Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0008229

Physical Location & Seq

Genomic Coordinates Reverse (-)

11970683 .. 11972429

Gene Structure 1747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0090100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGTGCTTAACTTTTGGTTGGCAGGGTCTTTCTAAAACATTCTGCATTAAGCATTTGCCAAAGCAAGACACAATGTTTGTTTTAGAAGATGAAAACGGTGAGAAGTTCGAAACGAAGTATCTTGTCAAAAAGATAGGACTGAGTGGTGGATGGAGAGGTTTTTCAATTGCTCACAAGTTGCTGGCTGGAGATGTCTTAGTTTTCCATCTAGTCACAGAATCTAAGTTCAAGGTTTATGTTATTAGATCAAATGGCTTAGGTGAAGTGGAATGCGCCCTTGGCCTTGTCCAATTAGATGCTGGCATTCGACCAGTAGATTCTGCAGATACTAATGCATGTGAAAGGGCAGAAAATGAGAATAGGGAACCTACATCAGTGGAAAATCCTGATGGAGTTATTCAAAGGAACAAAACCGCAGCGTGTAATAGTAAATGTGGTACGGTGTCAGATCTGTTTGAAGATGACACTGAAGATGCTAGTTGTGAAGTTTTGGAAGGAATCAAGCTTTCAGAATCTATTGTCCCTTTTGATGAAGTGTGCGGCATAGAGAACTTCAATGTCATCTACAATGGTTTAATCATAAATCCCCTGTTTCCGAAACCCCTTCTGACCAAGTACTATGAGCTCTGCTGCAGTCAAAACTCTTTCCTTCATGAGCACCTTCTTGAGGGTCTTAACTACAAACTGGTAGCTGGAATAATTTCCGAAACAACCAATATTGCAAATGCCATTAAAGCCTGCAAGATCACTACCTTGGAGAGTAGTGTCTCAACTTGGGATAAGACTTTGCAAGCCGGCGAGATGTTAGGCATGAATGTCAGCTTCCTGCGTGAGCAACTTGAACAGCTTGCGAGTCTTGCTTCAAAATTAAAAAGGTGTGAAGAGGCTAGACTGGAAAGGGAGCAAGAAGAACAAAAGATGAGAACCAGGTTGGCAAAGCTTTTAGAAGTAAAAGAGAAGAAGGATAGGCTACAGTCTCGGATTTCAGTGAAGCTTATGTCCAGGTTCAAAGAAGTAATCGATGCTCCTTGGTATGCAAAGTTGGAGATGTGTGGCAATGCATTGGGACTCTCGGCTGAAGAGTTGTCAACTATAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0005102 GO:0005179 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005623 GO:0005911 GO:0007154 GO:0007165 GO:0007267 GO:0008150 GO:0009506 GO:0009966 GO:0009987 GO:0010469 GO:0010646 GO:0010769 GO:0019722 GO:0019932 GO:0022603 GO:0022604 GO:0023051 GO:0023052 GO:0030054 GO:0030545 GO:0035556 GO:0040008 GO:0042995 GO:0043900 GO:0044464 GO:0045595 GO:0048018 GO:0048046 GO:0048583 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051510 GO:0051716 GO:0055044 GO:0060284 GO:0065007 GO:0065009 GO:0080092 GO:0090406 GO:0098772 GO:0120025 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RALF

Protein Analysis

366

Amino Acids

40.94

Weight (kDa)

5.28

Isoelectric Point (pI)

