT 1 cut(s) 1367
AclWI GGATC 5 cut(s) 571, 854, 1082, 1095, 1420
AcsI RAATTY 3 cut(s) 957, 1360, 1421
AcuI CTGAAG 1 cut(s) 1523
AfaI GTAC 6 cut(s) 194, 270, 398, 813, 1290, 1489
AfiI CCNNNNNNNGG 4 cut(s) 115, 722, 824, 1529
AgeI ACCGGT 1 cut(s) 1109
AhdI GACNNNNNGTC 1 cut(s) 687
AhlI ACTAGT 1 cut(s) 1484
AjnI CCWGG 2 cut(s) 1012, 1326
AjuI GAANNNNNNNTTGG 2 cut(s) 1352, 1384
AluBI AGCT 9 cut(s) 325, 436, 488, 739, 842, 889, 1118, 1250, 1301
AluI AGCT 9 cut(s) 325, 436, 488, 739, 842, 889, 1118, 1250, 1301
Alw21I GWGCWC 2 cut(s) 12, 656
Alw26I GTCTC 3 cut(s) 78, 143, 236
AlwI GGATC 5 cut(s) 571, 854, 1082, 1095, 1420
AoxI GGCC 4 cut(s) 826, 1078, 1097, 1202
ApeKI GCWGC 3 cut(s) 253, 736, 842
ApoI RAATTY 3 cut(s) 957, 1360, 1421
AsiGI ACCGGT 1 cut(s) 1109
Asp700I GAANNNNTTC 1 cut(s) 1071
AspLEI GCGC 2 cut(s) 165, 1473
AspS9I GGNCC 3 cut(s) 756, 1203, 1377
AsuHPI GGTGA 3 cut(s) 808, 1133, 1349
AvaII GGWCC 2 cut(s) 756, 1377
AxyI CCTNAGG 1 cut(s) 1082
BaeGI GKGCMC 2 cut(s) 363, 1185
BamHI GGATCC 1 cut(s) 1087
BanI GGYRCC 2 cut(s) 122, 1180
BauI CACGAG 1 cut(s) 1317
BbsI GAAGAC 2 cut(s) 86, 686
Bbv12I GWGCWC 2 cut(s) 12, 656
BbvI GCAGC 3 cut(s) 240, 748, 829
BccI CCATC 4 cut(s) 400, 905, 1328, 1411
BciT130I CCWGG 2 cut(s) 1014, 1328
BclI TGATCA 1 cut(s) 1569
BcoDI GTCTC 3 cut(s) 78, 143, 236
BcuI ACTAGT 1 cut(s) 1484
BfaI CTAG 7 cut(s) 54, 290, 489, 606, 1076, 1095, 1485
BfmI CTRYAG 1 cut(s) 1164
BisI GCNGC 5 cut(s) 102, 251, 254, 737, 843
BlsI GCNGC 5 cut(s) 103, 252, 255, 738, 844
BmcAI AGTACT 1 cut(s) 398
Bme1390I CCNGG 2 cut(s) 1014, 1328
Bme18I GGWCC 2 cut(s) 756, 1377
BmeRI GACNNNNNGTC 1 cut(s) 687
BmgT120I GGNCC 3 cut(s) 756, 1203, 1377
BmiI GGNNCC 4 cut(s) 124, 1089, 1182, 1314
BmrFI CCNGG 2 cut(s) 1014, 1328
BmsI GCATC 3 cut(s) 964, 1026, 1114
BpiI GAAGAC 2 cut(s) 86, 686
Bsa29I ATCGAT 1 cut(s) 1415
BsaJI CCNNGG 1 cut(s) 465
BsaWI WCCGGW 1 cut(s) 1109
BsaXI ACNNNNNCTCC 2 cut(s) 700, 730
Bsc4I CCNNNNNNNGG 4 cut(s) 115, 722, 824, 1529
Bse118I RCCGGY 2 cut(s) 125, 1109
Bse1I ACTGG 2 cut(s) 829, 1006
Bse21I CCTNAGG 1 cut(s) 1082
BseBI CCWGG 2 cut(s) 1014, 1328
BseCI ATCGAT 1 cut(s) 1415
