Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0008229

Physical Location & Seq

Genomic Coordinates Reverse (-)

35089794 .. 35090144

Gene Structure 351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00193560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGGAATGGTGGTTGACTCAATATCATCAACCCCACAACACTTCTCAGTTAGAACCACCAATCATGGAAGGGCAATGTCAACTGCACCACCGCGTCCAGATATTAAGAATATCGATTCTTGCAGCGATGGCTTTTCTGGTGACTGCCTCAGTTATTCTGTTGAAGATGAAGAAGATGGTTCTAATGATGATAGGCCTGCAAGATATATAAGCTATGAAGCCCTAAAAAGAGATATGGTTCCATGTGGTCAACGTGGACATTCGTATTATTATTGTGGTAGATCTGGGCAGGCTAATCCTTATAGGCGTGGCTGCAGTGTCATCACACGTTGTGCTAGATTTATTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0005102 GO:0005179 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005623 GO:0005911 GO:0007154 GO:0007165 GO:0007267 GO:0008150 GO:0009506 GO:0009966 GO:0009987 GO:0010469 GO:0010646 GO:0010769 GO:0019722 GO:0019932 GO:0022603 GO:0022604 GO:0023051 GO:0023052 GO:0030054 GO:0030545 GO:0035556 GO:0040008 GO:0042995 GO:0043900 GO:0044464 GO:0045595 GO:0048018 GO:0048046 GO:0048583 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051510 GO:0051716 GO:0055044 GO:0060284 GO:0065007 GO:0065009 GO:0080092 GO:0090406 GO:0098772 GO:0120025 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RALF

Protein Analysis

116

Amino Acids

12.9

Weight (kDa)

6.27

Isoelectric Point (pI)