35.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	8 - 83	3.5e-12	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29780
fragaria_vesca	FvH4_2g13590
malus_domestica	MD09G1245200.v1.1 MD17G1237000.v1.1
prunus_persica	Prupe.3G141000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0275191 RchiOBHm_Chr6g0275201
rosa_laevigata	RLG00000013488 RLG00000013489
rosa_multiflora	Rmu_ssc0000041.1_g000018
rosa_roxburghii	Rroxscaffold_7G00193560 Rroxscaffold_7G00193570
rosa_rugosa	Rorug06G0090000 Rorug06G0090100
rosa_samantha	Rh6AG203300 Rh6AG203400 Rh6BG206100 Rh6BG206200 Rh6CG208500 Rh6CG208800 Rh6DG198600
rosa_wichuraiana	Rw6G017640 Rw6G017650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	414, 540
AcuI	CTGAAG	2 cut(s)	489, 1098
AfaI	GTAC	2 cut(s)	439, 617
AfiI	CCNNNNNNNGG	1 cut(s)	667
AgsI	TTSAA	8 cut(s)	165, 229, 401, 458, 556, 842, 864, 1009
AjnI	CCWGG	2 cut(s)	926, 1001
AjuI	GAANNNNNNNTTGG	2 cut(s)	261, 293
AluBI	AGCT	7 cut(s)	505, 625, 692, 822, 847, 940, 994
AluI	AGCT	7 cut(s)	505, 625, 692, 822, 847, 940, 994
Alw21I	GWGCWC	2 cut(s)	627, 660
Alw26I	GTCTC	2 cut(s)	772, 981
AoxI	GGCC	1 cut(s)	280
ApeKI	GCWGC	2 cut(s)	416, 630
ArsI	GACNNNNNNTTYG	2 cut(s)	59, 91
Asp700I	GAANNNNTTC	1 cut(s)	700
AspLEI	GCGC	1 cut(s)	275
AsuHPI	GGTGA	2 cut(s)	110, 272
AsuII	TTCGAA	1 cut(s)	108
BanII	GRGCYC	1 cut(s)	627
Bbv12I	GWGCWC	2 cut(s)	627, 660
BbvI	GCAGC	2 cut(s)	428, 617
BccI	CCATC	3 cut(s)	144, 213, 383
BciT130I	CCWGG	2 cut(s)	928, 1003
BcoDI	GTCTC	2 cut(s)	772, 981
BfaI	CTAG	3 cut(s)	209, 477, 888
BfmI	CTRYAG	3 cut(s)	321, 631, 971
BglII	AGATCT	1 cut(s)	448
BisI	GCNGC	3 cut(s)	417, 541, 631
BlsI	GCNGC	3 cut(s)	418, 542, 632
BmcAI	AGTACT	1 cut(s)	617
Bme1390I	CCNGG	2 cut(s)	928, 1003
BmiI	GGNNCC	1 cut(s)	366
BmrFI	CCNGG	2 cut(s)	928, 1003
BmsI	GCATC	3 cut(s)	286, 463, 1012
BpmI	CTGGAG	1 cut(s)	207
Bpu10I	CCTNAGC	1 cut(s)	256
Bpu14I	TTCGAA	1 cut(s)	108
BpuEI	CTTGAG	1 cut(s)	686
Bsa29I	ATCGAT	1 cut(s)	1020
BsaJI	CCNNGG	3 cut(s)	277, 753, 1028
Bsc4I	CCNNNNNNNGG	1 cut(s)	667
Bse118I	RCCGGY	1 cut(s)	794
Bse1I	ACTGG	3 cut(s)	311, 690, 897
Bse3DI	GCAATG	1 cut(s)	1063
BseBI	CCWGG	2 cut(s)	928, 1003
BseCI	ATCGAT	1 cut(s)	1020
BseDI	CCNNGG	3 cut(s)	277, 753, 1028
BseGI	GGATG	1 cut(s)	155
BseLI	CCNNNNNNNGG	1 cut(s)	667
BseMI	GCAATG	1 cut(s)	1063
