Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0008229

Physical Location & Seq

Genomic Coordinates Reverse (-)

32280697 .. 32281068

Gene Structure 372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013489

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGCCTTGGCAATGACAATGATAGCTGACTCGTCATCAAACGCAAATAATTTCTCAACCGACATGCGGAAAGTTGGAGCAGTGCCTGCACCAAAACGTCGAGATGATAACAATTTCTCATCATGTAACGGCTTCTTTGGCGACTGCCACAGTTATTCGGATGATGATTTTATGACTAGTGATAAAAGAAGGACAAGAAGAAGACATCTTTATGAAGCCAGAAGGTATATAAGTTATAGAGCCCTACTGAAAGATCGTGTTCCCTGTGGTCAACGAGGTAGCTCGTATTACAATTGTGGTATTTCTGGGCAAGCTAATCCTTATAGGCGTGGTTGTAGTGTCATCACACGTTGTGCCAGAAGTAGTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0005102 GO:0005179 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005623 GO:0005911 GO:0007154 GO:0007165 GO:0007267 GO:0008150 GO:0009506 GO:0009966 GO:0009987 GO:0010469 GO:0010646 GO:0010769 GO:0019722 GO:0019932 GO:0022603 GO:0022604 GO:0023051 GO:0023052 GO:0030054 GO:0030545 GO:0035556 GO:0040008 GO:0042995 GO:0043900 GO:0044464 GO:0045595 GO:0048018 GO:0048046 GO:0048583 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051510 GO:0051716 GO:0055044 GO:0060284 GO:0065007 GO:0065009 GO:0080092 GO:0090406 GO:0098772 GO:0120025 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RALF

Protein Analysis

124

Amino Acids

13.93

Weight (kDa)

9.6

Isoelectric Point (pI)

