Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8491113.1

Orthogroup ID

OG0005688

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1563

Gene Structure 1563 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8491113.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

gatgcccttctgcaagctgagagctctcaaacggatggacatcaaattgacagagtgtcagatggcatttcaggactgcaggatttacaaagaagaatcaaagctattgaaaaggctatggtagataaggaaagccatcttactgccaatcaggaaggtaaacaatttggggacaggttcggtagtgagaagcctgaaatctctgaagcggggaacgaagttctgacgaaggacatcattctcgatcagatatcagagtgttcatcctatggggtaagcaggagagaaaccacagagcctgatgctcagatgatggagttatgggagaccactgaccaggatggcagcattgatttgacggttggcaaggcccagaaggcgactactgtaccgactgaccacagtcagactgaagctataaagaaacacaagaataaatatccctcttcagaatcattggttgagaaagaatatagcgttgacaaattagagatctctaagagattctccgagccccgtcaagaaggcaacaagagaaggattctagaaagacttgattctgatgtgcaaaagttgacaaaccttcaaattaccgtggaagacctgaagaagaaggtggacattactgagaagaccaaaaaggccaaaggtattgaatttggtactgtaaaagagcagctggatgaagccgaagaagccatcactaggttgtttgatgccaataacaatttgatgaagagtgtcgaagatgaatttgtgtctcctgatggagcttctgagatagtcccagatcacagtgggagtgtcagcagaaggagactgtccgaacaagcaaaaagagggtcagagaaaatcggtcgattgcagttggaggtacagaaactgcaatttcttctactgaagctggatggtgaaaaggaaagcaaagggtcaaccaggatcaaggagaggaaaacaagggttcttctgcgggactatctctattctggcactagaatgagcaacacaaccccaaagcgtaagaaagctcctttttgtgcatgcatgcccccaactaagggagattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KIP1

Protein Analysis

355

Amino Acids

40.0

Weight (kDa)

6.14

Isoelectric Point (pI)

