Rorug06G0211700

KIP1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0005688
Physical Location & Seq
Forward (+)
33624405 .. 33625460
1056 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0211700.1

Sequence Viewer

Length: 510 bp
ATGGAACTTGCCAACAAGATTGCACTACTAGAAGCAGAAGGATCCAGCAGGCATTTCGCCTCCCAAGAGCTTTGCTATGCAACTAACAAATTCAGCTCTGACATGGTGATTAGAGAGGGTGGACCTAGCAAGGTGTACCGAGCCACTCTTGAAGATGGTCGAGCTGCAGCTGTGAAAGTTCTCAAAACCACACACCATTCAGTTAGTGATCTTTTCCGCGAAGTAGATTTTCTATCTAGTATGAATCTTAGGAGCATTGTTCAGATAATTGGTTGTCTGATTTTGGAGCAGCAATGGTACTTATCAATCTCAGCATGCAGATGCCCCTTTGATGTTGTCAAAACGTTTGGATACTTAGCCCCGGAGTACATGATGTATGGCCAGGTTGATGAGAACATAGATGTGTACTCATATGGAGCGGTTCTTCTAGAACTCATTACTGGAAAAGAGGCTATTCAAACCGATCAGGAGAATCGAGAAAGCTTAGTACTTTGGGTAATGGAATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIP1

Protein Analysis

169

Amino Acids

19.12

Weight (kDa)

4.87

Isoelectric Point (pI)

