Rapid ALkalinization Factor (RALF)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G29780 |
| fragaria_vesca | FvH4_2g13590 |
| malus_domestica | MD09G1245200.v1.1 MD17G1237000.v1.1 |
| prunus_persica | Prupe.3G141000_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr6g0275191 RchiOBHm_Chr6g0275201 |
| rosa_laevigata | RLG00000013488 RLG00000013489 |
| rosa_multiflora | Rmu_ssc0000041.1_g000018 |
| rosa_roxburghii | Rroxscaffold_7G00193560 Rroxscaffold_7G00193570 |
| rosa_rugosa | Rorug06G0090000 Rorug06G0090100 |
| rosa_samantha | Rh6AG203300 Rh6AG203400 Rh6BG206100 Rh6BG206200 Rh6CG208500 Rh6CG208800 Rh6DG198600 |
| rosa_wichuraiana | Rw6G017640 Rw6G017650 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 348 |
| AccII | CGCG | 2 cut(s) | 97, 333 |
| AciI | CCGC | 1 cut(s) | 333 |
| AcsI | RAATTY | 1 cut(s) | 116 |
| AcvI | CACGTG | 1 cut(s) | 173 |
| AdeI | CACNNNGTG | 1 cut(s) | 173 |
| AfaI | GTAC | 1 cut(s) | 358 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 307 |
| AflIII | ACRYGT | 1 cut(s) | 87 |
| AgsI | TTSAA | 1 cut(s) | 121 |
| AluBI | AGCT | 1 cut(s) | 291 |
| AluI | AGCT | 1 cut(s) | 291 |
| Alw21I | GWGCWC | 1 cut(s) | 415 |
| Ama87I | CYCGRG | 1 cut(s) | 414 |
| AoxI | GGCC | 2 cut(s) | 45, 241 |
| ApeKI | GCWGC | 1 cut(s) | 390 |
| ApoI | RAATTY | 1 cut(s) | 116 |
| AspS9I | GGNCC | 1 cut(s) | 241 |
| AsuHPI | GGTGA | 1 cut(s) | 155 |
| AvaI | CYCGRG | 1 cut(s) | 414 |
| BauI | CACGAG | 1 cut(s) | 125 |
| BbrPI | CACGTG | 1 cut(s) | 173 |
| Bbv12I | GWGCWC | 1 cut(s) | 415 |
| BbvI | GCAGC | 1 cut(s) | 377 |
| BccI | CCATC | 2 cut(s) | 37, 140 |
| BisI | GCNGC | 2 cut(s) | 334, 391 |
| BlsI | GCNGC | 2 cut(s) | 335, 392 |
| BmeT110I | CYCGRG | 1 cut(s) | 414 |
| BmgT120I | GGNCC | 1 cut(s) | 241 |
| BmsI | GCATC | 1 cut(s) | 127 |
| BpuEI | CTTGAG | 2 cut(s) | 246, 287 |
| BsaAI | YACGTR | 1 cut(s) | 173 |
| BsaJI | CCNNGG | 1 cut(s) | 48 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 307 |
| Bse118I | RCCGGY | 1 cut(s) | 140 |
| Bse3DI | GCAATG | 1 cut(s) | 60 |
| BseDI | CCNNGG | 1 cut(s) | 48 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 307 |
| BseMI | GCAATG | 1 cut(s) | 60 |
| BseRI | GAGGAG | 3 cut(s) | 212, 227, 239 |
| BseXI | GCAGC | 1 cut(s) | 377 |
| BsgI | GTGCAG | 1 cut(s) | 376 |
| Bsh1236I | CGCG | 2 cut(s) | 97, 333 |
| BshFI | GGCC | 2 cut(s) | 47, 243 |
| BsiHKAI | GWGCWC | 1 cut(s) | 415 |
| BsiHKCI | CYCGRG | 1 cut(s) | 414 |
| BsiSI | CCGG | 1 cut(s) | 141 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 307 |
| BsnI | GGCC | 2 cut(s) | 47, 243 |
| BsoBI | CYCGRG | 1 cut(s) | 414 |