BseMII	CTCAG	1 cut(s)	131
BseNI	ACTGG	3 cut(s)	311, 690, 897
BseXI	GCAGC	2 cut(s)	428, 617
BshFI	GGCC	1 cut(s)	282
BshVI	ATCGAT	1 cut(s)	1020
BsiHKAI	GWGCWC	2 cut(s)	627, 660
BsiSI	CCGG	1 cut(s)	795
BslFI	GGGAC	2 cut(s)	506, 1080
BslI	CCNNNNNNNGG	1 cut(s)	667
BsmAI	GTCTC	2 cut(s)	772, 981
BsmFI	GGGAC	2 cut(s)	506, 1080
BsmI	GAATGC	2 cut(s)	275, 303
BsnI	GGCC	1 cut(s)	282
Bsp119I	TTCGAA	1 cut(s)	108
Bsp1286I	GDGCHC	2 cut(s)	627, 660
Bsp143I	GATC	3 cut(s)	245, 448, 744
BspACI	CCGC	2 cut(s)	414, 540
BspANI	GGCC	1 cut(s)	282
BspCNI	CTCAG	1 cut(s)	132
BspDI	ATCGAT	1 cut(s)	1020
BspHI	TCATGA	1 cut(s)	652
BspLI	GGNNCC	1 cut(s)	366
BspMAI	CTGCAG	2 cut(s)	325, 635
BspT104I	TTCGAA	1 cut(s)	108
BsrDI	GCAATG	1 cut(s)	1063
BsrFI	RCCGGY	1 cut(s)	794
BsrI	ACTGG	3 cut(s)	311, 690, 897
BssAI	RCCGGY	1 cut(s)	794
BssECI	CCNNGG	3 cut(s)	277, 753, 1028
BssMI	GATC	3 cut(s)	245, 448, 744
BssT1I	CCWWGG	3 cut(s)	277, 753, 1028
Bst2UI	CCWGG	2 cut(s)	928, 1003
Bst4CI	ACNGT	3 cut(s)	98, 442, 975
Bst6I	CTCTTC	2 cut(s)	876, 1074
BstBI	TTCGAA	1 cut(s)	108
BstC8I	GCNNGC	6 cut(s)	183, 301, 739, 792, 796, 849
BstDEI	CTNAG	4 cut(s)	140, 196, 222, 256
BstENI	CCTNNNNNAGG	1 cut(s)	665
BstF5I	GGATG	1 cut(s)	155
BstHHI	GCGC	1 cut(s)	275
BstKTI	GATC	3 cut(s)	248, 451, 747
BstMAI	GTCTC	2 cut(s)	772, 981
BstMBI	GATC	3 cut(s)	245, 448, 744
BstMWI	GCNNNNNNNGC	3 cut(s)	279, 734, 857
BstNI	CCWGG	2 cut(s)	928, 1003
BstNSI	RCATGY	1 cut(s)	339
BstSCI	CCNGG	2 cut(s)	926, 1001
BstSFI	CTRYAG	3 cut(s)	321, 631, 971
BstV1I	GCAGC	2 cut(s)	428, 617
BstX2I	RGATCY	1 cut(s)	448
BstYI	RGATCY	1 cut(s)	448
Bsu15I	ATCGAT	1 cut(s)	1020
BsuRI	GGCC	1 cut(s)	282
BsuTUI	ATCGAT	1 cut(s)	1020
BtsCI	GGATG	1 cut(s)	155
BtsIMutI	CAGTG	3 cut(s)	381, 465, 993
Cac8I	GCNNGC	6 cut(s)	183, 301, 739, 792, 796, 849
CciI	TCATGA	1 cut(s)	652
CfoI	GCGC	1 cut(s)	275
Cfr10I	RCCGGY	1 cut(s)	794
ClaI	ATCGAT	1 cut(s)	1020
CsiI	ACCWGGT	1 cut(s)	926
Csp6I	GTAC	2 cut(s)	438, 616
CviAII	CATG	4 cut(s)	336, 653, 811, 1098
CviQI	GTAC	2 cut(s)	438, 616
DdeI	CTNAG	4 cut(s)	140, 196, 222, 256
DpnI	GATC	3 cut(s)	247, 450, 746
DpnII	GATC	3 cut(s)	245, 448, 744
Eam1104I	CTCTTC	2 cut(s)	876, 1074
EarI	CTCTTC	2 cut(s)	876, 1074
Ecl136II	GAGCTC	1 cut(s)	625
Eco130I	CCWWGG	3 cut(s)	277, 753, 1028
Eco24I	GRGCYC	1 cut(s)	627
