Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0005688

Physical Location & Seq

Genomic Coordinates Forward (+)

2486595 .. 2487436

Gene Structure 842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G033900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGAAGAAGCGTCAAATATCTGGCTCAGGAAATGAAATTCTGACAAAAGACATCATTCTTGATCAGATATCAGAGTGTTCATCCTATGGGATAAGCAGAAGAGACACCATAGAGGCTGATGGTCAGATGCTTGAGTTGTGGGAAACCACTGACCAGGATGCCAGCATTGATTTGATGGTTGGCAAGGGCCAGAAGGTGGACGCTGTACCAACTGACCACAAATCATTGGTTGAGAAGGAATTGGACATGGACAAATTAGAGATCTCTAAAAGATTTACAGAGCCCCGTCAAGAAGGCAACAAGAGAAGGATTCTAGAAAGACTTGATTCTGATGTACAAAAGTTGACAAACCTTCAAATAACCGGGCAGTTGGAAGAAGCTGACGAGGCCATCACTAAGTTGTTTGATGTCAATCAAAAATTGATGAAGAACGTTGAAGATGGTCCTCTGTTCTCTGATGGAGCTTCTGGGGTAGTGTCGGATGAAAGTTGGAGTGTGAGAAGAAGGAGACTTTCAGAGCAAGCAAAGGAAGGGTCTGAAAAAATCGGGCGGCTACAGTTGGAGGTGCAGAAACTGCAATTTCTTCTACTGAAACTTGATGGTGAAAAAGAAAGCAGAGGATCAACAAGGATCACGGAGCGGAAAACAAGAGTTCTTCTGAGGGACTATATCTATGGTGGCAATAGAACCAGCCAGAAACGCAAGAAAGCGCCCTTCTGTGCATGCATACAGCCCCCAACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KIP1

Protein Analysis

248

Amino Acids

28.09

Weight (kDa)

6.68

Isoelectric Point (pI)