55.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005688)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03080 AT1G03080 AT1G03080
fragaria_vesca	FvH4_2g23102 FvH4_2g23102 FvH4_2g23102
malus_domestica	MD03G1260100.v1.1 MD11G1280400.v1.1
prunus_persica	Prupe.3G033900_v2.0.a1 Prupe.8G236300_v2.0.a1 Prupe.8G236300_v2.0.a1 Prupe.8G236300_v2.0.a1
pyrus_communis	pycom03g20780 pycom11g24800 pycom11g24810
rosa_chinensis	RchiOBHm_Chr6g0290321
rosa_laevigata	RLG00000012227
rosa_multiflora	Rmu_co8491113.1_g000001 Rmu_sc0008900.1_g000002
rosa_roxburghii	Rroxscaffold_7G00177160
rosa_rugosa	Rorug06G0211700 Rorug06G0211800
rosa_samantha	Rh6AG322100 Rh6BG329400 Rh6CG335300 Rh6DG322300
rosa_wichuraiana	Rw6G027810 Rw6G027910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	209, 970
AclWI	GGATC	1 cut(s)	947
AcsI	RAATTY	2 cut(s)	656, 752
AcuI	CTGAAG	5 cut(s)	225, 432, 432, 626, 920
AfaI	GTAC	3 cut(s)	390, 664, 876
AfiI	CCNNNNNNNGG	3 cut(s)	705, 1057, 1058
AgsI	TTSAA	3 cut(s)	110, 587, 656
AhdI	GACNNNNNGTC	1 cut(s)	55
AjnI	CCWGG	2 cut(s)	336, 935
AluBI	AGCT	8 cut(s)	17, 24, 104, 416, 679, 773, 904, 1028
AluI	AGCT	8 cut(s)	17, 24, 104, 416, 679, 773, 904, 1028
Alw21I	GWGCWC	1 cut(s)	26
Alw26I	GTCTC	3 cut(s)	320, 765, 811
AlwI	GGATC	1 cut(s)	947
AlwNI	CAGNNNCTG	2 cut(s)	299, 883
AoxI	GGCC	2 cut(s)	369, 642
ApeKI	GCWGC	2 cut(s)	345, 676
ApoI	RAATTY	2 cut(s)	656, 752
ArsI	GACNNNNNNTTYG	2 cut(s)	827, 859
AspS9I	GGNCC	1 cut(s)	370
AsuHPI	GGTGA	1 cut(s)	923
BaeI	ACNNNNGTAYC	2 cut(s)	372, 405
BanII	GRGCYC	2 cut(s)	26, 516
BbsI	GAAGAC	2 cut(s)	606, 638
Bbv12I	GWGCWC	1 cut(s)	26
BbvI	GCAGC	2 cut(s)	357, 688
BccI	CCATC	8 cut(s)	29, 56, 144, 307, 335, 707, 761, 902
BciT130I	CCWGG	2 cut(s)	338, 937
BcoDI	GTCTC	3 cut(s)	320, 765, 811
BfaI	CTAG	3 cut(s)	545, 705, 993
BfmI	CTRYAG	1 cut(s)	77
BglI	GCCNNNNNGGC	1 cut(s)	377
BglII	AGATCT	1 cut(s)	492
BisI	GCNGC	2 cut(s)	346, 677
BlsI	GCNGC	2 cut(s)	347, 678
Bme1390I	CCNGG	2 cut(s)	338, 937
BmeRI	GACNNNNNGTC	1 cut(s)	55
BmgT120I	GGNCC	1 cut(s)	370
BmrFI	CCNGG	2 cut(s)	338, 937
BmsI	GCATC	2 cut(s)	292, 706
BoxI	GACNNNNGTC	1 cut(s)	402
BpiI	GAAGAC	2 cut(s)	606, 638
BsaBI	GATNNNNATC	1 cut(s)	39
BsaI	GGTCTC	1 cut(s)	320
BsaJI	CCNNGG	1 cut(s)	594
Bsc4I	CCNNNNNNNGG	3 cut(s)	705, 1057, 1058
Bse8I	GATNNNNATC	1 cut(s)	39
BseBI	CCWGG	2 cut(s)	338, 937
BseDI	CCNNGG	1 cut(s)	594
BseGI	GGATG	5 cut(s)	40, 263, 346, 688, 913
BseJI	GATNNNNATC	1 cut(s)	39
BseLI	CCNNNNNNNGG	3 cut(s)	705, 1057, 1058
BseMII	CTCAG	4 cut(s)	9, 320, 618, 768
BseXI	GCAGC	2 cut(s)	357, 688
Bsh1285I	CGRYCG	1 cut(s)	859
BshFI	GGCC	2 cut(s)	371, 644
BsiEI	CGRYCG	1 cut(s)	859
BsiHKAI	GWGCWC	1 cut(s)	26
BslFI	GGGAC	3 cut(s)	185, 770, 986