BseDI CCNNGG 1 cut(s) 465
BseGI GGATG 2 cut(s) 475, 1017
BseLI CCNNNNNNNGG 4 cut(s) 115, 722, 824, 1529
BseMII CTCAG 1 cut(s) 1299
BseNI ACTGG 2 cut(s) 829, 1006
BseRI GAGGAG 1 cut(s) 705
BseSI GKGCMC 2 cut(s) 363, 1185
BseXI GCAGC 3 cut(s) 240, 748, 829
BseYI CCCAGC 2 cut(s) 739, 1435
BshFI GGCC 4 cut(s) 828, 1080, 1099, 1204
BshNI GGYRCC 2 cut(s) 122, 1180
BshTI ACCGGT 1 cut(s) 1109
BshVI ATCGAT 1 cut(s) 1415
BsiHKAI GWGCWC 2 cut(s) 12, 656
BsiSI CCGG 2 cut(s) 126, 1110
BslFI GGGAC 3 cut(s) 271, 760, 955
BslI CCNNNNNNNGG 4 cut(s) 115, 722, 824, 1529
BsmAI GTCTC 3 cut(s) 78, 143, 236
BsmFI GGGAC 3 cut(s) 271, 760, 955
BsmI GAATGC 2 cut(s) 317, 1161
BsnI GGCC 4 cut(s) 828, 1080, 1099, 1204
Bsp1286I GDGCHC 4 cut(s) 12, 363, 656, 1185
Bsp1407I TGTACA 1 cut(s) 811
Bsp143I GATC 6 cut(s) 563, 859, 1087, 1264, 1412, 1569
BspACI CCGC 5 cut(s) 101, 250, 711, 1405, 1479
BspANI GGCC 4 cut(s) 828, 1080, 1099, 1204
BspCNI CTCAG 1 cut(s) 1298
BspDI ATCGAT 1 cut(s) 1415
BspHI TCATGA 1 cut(s) 415
BspLI GGNNCC 4 cut(s) 124, 1089, 1182, 1314
BspPI GGATC 5 cut(s) 571, 854, 1082, 1095, 1420
BspQI GCTCTTC 1 cut(s) 1308
BspT107I GGYRCC 2 cut(s) 122, 1180
BsrBI CCGCTC 1 cut(s) 713
BsrFI RCCGGY 2 cut(s) 125, 1109
BsrGI TGTACA 1 cut(s) 811
BsrI ACTGG 2 cut(s) 829, 1006
BssAI RCCGGY 2 cut(s) 125, 1109
BssECI CCNNGG 1 cut(s) 465
BssMI GATC 6 cut(s) 563, 859, 1087, 1264, 1412, 1569
BssSI CACGAG 1 cut(s) 1317
BssT1I CCWWGG 1 cut(s) 465
Bst2BI CACGAG 1 cut(s) 1317
Bst2UI CCWGG 2 cut(s) 1014, 1328
Bst4CI ACNGT 5 cut(s) 379, 401, 555, 1056, 1199
Bst6I CTCTTC 3 cut(s) 414, 876, 1308
BstAUI TGTACA 1 cut(s) 811
BstC8I GCNNGC 3 cut(s) 12, 826, 1299
BstDEI CTNAG 3 cut(s) 111, 1082, 1285
BstENI CCTNNNNNAGG 1 cut(s) 1527
BstF5I GGATG 2 cut(s) 475, 1017
BstHHI GCGC 2 cut(s) 165, 1473
BstKTI GATC 6 cut(s) 566, 862, 1090, 1267, 1415, 1572
BstMAI GTCTC 3 cut(s) 78, 143, 236
BstMBI GATC 6 cut(s) 563, 859, 1087, 1264, 1412, 1569
BstMWI GCNNNNNNNGC 2 cut(s) 442, 1124
BstNI CCWGG 2 cut(s) 1014, 1328
BstSCI CCNGG 2 cut(s) 1012, 1326
BstSFI CTRYAG 1 cut(s) 1164
BstSLI GKGCMC 2 cut(s) 363, 1185
BstV1I GCAGC 3 cut(s) 240, 748, 829