45.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RALF	PF05498	67 - 113	1e-20	Rapid ALkalinization Factor (RALF)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0008229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29780
fragaria_vesca	FvH4_2g13590
malus_domestica	MD09G1245200.v1.1 MD17G1237000.v1.1
prunus_persica	Prupe.3G141000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0275191 RchiOBHm_Chr6g0275201
rosa_laevigata	RLG00000013488 RLG00000013489
rosa_multiflora	Rmu_ssc0000041.1_g000018
rosa_roxburghii	Rroxscaffold_7G00193560 Rroxscaffold_7G00193570
rosa_rugosa	Rorug06G0090000 Rorug06G0090100
rosa_samantha	Rh6AG203300 Rh6AG203400 Rh6BG206100 Rh6BG206200 Rh6CG208500 Rh6CG208800 Rh6DG198600
rosa_wichuraiana	Rw6G017640 Rw6G017650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	94
AciI	CCGC	1 cut(s)	92
AdeI	CACNNNGTG	1 cut(s)	332
AflIII	ACRYGT	1 cut(s)	326
AgsI	TTSAA	1 cut(s)	164
AluBI	AGCT	1 cut(s)	213
AluI	AGCT	1 cut(s)	213
AoxI	GGCC	1 cut(s)	194
ApeKI	GCWGC	2 cut(s)	123, 312
AsuHPI	GGTGA	1 cut(s)	152
BbvI	GCAGC	2 cut(s)	135, 299
BccI	CCATC	2 cut(s)	122, 170
BfaI	CTAG	1 cut(s)	336
BfmI	CTRYAG	1 cut(s)	313
BglII	AGATCT	1 cut(s)	281
BisI	GCNGC	2 cut(s)	124, 313
BlsI	GCNGC	2 cut(s)	125, 314
BmiI	GGNNCC	1 cut(s)	240
Bsa29I	ATCGAT	1 cut(s)	114
Bse3DI	GCAATG	1 cut(s)	81
BseCI	ATCGAT	1 cut(s)	114
BseMI	GCAATG	1 cut(s)	81
BseMII	CTCAG	2 cut(s)	60, 163
BseXI	GCAGC	2 cut(s)	135, 299
BsgI	GTGCAG	1 cut(s)	69
Bsh1236I	CGCG	1 cut(s)	94
BshFI	GGCC	1 cut(s)	196
BshVI	ATCGAT	1 cut(s)	114
BsnI	GGCC	1 cut(s)	196
Bsp143I	GATC	1 cut(s)	281
BspACI	CCGC	1 cut(s)	92
BspANI	GGCC	1 cut(s)	196
BspCNI	CTCAG	2 cut(s)	59, 162
BspDI	ATCGAT	1 cut(s)	114
BspFNI	CGCG	1 cut(s)	94
BspLI	GGNNCC	1 cut(s)	240
BspMAI	CTGCAG	1 cut(s)	317
BsrDI	GCAATG	1 cut(s)	81
BssMI	GATC	1 cut(s)	281
BstC8I	GCNNGC	2 cut(s)	198, 291
BstDEI	CTNAG	2 cut(s)	46, 149
BstFNI	CGCG	1 cut(s)	94
BstKTI	GATC	1 cut(s)	284
BstMBI	GATC	1 cut(s)	281
BstMWI	GCNNNNNNNGC	1 cut(s)	129
BstSFI	CTRYAG	1 cut(s)	313
BstUI	CGCG	1 cut(s)	94
BstV1I	GCAGC	2 cut(s)	135, 299
BstX2I	RGATCY	1 cut(s)	281
BstYI	RGATCY	1 cut(s)	281
Bsu15I	ATCGAT	1 cut(s)	114
BsuRI	GGCC	1 cut(s)	196
BsuTUI	ATCGAT	1 cut(s)	114
BtgZI	GCGATG	1 cut(s)	141
BtsI	GCAGTG	1 cut(s)	322
BtsIMutI	CAGTG	1 cut(s)	322
Cac8I	GCNNGC	2 cut(s)	198, 291
ClaI	ATCGAT	1 cut(s)	114
CseI	GACGC	1 cut(s)	83
CviAII	CATG	2 cut(s)	65, 243
CviJI	RGCY	6 cut(s)	132, 196, 213, 221, 293, 312
CviKI_1	RGCY	6 cut(s)	132, 196, 213, 221, 293, 312
DdeI	CTNAG	2 cut(s)	46, 149
DpnI	GATC	1 cut(s)	283
DpnII	GATC	1 cut(s)	281
DraIII	CACNNNGTG	1 cut(s)	332
Eco147I	AGGCCT	1 cut(s)	196
FaeI	CATG	2 cut(s)	68, 246
FaiI	YATR	7 cut(s)	66, 207, 209, 216, 236, 244, 303
FatI	CATG	2 cut(s)	64, 242
Fnu4HI	GCNGC	2 cut(s)	124, 313
Fsp4HI	GCNGC	2 cut(s)	124, 313
FspBI	CTAG	1 cut(s)	336
GluI	GCNGC	2 cut(s)	124, 313
HaeIII	GGCC	1 cut(s)	196
HgaI	GACGC	1 cut(s)	83
Hin1II	CATG	2 cut(s)	68, 246
HincII	GTYRAC	3 cut(s)	16, 81, 251
HindII	GTYRAC	3 cut(s)	16, 81, 251
HinfI	GANTC	2 cut(s)	17, 116
HphI	GGTGA	1 cut(s)	152
Hpy166II	GTNNAC	4 cut(s)	16, 81, 251, 257
Hpy188III	TCNNGA	1 cut(s)	98
Hpy8I	GTNNAC	4 cut(s)	16, 81, 251, 257
HpyAV	CCTTC	1 cut(s)	63
HpyCH4IV	ACGT	2 cut(s)	253, 328
HpyCH4V	TGCA	4 cut(s)	86, 123, 200, 315
HpyF10VI	GCNNNNNNNGC	1 cut(s)	129
HpyF3I	CTNAG	2 cut(s)	46, 149
HpySE526I	ACGT	2 cut(s)	253, 328
Hsp92II	CATG	2 cut(s)	68, 246
Kzo9I	GATC	1 cut(s)	281
LpnPI	CCDG	5 cut(s)	111, 123, 210, 270, 275
Lsp1109I	GCAGC	2 cut(s)	135, 299
MaeI	CTAG	1 cut(s)	336
MaeII	ACGT	2 cut(s)	253, 328
MaeIII	GTNAC	1 cut(s)	140
MalI	GATC	1 cut(s)	283
MboI	GATC	1 cut(s)	281
MboII	GAAGA	3 cut(s)	176, 182, 185
MflI	RGATCY	1 cut(s)	281
MlyI	GAGTC	1 cut(s)	11
MnlI	CCTC	1 cut(s)	158
MseI	TTAA	2 cut(s)	105, 349
MvnI	CGCG	1 cut(s)	94
MwoI	GCNNNNNNNGC	1 cut(s)	129
NdeII	GATC	1 cut(s)	281
NlaIII	CATG	2 cut(s)	68, 246
NlaIV	GGNNCC	1 cut(s)	240
NmuCI	GTSAC	1 cut(s)	140
PceI	AGGCCT	1 cut(s)	196
PfeI	GAWTC	1 cut(s)	116
PkrI	GCNGC	2 cut(s)	125, 314
PleI	GAGTC	1 cut(s)	11
PpsI	GAGTC	1 cut(s)	11
PspN4I	GGNNCC	1 cut(s)	240
PstI	CTGCAG	1 cut(s)	317
PsuI	RGATCY	1 cut(s)	281
SaqAI	TTAA	2 cut(s)	105, 349
SatI	GCNGC	2 cut(s)	124, 313
Sau3AI	GATC	1 cut(s)	281
SchI	GAGTC	1 cut(s)	11
SetI	ASST	3 cut(s)	215, 256, 331
SfcI	CTRYAG	1 cut(s)	313
SseBI	AGGCCT	1 cut(s)	196
SsiI	CCGC	1 cut(s)	92
SspMI	CTAG	1 cut(s)	336
StuI	AGGCCT	1 cut(s)	196
TaiI	ACGT	2 cut(s)	256, 331
TaqI	TCGA	1 cut(s)	114
TfiI	GAWTC	1 cut(s)	116
Tru1I	TTAA	2 cut(s)	105, 349
Tru9I	TTAA	2 cut(s)	105, 349
TscAI	CASTG	1 cut(s)	322
TseFI	GTSAC	1 cut(s)	140
TseI	GCWGC	2 cut(s)	123, 312
Tsp45I	GTSAC	1 cut(s)	140
TspDTI	ATGAA	2 cut(s)	183, 231
TspRI	CASTG	1 cut(s)	322
XspI	CTAG	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.