| Bsp1286I | GDGCHC | 1 cut(s) | 415 |
| Bsp143I | GATC | 1 cut(s) | 369 |
| BspACI | CCGC | 1 cut(s) | 333 |
| BspANI | GGCC | 2 cut(s) | 47, 243 |
| BspFNI | CGCG | 2 cut(s) | 97, 333 |
| BsrDI | GCAATG | 1 cut(s) | 60 |
| BsrFI | RCCGGY | 1 cut(s) | 140 |
| BssAI | RCCGGY | 1 cut(s) | 140 |
| BssECI | CCNNGG | 1 cut(s) | 48 |
| BssMI | GATC | 1 cut(s) | 369 |
| BssSI | CACGAG | 1 cut(s) | 125 |
| BssT1I | CCWWGG | 1 cut(s) | 48 |
| Bst2BI | CACGAG | 1 cut(s) | 125 |
| Bst4CI | ACNGT | 1 cut(s) | 253 |
| Bst6I | CTCTTC | 1 cut(s) | 216 |
| BstBAI | YACGTR | 1 cut(s) | 173 |
| BstC8I | GCNNGC | 2 cut(s) | 105, 245 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 305 |
| BstFNI | CGCG | 2 cut(s) | 97, 333 |
| BstKTI | GATC | 1 cut(s) | 372 |
| BstMBI | GATC | 1 cut(s) | 369 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 59, 192, 330 |
| BstNSI | RCATGY | 2 cut(s) | 91, 180 |
| BstUI | CGCG | 2 cut(s) | 97, 333 |
| BstV1I | GCAGC | 1 cut(s) | 377 |
| BsuRI | GGCC | 2 cut(s) | 47, 243 |
| Cac8I | GCNNGC | 2 cut(s) | 105, 245 |
| Cfr10I | RCCGGY | 1 cut(s) | 140 |
| Cfr13I | GGNCC | 1 cut(s) | 241 |
| CseI | GACGC | 1 cut(s) | 339 |
| Csp6I | GTAC | 1 cut(s) | 357 |
| CviAII | CATG | 4 cut(s) | 88, 134, 177, 321 |
| CviJI | RGCY | 8 cut(s) | 47, 62, 158, 186, 243, 291, 299, 390 |
| CviKI_1 | RGCY | 8 cut(s) | 47, 62, 158, 186, 243, 291, 299, 390 |
| CviQI | GTAC | 1 cut(s) | 357 |
| DpnI | GATC | 1 cut(s) | 371 |
| DpnII | GATC | 1 cut(s) | 369 |
| DraIII | CACNNNGTG | 1 cut(s) | 173 |
| Eam1104I | CTCTTC | 1 cut(s) | 216 |
| EarI | CTCTTC | 1 cut(s) | 216 |
| Eco130I | CCWWGG | 1 cut(s) | 48 |
| Eco72I | CACGTG | 1 cut(s) | 173 |
| Eco88I | CYCGRG | 1 cut(s) | 414 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 305 |
| EcoO109I | RGGNCCY | 1 cut(s) | 241 |
| EcoRI | GAATTC | 1 cut(s) | 116 |
| EcoT14I | CCWWGG | 1 cut(s) | 48 |
| ErhI | CCWWGG | 1 cut(s) | 48 |
| FaeI | CATG | 4 cut(s) | 91, 137, 180, 324 |
| FaiI | YATR | 8 cut(s) | 89, 135, 178, 285, 287, 294, 322, 348 |
| FatI | CATG | 4 cut(s) | 87, 133, 176, 320 |
| Fnu4HI | GCNGC | 2 cut(s) | 334, 391 |
| Fsp4HI | GCNGC | 2 cut(s) | 334, 391 |
| GluI | GCNGC | 2 cut(s) | 334, 391 |
| HaeIII | GGCC | 2 cut(s) | 47, 243 |
| HapII | CCGG | 1 cut(s) | 141 |
| HgaI | GACGC | 1 cut(s) | 339 |
| Hin1II | CATG | 4 cut(s) | 91, 137, 180, 324 |
| HinfI | GANTC | 1 cut(s) | 65 |
| HpaII | CCGG | 1 cut(s) | 141 |
| HphI | GGTGA | 1 cut(s) | 155 |
| Hpy188I | TCNGA | 1 cut(s) | 207 |
| Hpy188III | TCNNGA | 4 cut(s) | 127, 263, 304, 416 |
| Hpy99I | CGWCG | 1 cut(s) | 333 |
| HpyAV | CCTTC | 2 cut(s) | 263, 301 |