BstV2I GAAGAC 2 cut(s) 86, 686
BstX2I RGATCY 2 cut(s) 563, 1087
BstXI CCANNNNNNTGG 1 cut(s) 1334
BstYI RGATCY 2 cut(s) 563, 1087
Bsu15I ATCGAT 1 cut(s) 1415
Bsu36I CCTNAGG 1 cut(s) 1082
BsuRI GGCC 4 cut(s) 828, 1080, 1099, 1204
BsuTUI ATCGAT 1 cut(s) 1415
BtsCI GGATG 2 cut(s) 475, 1017
BtsI GCAGTG 1 cut(s) 1414
BtsIMutI CAGTG 3 cut(s) 654, 1414, 1501
Cac8I GCNNGC 3 cut(s) 12, 826, 1299
CciI TCATGA 1 cut(s) 415
CfoI GCGC 2 cut(s) 165, 1473
Cfr10I RCCGGY 2 cut(s) 125, 1109
Cfr13I GGNCC 3 cut(s) 756, 1203, 1377
ClaI ATCGAT 1 cut(s) 1415
Csp6I GTAC 6 cut(s) 193, 269, 397, 812, 1289, 1488
CspAI ACCGGT 1 cut(s) 1109
CviAII CATG 2 cut(s) 416, 1042
CviQI GTAC 6 cut(s) 193, 269, 397, 812, 1289, 1488
DdeI CTNAG 3 cut(s) 111, 1082, 1285
DpnI GATC 6 cut(s) 565, 861, 1089, 1266, 1414, 1571
DpnII GATC 6 cut(s) 563, 859, 1087, 1264, 1412, 1569
DriI GACNNNNNGTC 1 cut(s) 687
Eam1104I CTCTTC 3 cut(s) 414, 876, 1308
Eam1105I GACNNNNNGTC 1 cut(s) 687
EarI CTCTTC 3 cut(s) 414, 876, 1308
EciI GGCGGA 1 cut(s) 1468
Eco130I CCWWGG 1 cut(s) 465
Eco147I AGGCCT 2 cut(s) 1080, 1099
Eco47I GGWCC 2 cut(s) 756, 1377
Eco57I CTGAAG 1 cut(s) 1523
Eco81I CCTNAGG 1 cut(s) 1082
EcoNI CCTNNNNNAGG 1 cut(s) 1527
EcoRI GAATTC 1 cut(s) 1360
EcoRII CCWGG 2 cut(s) 1012, 1326
EcoT14I CCWWGG 1 cut(s) 465
ErhI CCWWGG 1 cut(s) 465
FaeI CATG 2 cut(s) 419, 1045
FalI AAGNNNNNCTT 4 cut(s) 963, 995, 1075, 1107
FaqI GGGAC 3 cut(s) 271, 760, 955
FatI CATG 2 cut(s) 415, 1041
FauNDI CATATG 1 cut(s) 142
FbaI TGATCA 1 cut(s) 1569
Fnu4HI GCNGC 5 cut(s) 102, 251, 254, 737, 843
FokI GGATG 2 cut(s) 482, 1004
Fsp4HI GCNGC 5 cut(s) 102, 251, 254, 737, 843
FspBI CTAG 7 cut(s) 54, 290, 489, 606, 1076, 1095, 1485
GlaI GCGC 2 cut(s) 164, 1472
GluI GCNGC 5 cut(s) 102, 251, 254, 737, 843
GsaI CCCAGC 2 cut(s) 743, 1439
HaeIII GGCC 4 cut(s) 828, 1080, 1099, 1204
HapII CCGG 2 cut(s) 126, 1110
HhaI GCGC 2 cut(s) 165, 1473
Hin1II CATG 2 cut(s) 419, 1045
Hin6I GCGC 2 cut(s) 163, 1471
HinP1I GCGC 2 cut(s) 163, 1471
HincII GTYRAC 1 cut(s) 1234
HindII GTYRAC 1 cut(s) 1234
HindIII AAGCTT 1 cut(s) 1248
HinfI GANTC 8 cut(s) 185, 412, 665, 773, 799, 1172, 1352, 1442
