The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G05010 AT5G05010 |
| fragaria_vesca | FvH4_5g25700 FvH4_5g25700 FvH4_5g25700 FvH4_5g27071 FvH4_5g27071 |
| malus_domestica | MD09G1288200.v1.1 MD17G1280500.v1.1 |
| prunus_persica | Prupe.3G005000_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr7g0216031 |
| rosa_laevigata | RLG00000002598 |
| rosa_multiflora | Rmu_sc0002356.1_g000010 Rmu_sc0007828.1_g000007 |
| rosa_roxburghii | Rroxscaffold_3G00243720 |
| rosa_rugosa | Rorug07G0158300 Rorug07G0158300 |
| rosa_samantha | Rh7AG295500 Rh7BG287600 Rh7CG315900 Rh7DG298400 |
| rosa_wichuraiana | Rw7G025130 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 26 |
| AciI | CCGC | 2 cut(s) | 14, 101 |
| AfaI | GTAC | 2 cut(s) | 270, 398 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 115 |
| AluBI | AGCT | 5 cut(s) | 188, 265, 317, 427, 436 |
| AluI | AGCT | 5 cut(s) | 188, 265, 317, 427, 436 |
| Alw26I | GTCTC | 4 cut(s) | 78, 143, 236, 455 |
| AoxI | GGCC | 1 cut(s) | 544 |
| ApeKI | GCWGC | 1 cut(s) | 253 |
| AspLEI | GCGC | 1 cut(s) | 165 |
| AspS9I | GGNCC | 1 cut(s) | 544 |
| AsuHPI | GGTGA | 2 cut(s) | 400, 539 |
| BaeGI | GKGCMC | 1 cut(s) | 363 |
| BbsI | GAAGAC | 1 cut(s) | 86 |
| BbvI | GCAGC | 1 cut(s) | 240 |
| BccI | CCATC | 1 cut(s) | 400 |
| BcoDI | GTCTC | 4 cut(s) | 78, 143, 236, 455 |
| BfaI | CTAG | 2 cut(s) | 203, 290 |
| BisI | GCNGC | 3 cut(s) | 15, 102, 254 |
| BlsI | GCNGC | 3 cut(s) | 16, 103, 255 |
| BmcAI | AGTACT | 1 cut(s) | 398 |
| BmgT120I | GGNCC | 1 cut(s) | 544 |
| BpiI | GAAGAC | 1 cut(s) | 86 |
| BsaI | GGTCTC | 1 cut(s) | 455 |
| BsaJI | CCNNGG | 1 cut(s) | 465 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 511, 541 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 115 |
| Bse1I | ACTGG | 2 cut(s) | 130, 489 |
| BseDI | CCNNGG | 1 cut(s) | 465 |
| BseGI | GGATG | 1 cut(s) | 475 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 115 |
| BseNI | ACTGG | 2 cut(s) | 130, 489 |
| BseSI | GKGCMC | 1 cut(s) | 363 |
| BseXI | GCAGC | 1 cut(s) | 240 |
| BshFI | GGCC | 1 cut(s) | 546 |
| BslFI | GGGAC | 1 cut(s) | 271 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 115 |
| BsmAI | GTCTC | 4 cut(s) | 78, 143, 236, 455 |
| BsmBI | CGTCTC | 1 cut(s) | 143 |
| BsmFI | GGGAC | 1 cut(s) | 271 |
| BsnI | GGCC | 1 cut(s) | 546 |
| Bso31I | GGTCTC | 1 cut(s) | 455 |
| Bsp1286I | GDGCHC | 1 cut(s) | 363 |
| BspACI | CCGC | 2 cut(s) | 14, 101 |
| BspANI | GGCC | 1 cut(s) | 546 |
| BspHI | TCATGA | 1 cut(s) | 415 |
| BspTNI | GGTCTC | 1 cut(s) | 455 |
| BsrI | ACTGG | 2 cut(s) | 130, 489 |
| BssECI | CCNNGG | 1 cut(s) | 465 |
| BssT1I | CCWWGG | 1 cut(s) | 465 |
| Bst4CI | ACNGT | 2 cut(s) | 379, 401 |
| Bst6I | CTCTTC | 2 cut(s) | 291, 414 |
| BstDEI | CTNAG | 3 cut(s) | 111, 229, 261 |
| BstF5I | GGATG | 1 cut(s) | 475 |
| BstHHI | GCGC | 1 cut(s) | 165 |
| BstMAI | GTCTC | 4 cut(s) | 78, 143, 236, 455 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 262, 433, 442 |
| BstSLI | GKGCMC | 1 cut(s) | 363 |
| BstV1I | GCAGC | 1 cut(s) | 240 |
| BstV2I | GAAGAC | 1 cut(s) | 86 |
| BsuRI | GGCC | 1 cut(s) | 546 |
| BtsCI | GGATG | 1 cut(s) | 475 |
| BtsIMutI | CAGTG | 3 cut(s) | 123, 375, 496 |
| CciI | TCATGA | 1 cut(s) | 415 |
| CfoI | GCGC | 1 cut(s) | 165 |
| Cfr13I | GGNCC | 1 cut(s) | 544 |
| Csp6I | GTAC | 2 cut(s) | 269, 397 |
| CviAII | CATG | 1 cut(s) | 416 |
| CviQI | GTAC | 2 cut(s) | 269, 397 |
| DdeI | CTNAG | 3 cut(s) | 111, 229, 261 |
| Eam1104I | CTCTTC | 2 cut(s) | 291, 414 |