53.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005688)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03080 AT1G03080 AT1G03080
fragaria_vesca	FvH4_2g23102 FvH4_2g23102 FvH4_2g23102
malus_domestica	MD03G1260100.v1.1 MD11G1280400.v1.1
prunus_persica	Prupe.3G033900_v2.0.a1 Prupe.8G236300_v2.0.a1 Prupe.8G236300_v2.0.a1 Prupe.8G236300_v2.0.a1
pyrus_communis	pycom03g20780 pycom11g24800 pycom11g24810
rosa_chinensis	RchiOBHm_Chr6g0290321
rosa_laevigata	RLG00000012227
rosa_multiflora	Rmu_co8491113.1_g000001 Rmu_sc0008900.1_g000002
rosa_roxburghii	Rroxscaffold_7G00177160
rosa_rugosa	Rorug06G0211700 Rorug06G0211800
rosa_samantha	Rh6AG322100 Rh6BG329400 Rh6CG335300 Rh6DG322300
rosa_wichuraiana	Rw6G027810 Rw6G027910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	196
AccBSI	CCGCTC	1 cut(s)	640
AciI	CCGC	2 cut(s)	550, 640
AclI	AACGTT	1 cut(s)	432
AclWI	GGATC	2 cut(s)	628, 638
AcsI	RAATTY	1 cut(s)	36
AfaI	GTAC	2 cut(s)	207, 336
AfiI	CCNNNNNNNGG	1 cut(s)	196
AgsI	TTSAA	2 cut(s)	356, 437
AjnI	CCWGG	1 cut(s)	153
AluBI	AGCT	2 cut(s)	380, 464
AluI	AGCT	2 cut(s)	380, 464
Alw26I	GTCTC	2 cut(s)	96, 502
AlwI	GGATC	2 cut(s)	628, 638
AlwNI	CAGNNNCTG	1 cut(s)	574
AoxI	GGCC	2 cut(s)	187, 387
ApoI	RAATTY	1 cut(s)	36
ArsI	GACNNNNNNTTYG	2 cut(s)	518, 550
AspLEI	GCGC	1 cut(s)	712
AspS9I	GGNCC	2 cut(s)	187, 443
AsuC2I	CCSGG	1 cut(s)	364
AsuHPI	GGTGA	1 cut(s)	614
AvaII	GGWCC	1 cut(s)	443
BanII	GRGCYC	1 cut(s)	285
BccI	CCATC	6 cut(s)	113, 169, 398, 434, 452, 593
BciT130I	CCWGG	1 cut(s)	155
BclI	TGATCA	1 cut(s)	61
BcnI	CCSGG	1 cut(s)	364
BcoDI	GTCTC	2 cut(s)	96, 502
BfaI	CTAG	2 cut(s)	314, 742
BfmI	CTRYAG	1 cut(s)	554
BfoI	RGCGCY	1 cut(s)	713
BglII	AGATCT	1 cut(s)	261
BisI	GCNGC	1 cut(s)	551
BlsI	GCNGC	1 cut(s)	552
Bme1390I	CCNGG	2 cut(s)	155, 364
Bme18I	GGWCC	1 cut(s)	443
BmgT120I	GGNCC	2 cut(s)	187, 443
BmrFI	CCNGG	2 cut(s)	155, 364
BmsI	GCATC	2 cut(s)	117, 148
Bpu10I	CCTNAGC	1 cut(s)	25
BpuEI	CTTGAG	1 cut(s)	152
BpuMI	CCSGG	1 cut(s)	364
BsaBI	GATNNNNATC	1 cut(s)	411
Bsc4I	CCNNNNNNNGG	1 cut(s)	196
Bse8I	GATNNNNATC	1 cut(s)	411
BseBI	CCWGG	1 cut(s)	155
BseGI	GGATG	3 cut(s)	80, 163, 487
BseJI	GATNNNNATC	1 cut(s)	411
BseLI	CCNNNNNNNGG	1 cut(s)	196
BseMII	CTCAG	2 cut(s)	39, 650
BsgI	GTGCAG	1 cut(s)	587
BshFI	GGCC	2 cut(s)	189, 389
BsiSI	CCGG	1 cut(s)	363
BslFI	GGGAC	1 cut(s)	677
BslI	CCNNNNNNNGG	1 cut(s)	196
BsmAI	GTCTC	2 cut(s)	96, 502
BsmFI	GGGAC	1 cut(s)	677
BsnI	GGCC	2 cut(s)	189, 389