BslI	CCNNNNNNNGG	3 cut(s)	705, 1057, 1058
BsmAI	GTCTC	3 cut(s)	320, 765, 811
BsmFI	GGGAC	3 cut(s)	185, 770, 986
BsnI	GGCC	2 cut(s)	371, 644
Bso31I	GGTCTC	1 cut(s)	320
Bsp1286I	GDGCHC	2 cut(s)	26, 516
Bsp143I	GATC	4 cut(s)	244, 492, 790, 939
BspACI	CCGC	2 cut(s)	209, 970
BspANI	GGCC	2 cut(s)	371, 644
BspCNI	CTCAG	4 cut(s)	10, 319, 619, 769
BspMAI	CTGCAG	1 cut(s)	81
BspPI	GGATC	1 cut(s)	947
BspTNI	GGTCTC	1 cut(s)	320
BssECI	CCNNGG	1 cut(s)	594
BssMI	GATC	4 cut(s)	244, 492, 790, 939
Bst2UI	CCWGG	2 cut(s)	338, 937
Bst4CI	ACNGT	7 cut(s)	361, 388, 404, 595, 667, 797, 822
Bst6I	CTCTTC	2 cut(s)	451, 731
BstC8I	GCNNGC	3 cut(s)	15, 1042, 1046
BstDEI	CTNAG	6 cut(s)	18, 306, 498, 627, 777, 1056
BstDSI	CCRYGG	1 cut(s)	594
BstF5I	GGATG	5 cut(s)	40, 263, 346, 688, 913
BstKTI	GATC	4 cut(s)	247, 495, 793, 942
BstMAI	GTCTC	3 cut(s)	320, 765, 811
BstMBI	GATC	4 cut(s)	244, 492, 790, 939
BstMCI	CGRYCG	1 cut(s)	859
BstMWI	GCNNNNNNNGC	2 cut(s)	377, 695
BstNI	CCWGG	2 cut(s)	338, 937
BstNSI	RCATGY	2 cut(s)	1044, 1048
BstPAI	GACNNNNGTC	1 cut(s)	402
BstSCI	CCNGG	2 cut(s)	336, 935
BstSFI	CTRYAG	1 cut(s)	77
BstV1I	GCAGC	2 cut(s)	357, 688
BstV2I	GAAGAC	2 cut(s)	606, 638
BstX2I	RGATCY	1 cut(s)	492
BstYI	RGATCY	1 cut(s)	492
BsuRI	GGCC	2 cut(s)	371, 644
BtgI	CCRYGG	1 cut(s)	594
BtsCI	GGATG	5 cut(s)	40, 263, 346, 688, 913
BtsIMutI	CAGTG	2 cut(s)	330, 802
Cac8I	GCNNGC	3 cut(s)	15, 1042, 1046
CaiI	CAGNNNCTG	2 cut(s)	299, 883
Cfr13I	GGNCC	1 cut(s)	370
Csp6I	GTAC	3 cut(s)	389, 663, 875
CviAII	CATG	2 cut(s)	1041, 1045
CviQI	GTAC	3 cut(s)	389, 663, 875
DdeI	CTNAG	6 cut(s)	18, 306, 498, 627, 777, 1056
DpnI	GATC	4 cut(s)	246, 494, 792, 941
DpnII	GATC	4 cut(s)	244, 492, 790, 939
DriI	GACNNNNNGTC	1 cut(s)	55
Eam1104I	CTCTTC	2 cut(s)	451, 731
Eam1105I	GACNNNNNGTC	1 cut(s)	55
EarI	CTCTTC	2 cut(s)	451, 731
Ecl136II	GAGCTC	1 cut(s)	24
Eco24I	GRGCYC	2 cut(s)	26, 516
Eco31I	GGTCTC	1 cut(s)	320
Eco32I	GATATC	1 cut(s)	252
Eco53kI	GAGCTC	1 cut(s)	24
Eco57I	CTGAAG	5 cut(s)	225, 432, 432, 626, 920
EcoICRI	GAGCTC	1 cut(s)	24
EcoRII	CCWGG	2 cut(s)	336, 935
EcoRV	GATATC	1 cut(s)	252
EcoT22I	ATGCAT	1 cut(s)	1046
EcoT38I	GRGCYC	2 cut(s)	26, 516
FaeI	CATG	2 cut(s)	1044, 1048
FaiI	YATR	7 cut(s)	119, 270, 322, 419, 474, 1042, 1046
FaqI	GGGAC	3 cut(s)	185, 770, 986
FatI	CATG	2 cut(s)	1040, 1044
FauI	CCCGC	2 cut(s)	202, 963
Fnu4HI	GCNGC	2 cut(s)	346, 677
FokI	GGATG	5 cut(s)	47, 250, 353, 695, 920
FriOI	GRGCYC	2 cut(s)	26, 516
Fsp4HI	GCNGC	2 cut(s)	346, 677
FspBI	CTAG	3 cut(s)	545, 705, 993
GluI	GCNGC	2 cut(s)	346, 677
HaeIII	GGCC	2 cut(s)	371, 644
Hin1II	CATG	2 cut(s)	1044, 1048
HincII	GTYRAC	3 cut(s)	481, 576, 933
HindII	GTYRAC	3 cut(s)	481, 576, 933
HinfI	GANTC	5 cut(s)	96, 452, 504, 541, 557
HphI	GGTGA	1 cut(s)	923
