Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000041.1

Orthogroup ID

OG0008229

Physical Location & Seq

Genomic Coordinates Forward (+)

76946 .. 77293

Gene Structure 348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000041.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

atgggaatggtggttgactcaatatcatcaaccccacaacacttttcagttagaaccagcaatcatggaagggcaatgtcaactgcaccaccgcgtccagatattaagaatatcgattcttgcagtgatggcttttctggtgactgcctcagttattctgttgaagatgaagaagatggttctaatgatgataatcatagatatataagctatgaagccctaaaaaaaaatatggttccatgtggtcaacccggacattcgtattactattgtggtagatctgggcaggctaatccttataggcgtggctgcagtgtcatcacacgttgtgctagatctaatgattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0005102 GO:0005179 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005623 GO:0005911 GO:0007154 GO:0007165 GO:0007267 GO:0008150 GO:0009506 GO:0009966 GO:0009987 GO:0010469 GO:0010646 GO:0010769 GO:0019722 GO:0019932 GO:0022603 GO:0022604 GO:0023051 GO:0023052 GO:0030054 GO:0030545 GO:0035556 GO:0040008 GO:0042995 GO:0043900 GO:0044464 GO:0045595 GO:0048018 GO:0048046 GO:0048583 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051510 GO:0051716 GO:0055044 GO:0060284 GO:0065007 GO:0065009 GO:0080092 GO:0090406 GO:0098772 GO:0120025 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RALF

Protein Analysis

115

Amino Acids

12.66

Weight (kDa)

6.04

Isoelectric Point (pI)