39.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 112 - 159 2.8e-07 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 419
AccII CGCG 1 cut(s) 219
AciI CCGC 2 cut(s) 217, 419
AclI AACGTT 1 cut(s) 344
AclWI GGATC 2 cut(s) 36, 49
AcoI YGGCCR 1 cut(s) 379
AcsI RAATTY 1 cut(s) 89
AfaI GTAC 5 cut(s) 137, 299, 368, 407, 489
AgsI TTSAA 2 cut(s) 152, 458
AjnI CCWGG 1 cut(s) 381
AluBI AGCT 5 cut(s) 70, 96, 164, 170, 483
AluI AGCT 5 cut(s) 70, 96, 164, 170, 483
AlwI GGATC 2 cut(s) 36, 49
AoxI GGCC 1 cut(s) 379
ApeKI GCWGC 3 cut(s) 164, 167, 289
ApoI RAATTY 1 cut(s) 89
AspS9I GGNCC 1 cut(s) 122
AsuC2I CCSGG 1 cut(s) 362
AsuHPI GGTGA 1 cut(s) 118
AvaII GGWCC 1 cut(s) 122
BalI TGGCCA 1 cut(s) 381
BamHI GGATCC 1 cut(s) 41
BbvI GCAGC 3 cut(s) 151, 179, 301
BccI CCATC 1 cut(s) 149
BcgI CGANNNNNNTGC 2 cut(s) 37, 71
BciT130I CCWGG 1 cut(s) 383
BciVI GTATCC 1 cut(s) 344
BcnI CCSGG 1 cut(s) 362
BfaI CTAG 4 cut(s) 29, 126, 237, 428
BfmI CTRYAG 1 cut(s) 165
BfuI GTATCC 1 cut(s) 344
BisI GCNGC 3 cut(s) 165, 168, 290
BlsI GCNGC 3 cut(s) 166, 169, 291
BmcAI AGTACT 1 cut(s) 489
Bme1390I CCNGG 2 cut(s) 362, 383
Bme18I GGWCC 1 cut(s) 122
BmgT120I GGNCC 1 cut(s) 122
BmiI GGNNCC 1 cut(s) 43
BmrFI CCNGG 2 cut(s) 362, 383
BmsI GCATC 1 cut(s) 311
BpuMI CCSGG 1 cut(s) 362
BsaJI CCNNGG 1 cut(s) 360
Bse1I ACTGG 1 cut(s) 445
Bse3DI GCAATG 1 cut(s) 299
BseBI CCWGG 1 cut(s) 383
BseDI CCNNGG 1 cut(s) 360
BseMI GCAATG 1 cut(s) 299
BseMII CTCAG 1 cut(s) 324
BseNI ACTGG 1 cut(s) 445
BseXI GCAGC 3 cut(s) 151, 179, 301
Bsh1236I CGCG 1 cut(s) 219
BshFI GGCC 1 cut(s) 381
BsiSI CCGG 1 cut(s) 362
BsnI GGCC 1 cut(s) 381
Bsp143I GATC 3 cut(s) 41, 208, 463
BspACI CCGC 2 cut(s) 217, 419
BspANI GGCC 1 cut(s) 381
BspCNI CTCAG 1 cut(s) 323
BspFNI CGCG 1 cut(s) 219
BspLI GGNNCC 1 cut(s) 43
BspMAI CTGCAG 1 cut(s) 169
BspPI GGATC 2 cut(s) 36, 49
BsrBI CCGCTC 1 cut(s) 419
BsrDI GCAATG 1 cut(s) 299
BsrI ACTGG 1 cut(s) 445
BssECI CCNNGG 1 cut(s) 360
BssMI GATC 3 cut(s) 41, 208, 463
Bst2UI CCWGG 1 cut(s) 383
BstC8I GCNNGC 2 cut(s) 50, 316
BstDEI CTNAG 4 cut(s) 248, 310, 355, 484
BstFNI CGCG 1 cut(s) 219
BstKTI GATC 3 cut(s) 44, 211, 466
BstMBI GATC 3 cut(s) 41, 208, 463
BstNI CCWGG 1 cut(s) 383
BstNSI RCATGY 1 cut(s) 318
BstSCI CCNGG 2 cut(s) 360, 381
BstSFI CTRYAG 1 cut(s) 165
BstUI CGCG 1 cut(s) 219
BstV1I GCAGC 3 cut(s) 151, 179, 301
BstX2I RGATCY 1 cut(s) 41
BstYI RGATCY 1 cut(s) 41
BsuI GTATCC 1 cut(s) 344
BsuRI GGCC 1 cut(s) 381
Cac8I GCNNGC 2 cut(s) 50, 316
Cfr13I GGNCC 1 cut(s) 122
Csp6I GTAC 5 cut(s) 136, 298, 367, 406, 488
CviAII CATG 3 cut(s) 103, 315, 370
CviJI RGCY 9 cut(s) 70, 96, 143, 164, 170, 359, 381, 452, 483
CviKI_1 RGCY 9 cut(s) 70, 96, 143, 164, 170, 359, 381, 452, 483
CviQI GTAC 5 cut(s) 136, 298, 367, 406, 488
DdeI CTNAG 4 cut(s) 248, 310, 355, 484
DpnI GATC 3 cut(s) 43, 210, 465
DpnII GATC 3 cut(s) 41, 208, 463
EaeI YGGCCR 1 cut(s) 379
Eco47I GGWCC 1 cut(s) 122
EcoRII CCWGG 1 cut(s) 381
FaeI CATG 3 cut(s) 106, 318, 373
FaiI YATR 9 cut(s) 78, 104, 242, 316, 371, 378, 398, 412, 414