HpaII CCGG 2 cut(s) 126, 1110
HphI GGTGA 3 cut(s) 808, 1133, 1349
Hpy166II GTNNAC 4 cut(s) 172, 695, 1234, 1513
Hpy188I TCNGA 1 cut(s) 629
Hpy188III TCNNGA 5 cut(s) 416, 567, 803, 991, 1307
Hpy8I GTNNAC 4 cut(s) 172, 695, 1234, 1513
HpyAV CCTTC 4 cut(s) 293, 708, 1101, 1498
HpyCH4III ACNGT 5 cut(s) 379, 401, 555, 1056, 1199
HpyCH4IV ACGT 2 cut(s) 907, 1367
HpyF10VI GCNNNNNNNGC 2 cut(s) 442, 1124
HpyF3I CTNAG 3 cut(s) 111, 1082, 1285
HpySE526I ACGT 2 cut(s) 907, 1367
Hsp92II CATG 2 cut(s) 419, 1045
HspAI GCGC 2 cut(s) 163, 1471
Ksp22I TGATCA 1 cut(s) 1569
Kzo9I GATC 6 cut(s) 563, 859, 1087, 1264, 1412, 1569
LguI GCTCTTC 1 cut(s) 1308
LmnI GCTCC 3 cut(s) 718, 850, 1318
Lsp1109I GCAGC 3 cut(s) 240, 748, 829
LweI GCATC 3 cut(s) 964, 1026, 1114
MaeI CTAG 7 cut(s) 54, 290, 489, 606, 1076, 1095, 1485
MaeII ACGT 2 cut(s) 907, 1367
MaeIII GTNAC 5 cut(s) 205, 373, 865, 895, 1496
MalI GATC 6 cut(s) 565, 861, 1089, 1266, 1414, 1571
MbiI CCGCTC 1 cut(s) 713
MboI GATC 6 cut(s) 563, 859, 1087, 1264, 1412, 1569
MflI RGATCY 2 cut(s) 563, 1087
MhlI GDGCHC 4 cut(s) 12, 363, 656, 1185
MluCI AATT 9 cut(s) 21, 84, 573, 764, 957, 1191, 1360, 1421, 1579
MlyI GAGTC 5 cut(s) 421, 659, 782, 1181, 1436
MmeI TCCRAC 1 cut(s) 1350
MroXI GAANNNNTTC 1 cut(s) 1071
MseI TTAA 4 cut(s) 390, 903, 963, 1194
MslI CAYNNNNRTG 1 cut(s) 141
MspA1I CMGCKG 2 cut(s) 739, 842
MspI CCGG 2 cut(s) 126, 1110
MspR9I CCNGG 2 cut(s) 1014, 1328
Mva1269I GAATGC 2 cut(s) 317, 1161
MvaI CCWGG 2 cut(s) 1014, 1328
MwoI GCNNNNNNNGC 2 cut(s) 442, 1124
NdeI CATATG 1 cut(s) 142
NdeII GATC 6 cut(s) 563, 859, 1087, 1264, 1412, 1569
NlaIII CATG 2 cut(s) 419, 1045
NlaIV GGNNCC 4 cut(s) 124, 1089, 1182, 1314
NmuCI GTSAC 3 cut(s) 373, 865, 1496
PagI TCATGA 1 cut(s) 415
PceI AGGCCT 2 cut(s) 1080, 1099
PciSI GCTCTTC 1 cut(s) 1308
PctI GAATGC 2 cut(s) 317, 1161
PdmI GAANNNNTTC 1 cut(s) 1071
PfeI GAWTC 3 cut(s) 185, 799, 1352
PinAI ACCGGT 1 cut(s) 1109
PkrI GCNGC 5 cut(s) 103, 252, 255, 738, 844
PleI GAGTC 5 cut(s) 420, 659, 781, 1180, 1436
PpsI GAGTC 5 cut(s) 420, 659, 781, 1180, 1436
PsiI TTATAA 1 cut(s) 26
Psp1406I AACGTT 1 cut(s) 1367