Bsp1286I	GDGCHC	1 cut(s)	285
Bsp1407I	TGTACA	1 cut(s)	334
Bsp143I	GATC	4 cut(s)	61, 261, 620, 630
BspACI	CCGC	2 cut(s)	550, 640
BspANI	GGCC	2 cut(s)	189, 389
BspCNI	CTCAG	2 cut(s)	38, 651
BspPI	GGATC	2 cut(s)	628, 638
BsrBI	CCGCTC	1 cut(s)	640
BsrGI	TGTACA	1 cut(s)	334
BssMI	GATC	4 cut(s)	61, 261, 620, 630
Bst2UI	CCWGG	1 cut(s)	155
Bst4CI	ACNGT	1 cut(s)	558
Bst6I	CTCTTC	1 cut(s)	94
BstAPI	GCANNNNNTGC	1 cut(s)	574
BstAUI	TGTACA	1 cut(s)	334
BstC8I	GCNNGC	3 cut(s)	163, 522, 724
BstDEI	CTNAG	3 cut(s)	25, 396, 659
BstF5I	GGATG	3 cut(s)	80, 163, 487
BstH2I	RGCGCY	1 cut(s)	713
BstHHI	GCGC	1 cut(s)	712
BstKTI	GATC	4 cut(s)	64, 264, 623, 633
BstMAI	GTCTC	2 cut(s)	96, 502
BstMBI	GATC	4 cut(s)	61, 261, 620, 630
BstMWI	GCNNNNNNNGC	3 cut(s)	386, 574, 699
BstNI	CCWGG	1 cut(s)	155
BstNSI	RCATGY	1 cut(s)	726
BstSCI	CCNGG	2 cut(s)	153, 362
BstSFI	CTRYAG	1 cut(s)	554
BstX2I	RGATCY	1 cut(s)	261
BstYI	RGATCY	1 cut(s)	261
BsuRI	GGCC	2 cut(s)	189, 389
BtsCI	GGATG	3 cut(s)	80, 163, 487
BtsIMutI	CAGTG	1 cut(s)	147
Cac8I	GCNNGC	3 cut(s)	163, 522, 724
CaiI	CAGNNNCTG	1 cut(s)	574
CfoI	GCGC	1 cut(s)	712
Cfr13I	GGNCC	2 cut(s)	187, 443
CseI	GACGC	1 cut(s)	209
Csp6I	GTAC	2 cut(s)	206, 335
CviAII	CATG	2 cut(s)	247, 723
CviQI	GTAC	2 cut(s)	206, 335
DdeI	CTNAG	3 cut(s)	25, 396, 659
DpnI	GATC	4 cut(s)	63, 263, 622, 632
DpnII	GATC	4 cut(s)	61, 261, 620, 630
Eam1104I	CTCTTC	1 cut(s)	94
EarI	CTCTTC	1 cut(s)	94
Eco24I	GRGCYC	1 cut(s)	285
Eco32I	GATATC	1 cut(s)	69
Eco47I	GGWCC	1 cut(s)	443
EcoRII	CCWGG	1 cut(s)	153
EcoRV	GATATC	1 cut(s)	69
EcoT22I	ATGCAT	1 cut(s)	728
EcoT38I	GRGCYC	1 cut(s)	285
FaeI	CATG	2 cut(s)	250, 726
FaiI	YATR	7 cut(s)	87, 110, 248, 669, 675, 724, 728
FaqI	GGGAC	1 cut(s)	677
FatI	CATG	2 cut(s)	246, 722
FbaI	TGATCA	1 cut(s)	61
Fnu4HI	GCNGC	1 cut(s)	551
FokI	GGATG	3 cut(s)	67, 170, 494
FriOI	GRGCYC	1 cut(s)	285
Fsp4HI	GCNGC	1 cut(s)	551
FspBI	CTAG	2 cut(s)	314, 742
GlaI	GCGC	1 cut(s)	711
GluI	GCNGC	1 cut(s)	551
HaeII	RGCGCY	1 cut(s)	713
HaeIII	GGCC	2 cut(s)	189, 389
HapII	CCGG	1 cut(s)	363
HgaI	GACGC	1 cut(s)	209
HhaI	GCGC	1 cut(s)	712
Hin1II	CATG	2 cut(s)	250, 726
Hin6I	GCGC	1 cut(s)	710
HinP1I	GCGC	1 cut(s)	710
HincII	GTYRAC	1 cut(s)	345
HindII	GTYRAC	1 cut(s)	345
HinfI	GANTC	2 cut(s)	310, 326
HpaII	CCGG	1 cut(s)	363
HphI	GGTGA	1 cut(s)	614
Hpy166II	GTNNAC	2 cut(s)	199, 345
Hpy188III	TCNNGA	4 cut(s)	27, 59, 290, 314
Hpy8I	GTNNAC	2 cut(s)	199, 345
HpyAV	CCTTC	8 cut(s)	187, 229, 287, 300, 362, 498, 524, 724