Eco53kI	GAGCTC	1 cut(s)	625
Eco57I	CTGAAG	2 cut(s)	489, 1098
EcoICRI	GAGCTC	1 cut(s)	625
EcoNI	CCTNNNNNAGG	1 cut(s)	665
EcoRII	CCWGG	2 cut(s)	926, 1001
EcoT14I	CCWWGG	3 cut(s)	277, 753, 1028
EcoT22I	ATGCAT	2 cut(s)	337, 1063
EcoT38I	GRGCYC	1 cut(s)	627
ErhI	CCWWGG	3 cut(s)	277, 753, 1028
FaeI	CATG	4 cut(s)	339, 656, 814, 1101
FaqI	GGGAC	2 cut(s)	506, 1080
FatI	CATG	4 cut(s)	335, 652, 810, 1097
Fnu4HI	GCNGC	3 cut(s)	417, 541, 631
FokI	GGATG	1 cut(s)	162
FriOI	GRGCYC	1 cut(s)	627
Fsp4HI	GCNGC	3 cut(s)	417, 541, 631
FspBI	CTAG	3 cut(s)	209, 477, 888
GlaI	GCGC	1 cut(s)	274
GluI	GCNGC	3 cut(s)	417, 541, 631
GsuI	CTGGAG	1 cut(s)	207
HaeIII	GGCC	1 cut(s)	282
HapII	CCGG	1 cut(s)	795
HhaI	GCGC	1 cut(s)	275
Hin1II	CATG	4 cut(s)	339, 656, 814, 1101
Hin6I	GCGC	1 cut(s)	273
HinP1I	GCGC	1 cut(s)	273
HincII	GTYRAC	1 cut(s)	1089
HindII	GTYRAC	1 cut(s)	1089
HindIII	AAGCTT	3 cut(s)	503, 938, 992
HinfI	GANTC	6 cut(s)	218, 317, 498, 512, 853, 1068
HpaII	CCGG	1 cut(s)	795
HphI	GGTGA	2 cut(s)	110, 272
Hpy166II	GTNNAC	1 cut(s)	1089
Hpy188I	TCNGA	6 cut(s)	448, 511, 597, 609, 706, 981
Hpy188III	TCNNGA	3 cut(s)	386, 653, 665
Hpy8I	GTNNAC	1 cut(s)	1089
HpyAV	CCTTC	5 cut(s)	488, 614, 659, 671, 955
HpyCH4III	ACNGT	3 cut(s)	98, 442, 975
HpyCH4V	TGCA	9 cut(s)	45, 323, 335, 633, 722, 741, 790, 1037, 1061
HpyF10VI	GCNNNNNNNGC	3 cut(s)	279, 734, 857
HpyF3I	CTNAG	4 cut(s)	140, 196, 222, 256
Hsp92II	CATG	4 cut(s)	339, 656, 814, 1101
HspAI	GCGC	1 cut(s)	273
KroI	GCCGGC	1 cut(s)	794
KroNI	GCCGGC	1 cut(s)	796
Kzo9I	GATC	3 cut(s)	245, 448, 744
LmnI	GCTCC	2 cut(s)	901, 1030
Lsp1109I	GCAGC	2 cut(s)	428, 617
LweI	GCATC	3 cut(s)	286, 463, 1012
MabI	ACCWGGT	1 cut(s)	926
MaeI	CTAG	3 cut(s)	209, 477, 888
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	3 cut(s)	247, 450, 746
MboI	GATC	3 cut(s)	245, 448, 744
MboII	GAAGA	7 cut(s)	98, 470, 482, 893, 920, 970, 1091
MfeI	CAATTG	1 cut(s)	165
MflI	RGATCY	1 cut(s)	448
MhlI	GDGCHC	2 cut(s)	627, 660
MluCI	AATT	4 cut(s)	165, 290, 699, 866
MlyI	GAGTC	2 cut(s)	862, 1062
MmeI	TCCRAC	1 cut(s)	1023
MnlI	CCTC	3 cut(s)	149, 661, 877
Mph1103I	ATGCAT	2 cut(s)	337, 1063
MroNI	GCCGGC	1 cut(s)	794
MroXI	GAANNNNTTC	1 cut(s)	700
MseI	TTAA	6 cut(s)	8, 48, 575, 675, 732, 869
MspI	CCGG	1 cut(s)	795
MspR9I	CCNGG	2 cut(s)	928, 1003