47.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29780
fragaria_vesca	FvH4_2g13590
malus_domestica	MD09G1245200.v1.1 MD17G1237000.v1.1
prunus_persica	Prupe.3G141000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0275191 RchiOBHm_Chr6g0275201
rosa_laevigata	RLG00000013488 RLG00000013489
rosa_multiflora	Rmu_ssc0000041.1_g000018
rosa_roxburghii	Rroxscaffold_7G00193560 Rroxscaffold_7G00193570
rosa_rugosa	Rorug06G0090000 Rorug06G0090100
rosa_samantha	Rh6AG203300 Rh6AG203400 Rh6BG206100 Rh6BG206200 Rh6CG208500 Rh6CG208800 Rh6DG198600
rosa_wichuraiana	Rw6G017640 Rw6G017650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	94
AciI	CCGC	1 cut(s)	92
AdeI	CACNNNGTG	1 cut(s)	329
AflIII	ACRYGT	1 cut(s)	323
AgsI	TTSAA	1 cut(s)	164
AluBI	AGCT	1 cut(s)	210
AluI	AGCT	1 cut(s)	210
ApeKI	GCWGC	1 cut(s)	309
AsuC2I	CCSGG	1 cut(s)	252
AsuHPI	GGTGA	1 cut(s)	152
BbvI	GCAGC	1 cut(s)	296
BccI	CCATC	2 cut(s)	122, 170
BcnI	CCSGG	1 cut(s)	252
BfaI	CTAG	1 cut(s)	333
BfmI	CTRYAG	1 cut(s)	310
BglII	AGATCT	2 cut(s)	278, 335
BisI	GCNGC	1 cut(s)	310
BlsI	GCNGC	1 cut(s)	311
Bme1390I	CCNGG	1 cut(s)	252
BmiI	GGNNCC	1 cut(s)	237
BmrFI	CCNGG	1 cut(s)	252
BpuMI	CCSGG	1 cut(s)	252
Bsa29I	ATCGAT	1 cut(s)	114
BsaBI	GATNNNNATC	1 cut(s)	192
Bse3DI	GCAATG	1 cut(s)	81
Bse8I	GATNNNNATC	1 cut(s)	192
BseCI	ATCGAT	1 cut(s)	114
BseJI	GATNNNNATC	1 cut(s)	192
BseMI	GCAATG	1 cut(s)	81
BseMII	CTCAG	1 cut(s)	163
BseXI	GCAGC	1 cut(s)	296
BsgI	GTGCAG	1 cut(s)	69
Bsh1236I	CGCG	1 cut(s)	94
BshVI	ATCGAT	1 cut(s)	114
BsiSI	CCGG	1 cut(s)	252
Bsp143I	GATC	2 cut(s)	278, 335
BspACI	CCGC	1 cut(s)	92
BspCNI	CTCAG	1 cut(s)	162
BspDI	ATCGAT	1 cut(s)	114
BspFNI	CGCG	1 cut(s)	94
BspLI	GGNNCC	1 cut(s)	237
BspMAI	CTGCAG	1 cut(s)	314
BsrDI	GCAATG	1 cut(s)	81
BssMI	GATC	2 cut(s)	278, 335
BstC8I	GCNNGC	1 cut(s)	288
BstDEI	CTNAG	1 cut(s)	149
BstFNI	CGCG	1 cut(s)	94
BstKTI	GATC	2 cut(s)	281, 338
BstMBI	GATC	2 cut(s)	278, 335
BstMWI	GCNNNNNNNGC	1 cut(s)	129
BstSCI	CCNGG	1 cut(s)	250
BstSFI	CTRYAG	1 cut(s)	310
BstUI	CGCG	1 cut(s)	94
BstV1I	GCAGC	1 cut(s)	296
BstX2I	RGATCY	2 cut(s)	278, 335
BstYI	RGATCY	2 cut(s)	278, 335
Bsu15I	ATCGAT	1 cut(s)	114
BsuTUI	ATCGAT	1 cut(s)	114
BtsI	GCAGTG	2 cut(s)	130, 319
BtsIMutI	CAGTG	2 cut(s)	130, 319
Cac8I	GCNNGC	1 cut(s)	288
ClaI	ATCGAT	1 cut(s)	114
CseI	GACGC	1 cut(s)	83
CviAII	CATG	2 cut(s)	65, 240
CviJI	RGCY	5 cut(s)	132, 210, 218, 290, 309
CviKI_1	RGCY	5 cut(s)	132, 210, 218, 290, 309
DdeI	CTNAG	1 cut(s)	149
DpnI	GATC	2 cut(s)	280, 337
DpnII	GATC	2 cut(s)	278, 335
DraIII	CACNNNGTG	1 cut(s)	329
FaeI	CATG	2 cut(s)	68, 243
FaiI	YATR	8 cut(s)	66, 198, 204, 206, 213, 233, 241, 300
FatI	CATG	2 cut(s)	64, 239
Fnu4HI	GCNGC	1 cut(s)	310
Fsp4HI	GCNGC	1 cut(s)	310
FspBI	CTAG	1 cut(s)	333
GluI	GCNGC	1 cut(s)	310
HapII	CCGG	1 cut(s)	252
HgaI	GACGC	1 cut(s)	83
Hin1II	CATG	2 cut(s)	68, 243
HincII	GTYRAC	3 cut(s)	16, 81, 248
HindII	GTYRAC	3 cut(s)	16, 81, 248
HinfI	GANTC	2 cut(s)	17, 116
HpaII	CCGG	1 cut(s)	252
HphI	GGTGA	1 cut(s)	152
Hpy166II	GTNNAC	3 cut(s)	16, 81, 248
Hpy188III	TCNNGA	1 cut(s)	98
Hpy8I	GTNNAC	3 cut(s)	16, 81, 248
HpyAV	CCTTC	1 cut(s)	63
HpyCH4IV	ACGT	1 cut(s)	325
HpyCH4V	TGCA	3 cut(s)	86, 123, 312
HpyF10VI	GCNNNNNNNGC	1 cut(s)	129
HpyF3I	CTNAG	1 cut(s)	149
HpySE526I	ACGT	1 cut(s)	325
Hsp92II	CATG	2 cut(s)	68, 243
Kzo9I	GATC	2 cut(s)	278, 335
LpnPI	CCDG	6 cut(s)	70, 111, 123, 265, 267, 272
Lsp1109I	GCAGC	1 cut(s)	296
MaeI	CTAG	1 cut(s)	333
MaeII	ACGT	1 cut(s)	325
MaeIII	GTNAC	1 cut(s)	140
MalI	GATC	2 cut(s)	280, 337
MboI	GATC	2 cut(s)	278, 335
MboII	GAAGA	3 cut(s)	176, 182, 185
MflI	RGATCY	2 cut(s)	278, 335
MlyI	GAGTC	1 cut(s)	11
MnlI	CCTC	1 cut(s)	158
MseI	TTAA	2 cut(s)	105, 346
MspI	CCGG	1 cut(s)	252
MspR9I	CCNGG	1 cut(s)	252
MvnI	CGCG	1 cut(s)	94
MwoI	GCNNNNNNNGC	1 cut(s)	129
NciI	CCSGG	1 cut(s)	252
NdeII	GATC	2 cut(s)	278, 335
NlaIII	CATG	2 cut(s)	68, 243
NlaIV	GGNNCC	1 cut(s)	237
NmuCI	GTSAC	1 cut(s)	140
PfeI	GAWTC	1 cut(s)	116
PkrI	GCNGC	1 cut(s)	311
PleI	GAGTC	1 cut(s)	11
PpsI	GAGTC	1 cut(s)	11
PspN4I	GGNNCC	1 cut(s)	237
PstI	CTGCAG	1 cut(s)	314
PsuI	RGATCY	2 cut(s)	278, 335
SaqAI	TTAA	2 cut(s)	105, 346
SatI	GCNGC	1 cut(s)	310
Sau3AI	GATC	2 cut(s)	278, 335
SchI	GAGTC	1 cut(s)	11
ScrFI	CCNGG	1 cut(s)	252
SetI	ASST	2 cut(s)	212, 328
SfcI	CTRYAG	1 cut(s)	310
SsiI	CCGC	1 cut(s)	92
SspMI	CTAG	1 cut(s)	333
StyD4I	CCNGG	1 cut(s)	250
TaiI	ACGT	1 cut(s)	328
TaqI	TCGA	1 cut(s)	114
TfiI	GAWTC	1 cut(s)	116
Tru1I	TTAA	2 cut(s)	105, 346
Tru9I	TTAA	2 cut(s)	105, 346
TscAI	CASTG	2 cut(s)	130, 319
TseFI	GTSAC	1 cut(s)	140
TseI	GCWGC	1 cut(s)	309
Tsp45I	GTSAC	1 cut(s)	140
TspDTI	ATGAA	2 cut(s)	183, 228
TspRI	CASTG	2 cut(s)	130, 319
XspI	CTAG	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.