| HpyCH4III | ACNGT | 1 cut(s) | 253 |
| HpyCH4IV | ACGT | 2 cut(s) | 172, 385 |
| HpyCH4V | TGCA | 4 cut(s) | 176, 247, 324, 393 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 59, 192, 330 |
| HpySE526I | ACGT | 2 cut(s) | 172, 385 |
| Hsp92II | CATG | 4 cut(s) | 91, 137, 180, 324 |
| Kzo9I | GATC | 1 cut(s) | 369 |
| LpnPI | CCDG | 4 cut(s) | 154, 221, 257, 348 |
| Lsp1109I | GCAGC | 1 cut(s) | 377 |
| LweI | GCATC | 1 cut(s) | 127 |
| MaeII | ACGT | 2 cut(s) | 172, 385 |
| MaeIII | GTNAC | 1 cut(s) | 272 |
| MalI | GATC | 1 cut(s) | 371 |
| MboI | GATC | 1 cut(s) | 369 |
| MboII | GAAGA | 3 cut(s) | 230, 233, 379 |
| MhlI | GDGCHC | 1 cut(s) | 415 |
| MluCI | AATT | 4 cut(s) | 27, 116, 349, 406 |
| MslI | CAYNNNNRTG | 2 cut(s) | 86, 175 |
| MspI | CCGG | 1 cut(s) | 141 |
| MvnI | CGCG | 2 cut(s) | 97, 333 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 59, 192, 330 |
| NdeII | GATC | 1 cut(s) | 369 |
| NlaIII | CATG | 4 cut(s) | 91, 137, 180, 324 |
| NspI | RCATGY | 2 cut(s) | 91, 180 |
| PaeR7I | CTCGAG | 1 cut(s) | 414 |
| PciI | ACATGT | 1 cut(s) | 87 |
| PfeI | GAWTC | 1 cut(s) | 65 |
| PkrI | GCNGC | 2 cut(s) | 335, 392 |
| PmaCI | CACGTG | 1 cut(s) | 173 |
| PmlI | CACGTG | 1 cut(s) | 173 |
| Ppu21I | YACGTR | 1 cut(s) | 173 |
| PscI | ACATGT | 1 cut(s) | 87 |
| PsiI | TTATAA | 1 cut(s) | 348 |
| PspCI | CACGTG | 1 cut(s) | 173 |
| PspPI | GGNCC | 1 cut(s) | 241 |
| RsaI | GTAC | 1 cut(s) | 358 |
| RsaNI | GTAC | 1 cut(s) | 357 |
| RseI | CAYNNNNRTG | 2 cut(s) | 86, 175 |
| SatI | GCNGC | 2 cut(s) | 334, 391 |
| Sau3AI | GATC | 1 cut(s) | 369 |
| Sau96I | GGNCC | 1 cut(s) | 241 |
| SduI | GDGCHC | 1 cut(s) | 415 |
| SetI | ASST | 6 cut(s) | 175, 262, 274, 284, 293, 388 |
| SfaNI | GCATC | 1 cut(s) | 127 |
| Sfr274I | CTCGAG | 1 cut(s) | 414 |
| SlaI | CTCGAG | 1 cut(s) | 414 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 86, 175 |
| SmlI | CTYRAG | 3 cut(s) | 261, 302, 414 |
| SmoI | CTYRAG | 3 cut(s) | 261, 302, 414 |
| Sse9I | AATT | 4 cut(s) | 27, 116, 349, 406 |
| SsiI | CCGC | 1 cut(s) | 333 |
| SspI | AATATT | 1 cut(s) | 13 |
| StyI | CCWWGG | 1 cut(s) | 48 |
| TaaI | ACNGT | 1 cut(s) | 253 |
| TaiI | ACGT | 2 cut(s) | 175, 388 |
| TaqI | TCGA | 2 cut(s) | 328, 415 |
| TasI | AATT | 4 cut(s) | 27, 116, 349, 406 |
| TauI | GCSGC | 1 cut(s) | 336 |
| TfiI | GAWTC | 1 cut(s) | 65 |
| TseI | GCWGC | 1 cut(s) | 390 |
| TspDTI | ATGAA | 2 cut(s) | 282, 309 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 305 |
| XapI | RAATTY | 1 cut(s) | 116 |
| XceI | RCATGY | 2 cut(s) | 91, 180 |
| XhoI | CTCGAG | 1 cut(s) | 414 |