MunI	CAATTG	1 cut(s)	165
Mva1269I	GAATGC	2 cut(s)	275, 303
MvaI	CCWGG	2 cut(s)	928, 1003
MwoI	GCNNNNNNNGC	3 cut(s)	279, 734, 857
NaeI	GCCGGC	1 cut(s)	796
NdeII	GATC	3 cut(s)	245, 448, 744
NgoMIV	GCCGGC	1 cut(s)	794
NlaIII	CATG	4 cut(s)	339, 656, 814, 1101
NlaIV	GGNNCC	1 cut(s)	366
NmeAIII	GCCGAG	1 cut(s)	1052
NmuCI	GTSAC	1 cut(s)	211
NsiI	ATGCAT	2 cut(s)	337, 1063
NspI	RCATGY	1 cut(s)	339
NspV	TTCGAA	1 cut(s)	108
PagI	TCATGA	1 cut(s)	652
PctI	GAATGC	2 cut(s)	275, 303
PdiI	GCCGGC	1 cut(s)	796
PdmI	GAANNNNTTC	1 cut(s)	700
PfeI	GAWTC	4 cut(s)	218, 317, 498, 512
PkrI	GCNGC	3 cut(s)	418, 542, 632
PleI	GAGTC	2 cut(s)	861, 1062
PpsI	GAGTC	2 cut(s)	861, 1062
Psp124BI	GAGCTC	1 cut(s)	627
Psp6I	CCWGG	2 cut(s)	926, 1001
PspGI	CCWGG	2 cut(s)	926, 1001
PspN4I	GGNNCC	1 cut(s)	366
PstI	CTGCAG	2 cut(s)	325, 635
PsuI	RGATCY	1 cut(s)	448
RsaI	GTAC	2 cut(s)	439, 617
RsaNI	GTAC	2 cut(s)	438, 616
SacI	GAGCTC	1 cut(s)	627
SaqAI	TTAA	6 cut(s)	8, 48, 575, 675, 732, 869
SatI	GCNGC	3 cut(s)	417, 541, 631
Sau3AI	GATC	3 cut(s)	245, 448, 744
ScaI	AGTACT	1 cut(s)	617
SchI	GAGTC	2 cut(s)	862, 1062
ScrFI	CCNGG	2 cut(s)	928, 1003
SduI	GDGCHC	2 cut(s)	627, 660
SexAI	ACCWGGT	1 cut(s)	926
SfaNI	GCATC	3 cut(s)	286, 463, 1012
SfcI	CTRYAG	3 cut(s)	321, 631, 971
SfuI	TTCGAA	1 cut(s)	108
SmlI	CTYRAG	1 cut(s)	665
SmoI	CTYRAG	1 cut(s)	665
Sse9I	AATT	4 cut(s)	165, 290, 699, 866
SsiI	CCGC	2 cut(s)	414, 540
SspI	AATATT	1 cut(s)	718
SspMI	CTAG	3 cut(s)	209, 477, 888
SstI	GAGCTC	1 cut(s)	627
StyD4I	CCNGG	2 cut(s)	926, 1001
StyI	CCWWGG	3 cut(s)	277, 753, 1028
TaaI	ACNGT	3 cut(s)	98, 442, 975
TaqI	TCGA	3 cut(s)	108, 307, 1020
TasI	AATT	4 cut(s)	165, 290, 699, 866
TatI	WGTACW	1 cut(s)	615
TauI	GCSGC	1 cut(s)	543
TfiI	GAWTC	4 cut(s)	218, 317, 498, 512
Tru1I	TTAA	6 cut(s)	8, 48, 575, 675, 732, 869
Tru9I	TTAA	6 cut(s)	8, 48, 575, 675, 732, 869
TscAI	CASTG	3 cut(s)	381, 472, 993
TseFI	GTSAC	1 cut(s)	211
TseI	GCWGC	2 cut(s)	416, 630
Tsp45I	GTSAC	1 cut(s)	211
TspDTI	ATGAA	4 cut(s)	105, 546, 641, 827
TspRI	CASTG	3 cut(s)	381, 472, 993
XagI	CCTNNNNNAGG	1 cut(s)	665
XceI	RCATGY	1 cut(s)	339
XcmI	CCANNNNNNNNNTGG	1 cut(s)	296
XmnI	GAANNNNTTC	1 cut(s)	700
XspI	CTAG	3 cut(s)	209, 477, 888
ZrmI	AGTACT	1 cut(s)	617
Zsp2I	ATGCAT	2 cut(s)	337, 1063

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.