54.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RALF	PF05498	65 - 120	1.7e-22	Rapid ALkalinization Factor (RALF)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29780
fragaria_vesca	FvH4_2g13590
malus_domestica	MD09G1245200.v1.1 MD17G1237000.v1.1
prunus_persica	Prupe.3G141000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0275191 RchiOBHm_Chr6g0275201
rosa_laevigata	RLG00000013488 RLG00000013489
rosa_multiflora	Rmu_ssc0000041.1_g000018
rosa_roxburghii	Rroxscaffold_7G00193560 Rroxscaffold_7G00193570
rosa_rugosa	Rorug06G0090000 Rorug06G0090100
rosa_samantha	Rh6AG203300 Rh6AG203400 Rh6BG206100 Rh6BG206200 Rh6CG208500 Rh6CG208800 Rh6DG198600
rosa_wichuraiana	Rw6G017640 Rw6G017650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	67
AdeI	CACNNNGTG	1 cut(s)	353
AfiI	CCNNNNNNNGG	1 cut(s)	66
AflIII	ACRYGT	1 cut(s)	347
AhlI	ACTAGT	1 cut(s)	176
AluBI	AGCT	3 cut(s)	26, 282, 314
AluI	AGCT	3 cut(s)	26, 282, 314
AlwNI	CAGNNNCTG	1 cut(s)	86
AoxI	GGCC	1 cut(s)	3
BanII	GRGCYC	1 cut(s)	244
BbsI	GAAGAC	1 cut(s)	208
BceAI	ACGGC	1 cut(s)	145
BcuI	ACTAGT	1 cut(s)	176
BfaI	CTAG	1 cut(s)	177
BpiI	GAAGAC	1 cut(s)	208
BsaJI	CCNNGG	1 cut(s)	6
Bsc4I	CCNNNNNNNGG	1 cut(s)	66
Bse3DI	GCAATG	1 cut(s)	18
BseDI	CCNNGG	1 cut(s)	6
BseGI	GGATG	1 cut(s)	166
BseLI	CCNNNNNNNGG	1 cut(s)	66
BseMI	GCAATG	1 cut(s)	18
BsgI	GTGCAG	1 cut(s)	72
BshFI	GGCC	1 cut(s)	5
BslI	CCNNNNNNNGG	1 cut(s)	66
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	244
Bsp143I	GATC	1 cut(s)	253
BspACI	CCGC	1 cut(s)	67
BspANI	GGCC	1 cut(s)	5
BsrDI	GCAATG	1 cut(s)	18
BssECI	CCNNGG	1 cut(s)	6
BssMI	GATC	1 cut(s)	253
BssT1I	CCWWGG	1 cut(s)	6
Bst4CI	ACNGT	1 cut(s)	152
BstAPI	GCANNNNNTGC	1 cut(s)	86
BstC8I	GCNNGC	2 cut(s)	87, 312
BstF5I	GGATG	1 cut(s)	166
BstKTI	GATC	1 cut(s)	256
BstMBI	GATC	1 cut(s)	253
BstMWI	GCNNNNNNNGC	2 cut(s)	86, 138
BstNSI	RCATGY	1 cut(s)	67
BstV2I	GAAGAC	1 cut(s)	208
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	166
BtsI	GCAGTG	1 cut(s)	87
BtsIMutI	CAGTG	1 cut(s)	87
Cac8I	GCNNGC	2 cut(s)	87, 312
CaiI	CAGNNNCTG	1 cut(s)	86
CviAII	CATG	2 cut(s)	64, 123
CviJI	RGCY	7 cut(s)	5, 26, 132, 218, 242, 282, 314
CviKI_1	RGCY	7 cut(s)	5, 26, 132, 218, 242, 282, 314
DpnI	GATC	1 cut(s)	255
DpnII	GATC	1 cut(s)	253
DraIII	CACNNNGTG	1 cut(s)	353
Eco130I	CCWWGG	1 cut(s)	6
Eco24I	GRGCYC	1 cut(s)	244
EcoT14I	CCWWGG	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	244
ErhI	CCWWGG	1 cut(s)	6
FaeI	CATG	2 cut(s)	67, 126
FaiI	YATR	8 cut(s)	65, 124, 173, 213, 228, 230, 237, 324
FatI	CATG	2 cut(s)	63, 122
FokI	GGATG	1 cut(s)	173
FriOI	GRGCYC	1 cut(s)	244
FspBI	CTAG	1 cut(s)	177
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	67, 126
HincII	GTYRAC	1 cut(s)	272
HindII	GTYRAC	1 cut(s)	272
HinfI	GANTC	1 cut(s)	29
Hpy166II	GTNNAC	1 cut(s)	272
Hpy188I	TCNGA	1 cut(s)	160
Hpy188III	TCNNGA	1 cut(s)	101
Hpy8I	GTNNAC	1 cut(s)	272
Hpy99I	CGWCG	1 cut(s)	102
HpyAV	CCTTC	2 cut(s)	183, 216
HpyCH4III	ACNGT	1 cut(s)	152
HpyCH4IV	ACGT	2 cut(s)	97, 349
HpyCH4V	TGCA	1 cut(s)	89
HpyF10VI	GCNNNNNNNGC	2 cut(s)	86, 138
HpySE526I	ACGT	2 cut(s)	97, 349
Hsp92II	CATG	2 cut(s)	67, 126
Kzo9I	GATC	1 cut(s)	253
LmnI	GCTCC	1 cut(s)	77
LpnPI	CCDG	4 cut(s)	99, 232, 277, 291
MaeI	CTAG	1 cut(s)	177
MaeII	ACGT	2 cut(s)	97, 349
MaeIII	GTNAC	1 cut(s)	125
MalI	GATC	1 cut(s)	255
MboI	GATC	1 cut(s)	253
MboII	GAAGA	2 cut(s)	210, 213
MfeI	CAATTG	1 cut(s)	292
MhlI	GDGCHC	1 cut(s)	244
MluCI	AATT	3 cut(s)	49, 112, 292
MlyI	GAGTC	1 cut(s)	23
MmeI	TCCRAC	1 cut(s)	55
MnlI	CCTC	1 cut(s)	269
MslI	CAYNNNNRTG	1 cut(s)	210
MunI	CAATTG	1 cut(s)	292
MwoI	GCNNNNNNNGC	2 cut(s)	86, 138
NdeII	GATC	1 cut(s)	253
NlaIII	CATG	2 cut(s)	67, 126
NspI	RCATGY	1 cut(s)	67
PleI	GAGTC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	23
PstNI	CAGNNNCTG	1 cut(s)	86
RseI	CAYNNNNRTG	1 cut(s)	210
Sau3AI	GATC	1 cut(s)	253
SchI	GAGTC	1 cut(s)	23
SduI	GDGCHC	1 cut(s)	244
SetI	ASST	7 cut(s)	28, 100, 227, 280, 284, 316, 352
SmiMI	CAYNNNNRTG	1 cut(s)	210
SpeI	ACTAGT	1 cut(s)	176
Sse9I	AATT	3 cut(s)	49, 112, 292
SsiI	CCGC	1 cut(s)	67
SspMI	CTAG	1 cut(s)	177
StyI	CCWWGG	1 cut(s)	6
TaaI	ACNGT	1 cut(s)	152
TaiI	ACGT	2 cut(s)	100, 352
TaqI	TCGA	1 cut(s)	100
TasI	AATT	3 cut(s)	49, 112, 292
TscAI	CASTG	1 cut(s)	87
TspDTI	ATGAA	1 cut(s)	228
TspRI	CASTG	1 cut(s)	87
XceI	RCATGY	1 cut(s)	67
XspI	CTAG	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.