FatI CATG 3 cut(s) 102, 314, 369
FauNDI CATATG 1 cut(s) 412
Fnu4HI GCNGC 3 cut(s) 165, 168, 290
Fsp4HI GCNGC 3 cut(s) 165, 168, 290
FspBI CTAG 4 cut(s) 29, 126, 237, 428
GluI GCNGC 3 cut(s) 165, 168, 290
HaeIII GGCC 1 cut(s) 381
HapII CCGG 1 cut(s) 362
Hin1II CATG 3 cut(s) 106, 318, 373
HindIII AAGCTT 1 cut(s) 481
HinfI GANTC 2 cut(s) 244, 472
HpaII CCGG 1 cut(s) 362
HphI GGTGA 1 cut(s) 118
Hpy166II GTNNAC 3 cut(s) 122, 136, 406
Hpy188I TCNGA 3 cut(s) 100, 264, 279
Hpy188III TCNNGA 4 cut(s) 149, 428, 467, 476
Hpy8I GTNNAC 3 cut(s) 122, 136, 406
HpyAV CCTTC 1 cut(s) 32
HpyCH4IV ACGT 1 cut(s) 344
HpyCH4V TGCA 4 cut(s) 23, 80, 167, 318
HpyF3I CTNAG 4 cut(s) 248, 310, 355, 484
HpySE526I ACGT 1 cut(s) 344
Hsp92II CATG 3 cut(s) 106, 318, 373
Kzo9I GATC 3 cut(s) 41, 208, 463
LmnI GCTCC 3 cut(s) 252, 286, 416
LpnPI CCDG 7 cut(s) 34, 58, 368, 375, 395, 426, 452
Lsp1109I GCAGC 3 cut(s) 151, 179, 301
LweI GCATC 1 cut(s) 311
MaeI CTAG 4 cut(s) 29, 126, 237, 428
MaeII ACGT 1 cut(s) 344
MalI GATC 3 cut(s) 43, 210, 465
MbiI CCGCTC 1 cut(s) 419
MboI GATC 3 cut(s) 41, 208, 463
MboII GAAGA 2 cut(s) 164, 416
MflI RGATCY 1 cut(s) 41
MlsI TGGCCA 1 cut(s) 381
MluCI AATT 2 cut(s) 89, 267
MluNI TGGCCA 1 cut(s) 381
MnlI CCTC 3 cut(s) 70, 109, 442
Mox20I TGGCCA 1 cut(s) 381
MscI TGGCCA 1 cut(s) 381
MslI CAYNNNNRTG 2 cut(s) 319, 401
Msp20I TGGCCA 1 cut(s) 381
MspA1I CMGCKG 1 cut(s) 170
MspI CCGG 1 cut(s) 362
MspR9I CCNGG 2 cut(s) 362, 383
MvaI CCWGG 1 cut(s) 383
MvnI CGCG 1 cut(s) 219
NciI CCSGG 1 cut(s) 362
NdeI CATATG 1 cut(s) 412
NdeII GATC 3 cut(s) 41, 208, 463
NlaIII CATG 3 cut(s) 106, 318, 373
NlaIV GGNNCC 1 cut(s) 43
NspI RCATGY 1 cut(s) 318
PaeI GCATGC 1 cut(s) 318
PfeI GAWTC 2 cut(s) 244, 472
PkrI GCNGC 3 cut(s) 166, 169, 291
Psp1406I AACGTT 1 cut(s) 344
Psp6I CCWGG 1 cut(s) 381
PspGI CCWGG 1 cut(s) 381
PspN4I GGNNCC 1 cut(s) 43
PspPI GGNCC 1 cut(s) 122
PstI CTGCAG 1 cut(s) 169
PsuI RGATCY 1 cut(s) 41
PvuII CAGCTG 1 cut(s) 170
RsaI GTAC 5 cut(s) 137, 299, 368, 407, 489
RsaNI GTAC 5 cut(s) 136, 298, 367, 406, 488
RseI CAYNNNNRTG 2 cut(s) 319, 401
SatI GCNGC 3 cut(s) 165, 168, 290
Sau3AI GATC 3 cut(s) 41, 208, 463
Sau96I GGNCC 1 cut(s) 122
ScaI AGTACT 1 cut(s) 489
ScrFI CCNGG 2 cut(s) 362, 383
SetI ASST 9 cut(s) 72, 98, 127, 135, 166, 172, 347, 387, 485
SfaNI GCATC 1 cut(s) 311
SfcI CTRYAG 1 cut(s) 165
SinI GGWCC 1 cut(s) 122
SmiMI CAYNNNNRTG 2 cut(s) 319, 401
SphI GCATGC 1 cut(s) 318
Sse9I AATT 2 cut(s) 89, 267
SsiI CCGC 2 cut(s) 217, 419
SspI AATATT 1 cut(s) 506
SspMI CTAG 4 cut(s) 29, 126, 237, 428
StyD4I CCNGG 2 cut(s) 360, 381
TaiI ACGT 1 cut(s) 347
TaqI TCGA 2 cut(s) 160, 475
TasI AATT 2 cut(s) 89, 267
TatI WGTACW 3 cut(s) 366, 405, 487
TfiI GAWTC 2 cut(s) 244, 472
TseI GCWGC 3 cut(s) 164, 167, 289
TspDTI ATGAA 1 cut(s) 257
VpaK11BI GGWCC 1 cut(s) 122
XapI RAATTY 1 cut(s) 89
XbaI TCTAGA 1 cut(s) 427
XceI RCATGY 1 cut(s) 318
XspI CTAG 4 cut(s) 29, 126, 237, 428
ZrmI AGTACT 1 cut(s) 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.