HpyCH4III	ACNGT	1 cut(s)	558
HpyCH4IV	ACGT	1 cut(s)	432
HpyCH4V	TGCA	4 cut(s)	568, 577, 722, 726
HpyF10VI	GCNNNNNNNGC	3 cut(s)	386, 574, 699
HpyF3I	CTNAG	3 cut(s)	25, 396, 659
HpySE526I	ACGT	1 cut(s)	432
Hsp92II	CATG	2 cut(s)	250, 726
HspAI	GCGC	1 cut(s)	710
Ksp22I	TGATCA	1 cut(s)	61
Kzo9I	GATC	4 cut(s)	61, 261, 620, 630
LmnI	GCTCC	2 cut(s)	461, 637
LweI	GCATC	2 cut(s)	117, 148
MaeI	CTAG	2 cut(s)	314, 742
MaeII	ACGT	1 cut(s)	432
MalI	GATC	4 cut(s)	63, 263, 622, 632
MbiI	CCGCTC	1 cut(s)	640
MboI	GATC	4 cut(s)	61, 261, 620, 630
MboII	GAAGA	8 cut(s)	16, 111, 386, 439, 449, 513, 575, 647
MflI	RGATCY	1 cut(s)	261
MhlI	GDGCHC	1 cut(s)	285
MluCI	AATT	5 cut(s)	36, 239, 254, 419, 578
MmeI	TCCRAC	4 cut(s)	351, 459, 470, 540
MnlI	CCTC	6 cut(s)	106, 379, 456, 556, 611, 654
Mph1103I	ATGCAT	1 cut(s)	728
MspI	CCGG	1 cut(s)	363
MspR9I	CCNGG	2 cut(s)	155, 364
MvaI	CCWGG	1 cut(s)	155
MwoI	GCNNNNNNNGC	3 cut(s)	386, 574, 699
NciI	CCSGG	1 cut(s)	364
NdeII	GATC	4 cut(s)	61, 261, 620, 630
NlaIII	CATG	2 cut(s)	250, 726
NsiI	ATGCAT	1 cut(s)	728
NspI	RCATGY	1 cut(s)	726
PaeI	GCATGC	1 cut(s)	726
PfeI	GAWTC	2 cut(s)	310, 326
PflMI	CCANNNNNTGG	1 cut(s)	196
PkrI	GCNGC	1 cut(s)	552
Psp1406I	AACGTT	1 cut(s)	432
Psp6I	CCWGG	1 cut(s)	153
PspGI	CCWGG	1 cut(s)	153
PspPI	GGNCC	2 cut(s)	187, 443
PstNI	CAGNNNCTG	1 cut(s)	574
PsuI	RGATCY	1 cut(s)	261
RsaI	GTAC	2 cut(s)	207, 336
RsaNI	GTAC	2 cut(s)	206, 335
SatI	GCNGC	1 cut(s)	551
Sau3AI	GATC	4 cut(s)	61, 261, 620, 630
Sau96I	GGNCC	2 cut(s)	187, 443
ScrFI	CCNGG	2 cut(s)	155, 364
SduI	GDGCHC	1 cut(s)	285
SetI	ASST	7 cut(s)	198, 354, 382, 435, 466, 567, 743
SfaNI	GCATC	2 cut(s)	117, 148
SfcI	CTRYAG	1 cut(s)	554
SinI	GGWCC	1 cut(s)	443
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
SphI	GCATGC	1 cut(s)	726
Sse9I	AATT	5 cut(s)	36, 239, 254, 419, 578
SsiI	CCGC	2 cut(s)	550, 640
SspMI	CTAG	2 cut(s)	314, 742
StyD4I	CCNGG	2 cut(s)	153, 362
TaaI	ACNGT	1 cut(s)	558
TaiI	ACGT	1 cut(s)	435
TasI	AATT	5 cut(s)	36, 239, 254, 419, 578
TatI	WGTACW	1 cut(s)	334
TauI	GCSGC	1 cut(s)	553
TfiI	GAWTC	2 cut(s)	310, 326
TscAI	CASTG	1 cut(s)	154
TspDTI	ATGAA	5 cut(s)	17, 48, 69, 440, 498
TspGWI	ACGGA	1 cut(s)	650
TspRI	CASTG	1 cut(s)	154
Van91I	CCANNNNNTGG	1 cut(s)	196
VpaK11BI	GGWCC	1 cut(s)	443
XapI	RAATTY	1 cut(s)	36
XbaI	TCTAGA	1 cut(s)	313
XceI	RCATGY	1 cut(s)	726
XspI	CTAG	2 cut(s)	314, 742
Zsp2I	ATGCAT	1 cut(s)	728

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.