Psp6I CCWGG 2 cut(s) 1012, 1326
PspFI CCCAGC 2 cut(s) 739, 1435
PspGI CCWGG 2 cut(s) 1012, 1326
PspN4I GGNNCC 4 cut(s) 124, 1089, 1182, 1314
PspPI GGNCC 3 cut(s) 756, 1203, 1377
PsuI RGATCY 2 cut(s) 563, 1087
PvuII CAGCTG 2 cut(s) 739, 842
RsaI GTAC 6 cut(s) 194, 270, 398, 813, 1290, 1489
RsaNI GTAC 6 cut(s) 193, 269, 397, 812, 1289, 1488
RseI CAYNNNNRTG 1 cut(s) 141
SapI GCTCTTC 1 cut(s) 1308
SaqAI TTAA 4 cut(s) 390, 903, 963, 1194
SatI GCNGC 5 cut(s) 102, 251, 254, 737, 843
Sau3AI GATC 6 cut(s) 563, 859, 1087, 1264, 1412, 1569
Sau96I GGNCC 3 cut(s) 756, 1203, 1377
ScaI AGTACT 1 cut(s) 398
SchI GAGTC 5 cut(s) 421, 659, 782, 1181, 1436
ScrFI CCNGG 2 cut(s) 1014, 1328
SduI GDGCHC 4 cut(s) 12, 363, 656, 1185
SfaNI GCATC 3 cut(s) 964, 1026, 1114
SfcI CTRYAG 1 cut(s) 1164
SinI GGWCC 2 cut(s) 756, 1377
SmiMI CAYNNNNRTG 1 cut(s) 141
SpeI ACTAGT 1 cut(s) 1484
Sse9I AATT 9 cut(s) 21, 84, 573, 764, 957, 1191, 1360, 1421, 1579
SseBI AGGCCT 2 cut(s) 1080, 1099
SsiI CCGC 5 cut(s) 101, 250, 711, 1405, 1479
SspI AATATT 2 cut(s) 278, 1072
SspMI CTAG 7 cut(s) 54, 290, 489, 606, 1076, 1095, 1485
StuI AGGCCT 2 cut(s) 1080, 1099
StyD4I CCNGG 2 cut(s) 1012, 1326
StyI CCWWGG 1 cut(s) 465
TaaI ACNGT 5 cut(s) 379, 401, 555, 1056, 1199
TaiI ACGT 2 cut(s) 910, 1370
TaqI TCGA 3 cut(s) 321, 1306, 1415
TasI AATT 9 cut(s) 21, 84, 573, 764, 957, 1191, 1360, 1421, 1579
TatI WGTACW 4 cut(s) 192, 396, 811, 1487
TauI GCSGC 2 cut(s) 104, 253
TfiI GAWTC 3 cut(s) 185, 799, 1352
Tru1I TTAA 4 cut(s) 390, 903, 963, 1194
Tru9I TTAA 4 cut(s) 390, 903, 963, 1194
TscAI CASTG 3 cut(s) 661, 1414, 1501
TseFI GTSAC 3 cut(s) 373, 865, 1496
TseI GCWGC 3 cut(s) 253, 736, 842
Tsp45I GTSAC 3 cut(s) 373, 865, 1496
TspDTI ATGAA 8 cut(s) 309, 357, 432, 491, 690, 1058, 1080, 1236
TspGWI ACGGA 1 cut(s) 496
TspRI CASTG 3 cut(s) 661, 1414, 1501
VpaK11BI GGWCC 2 cut(s) 756, 1377
XagI CCTNNNNNAGG 1 cut(s) 1527
XapI RAATTY 3 cut(s) 957, 1360, 1421
XcmI CCANNNNNNNNNTGG 1 cut(s) 998
XmnI GAANNNNTTC 1 cut(s) 1071
XspI CTAG 7 cut(s) 54, 290, 489, 606, 1076, 1095, 1485
ZrmI AGTACT 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.