Hpy166II	GTNNAC	5 cut(s)	161, 481, 576, 619, 933
Hpy188III	TCNNGA	6 cut(s)	72, 152, 242, 521, 545, 764
Hpy8I	GTNNAC	5 cut(s)	161, 481, 576, 619, 933
HpyAV	CCTTC	9 cut(s)	17, 149, 223, 370, 518, 531, 593, 607, 807
HpyCH4III	ACNGT	7 cut(s)	361, 388, 404, 595, 667, 797, 822
HpyCH4V	TGCA	7 cut(s)	13, 79, 568, 865, 886, 1040, 1044
HpyF10VI	GCNNNNNNNGC	2 cut(s)	377, 695
HpyF3I	CTNAG	6 cut(s)	18, 306, 498, 627, 777, 1056
Hsp92II	CATG	2 cut(s)	1044, 1048
Kzo9I	GATC	4 cut(s)	244, 492, 790, 939
LmnI	GCTCC	2 cut(s)	770, 1033
Lsp1109I	GCAGC	2 cut(s)	357, 688
LweI	GCATC	2 cut(s)	292, 706
MaeI	CTAG	3 cut(s)	545, 705, 993
MalI	GATC	4 cut(s)	246, 494, 792, 941
MboI	GATC	4 cut(s)	244, 492, 790, 939
MflI	RGATCY	1 cut(s)	492
MhlI	GDGCHC	2 cut(s)	26, 516
MluCI	AATT	8 cut(s)	45, 164, 485, 588, 656, 727, 752, 887
MmeI	TCCRAC	1 cut(s)	849
MnlI	CCTC	4 cut(s)	454, 833, 865, 942
Mph1103I	ATGCAT	1 cut(s)	1046
MslI	CAYNNNNRTG	1 cut(s)	995
MspA1I	CMGCKG	1 cut(s)	679
MspR9I	CCNGG	2 cut(s)	338, 937
MvaI	CCWGG	2 cut(s)	338, 937
MwoI	GCNNNNNNNGC	2 cut(s)	377, 695
NdeII	GATC	4 cut(s)	244, 492, 790, 939
NlaIII	CATG	2 cut(s)	1044, 1048
NsiI	ATGCAT	1 cut(s)	1046
NspI	RCATGY	2 cut(s)	1044, 1048
PaeI	GCATGC	2 cut(s)	1044, 1048
PfeI	GAWTC	5 cut(s)	96, 452, 504, 541, 557
PkrI	GCNGC	2 cut(s)	347, 678
PshAI	GACNNNNGTC	1 cut(s)	402
Psp124BI	GAGCTC	1 cut(s)	26
Psp6I	CCWGG	2 cut(s)	336, 935
PspGI	CCWGG	2 cut(s)	336, 935
PspPI	GGNCC	1 cut(s)	370
PstI	CTGCAG	1 cut(s)	81
PstNI	CAGNNNCTG	2 cut(s)	299, 883
PsuI	RGATCY	1 cut(s)	492
PvuII	CAGCTG	1 cut(s)	679
RsaI	GTAC	3 cut(s)	390, 664, 876
RsaNI	GTAC	3 cut(s)	389, 663, 875
RseI	CAYNNNNRTG	1 cut(s)	995
SacI	GAGCTC	1 cut(s)	26
SatI	GCNGC	2 cut(s)	346, 677
Sau3AI	GATC	4 cut(s)	244, 492, 790, 939
Sau96I	GGNCC	1 cut(s)	370
ScrFI	CCNGG	2 cut(s)	338, 937
SduI	GDGCHC	2 cut(s)	26, 516
SfaNI	GCATC	2 cut(s)	292, 706
SfcI	CTRYAG	1 cut(s)	77
SmiMI	CAYNNNNRTG	1 cut(s)	995
SphI	GCATGC	2 cut(s)	1044, 1048
Sse9I	AATT	8 cut(s)	45, 164, 485, 588, 656, 727, 752, 887
SsiI	CCGC	2 cut(s)	209, 970
SspMI	CTAG	3 cut(s)	545, 705, 993
SstI	GAGCTC	1 cut(s)	26
StyD4I	CCNGG	2 cut(s)	336, 935
TaaI	ACNGT	7 cut(s)	361, 388, 404, 595, 667, 797, 822
TaqI	TCGA	3 cut(s)	243, 744, 859
TaqII	GACCGA	1 cut(s)	845
TasI	AATT	8 cut(s)	45, 164, 485, 588, 656, 727, 752, 887
TfiI	GAWTC	5 cut(s)	96, 452, 504, 541, 557
TscAI	CASTG	2 cut(s)	337, 802
TseI	GCWGC	2 cut(s)	345, 676
TspDTI	ATGAA	4 cut(s)	252, 699, 749, 765
TspGWI	ACGGA	1 cut(s)	47
TspRI	CASTG	2 cut(s)	337, 802
XapI	RAATTY	2 cut(s)	656, 752
XbaI	TCTAGA	1 cut(s)	544
XceI	RCATGY	2 cut(s)	1044, 1048
XspI	CTAG	3 cut(s)	545, 705, 993
Zsp2I	ATGCAT	1 cut(s)	1046

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.