| EarI | CTCTTC | 2 cut(s) | 291, 414 |
| Eco130I | CCWWGG | 1 cut(s) | 465 |
| Eco31I | GGTCTC | 1 cut(s) | 455 |
| EcoT14I | CCWWGG | 1 cut(s) | 465 |
| EcoT22I | ATGCAT | 1 cut(s) | 283 |
| ErhI | CCWWGG | 1 cut(s) | 465 |
| Esp3I | CGTCTC | 1 cut(s) | 143 |
| FaeI | CATG | 1 cut(s) | 419 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 411, 443 |
| FaqI | GGGAC | 1 cut(s) | 271 |
| FatI | CATG | 1 cut(s) | 415 |
| FauNDI | CATATG | 1 cut(s) | 142 |
| Fnu4HI | GCNGC | 3 cut(s) | 15, 102, 254 |
| FokI | GGATG | 1 cut(s) | 482 |
| Fsp4HI | GCNGC | 3 cut(s) | 15, 102, 254 |
| FspBI | CTAG | 2 cut(s) | 203, 290 |
| GlaI | GCGC | 1 cut(s) | 164 |
| GluI | GCNGC | 3 cut(s) | 15, 102, 254 |
| HaeIII | GGCC | 1 cut(s) | 546 |
| HhaI | GCGC | 1 cut(s) | 165 |
| Hin1II | CATG | 1 cut(s) | 419 |
| Hin6I | GCGC | 1 cut(s) | 163 |
| HinP1I | GCGC | 1 cut(s) | 163 |
| HindIII | AAGCTT | 4 cut(s) | 186, 263, 425, 434 |
| HinfI | GANTC | 1 cut(s) | 412 |
| HphI | GGTGA | 2 cut(s) | 400, 539 |
| Hpy166II | GTNNAC | 1 cut(s) | 172 |
| Hpy188III | TCNNGA | 3 cut(s) | 148, 416, 566 |
| Hpy8I | GTNNAC | 1 cut(s) | 172 |
| HpyCH4III | ACNGT | 2 cut(s) | 379, 401 |
| HpyCH4V | TGCA | 5 cut(s) | 281, 309, 383, 445, 552 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 262, 433, 442 |
| HpyF3I | CTNAG | 3 cut(s) | 111, 229, 261 |
| Hsp92II | CATG | 1 cut(s) | 419 |
| HspAI | GCGC | 1 cut(s) | 163 |
| LmnI | GCTCC | 1 cut(s) | 519 |
| LpnPI | CCDG | 8 cut(s) | 21, 111, 188, 285, 295, 371, 502, 551 |
| Lsp1109I | GCAGC | 1 cut(s) | 240 |
| MaeI | CTAG | 2 cut(s) | 203, 290 |
| MaeIII | GTNAC | 2 cut(s) | 205, 373 |
| MboII | GAAGA | 5 cut(s) | 86, 245, 308, 431, 581 |
| MhlI | GDGCHC | 1 cut(s) | 363 |
| MluCI | AATT | 1 cut(s) | 572 |
| MlyI | GAGTC | 1 cut(s) | 421 |
| MnlI | CCTC | 6 cut(s) | 48, 82, 243, 292, 518, 529 |
| Mph1103I | ATGCAT | 1 cut(s) | 283 |
| MslI | CAYNNNNRTG | 1 cut(s) | 141 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 262, 433, 442 |
| NdeI | CATATG | 1 cut(s) | 142 |
| NlaIII | CATG | 1 cut(s) | 419 |
| NmuCI | GTSAC | 1 cut(s) | 373 |
| NsiI | ATGCAT | 1 cut(s) | 283 |
| PagI | TCATGA | 1 cut(s) | 415 |
| PkrI | GCNGC | 3 cut(s) | 16, 103, 255 |
| PleI | GAGTC | 1 cut(s) | 420 |
| PpsI | GAGTC | 1 cut(s) | 420 |
| PsiI | TTATAA | 1 cut(s) | 26 |
| PspPI | GGNCC | 1 cut(s) | 544 |
| RsaI | GTAC | 2 cut(s) | 270, 398 |
| RsaNI | GTAC | 2 cut(s) | 269, 397 |
| RseI | CAYNNNNRTG | 1 cut(s) | 141 |
| SatI | GCNGC | 3 cut(s) | 15, 102, 254 |
| Sau96I | GGNCC | 1 cut(s) | 544 |
| ScaI | AGTACT | 1 cut(s) | 398 |
| SchI | GAGTC | 1 cut(s) | 421 |
| SduI | GDGCHC | 1 cut(s) | 363 |
| SetI | ASST | 8 cut(s) | 190, 267, 274, 319, 390, 429, 438, 529 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 141 |
| Sse9I | AATT | 1 cut(s) | 572 |
| SsiI | CCGC | 2 cut(s) | 14, 101 |
| SspMI | CTAG | 2 cut(s) | 203, 290 |
| StyI | CCWWGG | 1 cut(s) | 465 |
| TaaI | ACNGT | 2 cut(s) | 379, 401 |
| TaqI | TCGA | 3 cut(s) | 53, 147, 321 |
| TasI | AATT | 1 cut(s) | 572 |
| TatI | WGTACW | 1 cut(s) | 396 |
| TauI | GCSGC | 2 cut(s) | 17, 104 |
| TscAI | CASTG | 3 cut(s) | 130, 382, 496 |
| TseFI | GTSAC | 1 cut(s) | 373 |
| TseI | GCWGC | 1 cut(s) | 253 |
| Tsp45I | GTSAC | 1 cut(s) | 373 |
| TspDTI | ATGAA | 4 cut(s) | 309, 357, 432, 491 |
| TspGWI | ACGGA | 2 cut(s) | 10, 167 |
| TspRI | CASTG | 3 cut(s) | 130, 382, 496 |
| XspI | CTAG | 2 cut(s) | 203, 290 |
| ZrmI | AGTACT | 1 cut(s) | 398 |
| Zsp2I | ATGCAT | 1 cut(s) | 283 |