Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0008229

Physical Location & Seq

Genomic Coordinates Forward (+)

36369415 .. 36370128

Gene Structure 714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG203400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGAGATCAATACATTTAGATTAGTAAATTTCCTTTGTGTGACATCTTTGGCAATGGGAATGGTGGTTGACTCAATATCATCAACCCCACAACACTTTTCAGTTAGAACCAGCAATCATGGAAGGGCAATGTCAACTGCACCACCGCGTCCAGATATTAAGAATATCGATTCTTGCAGTGATGGCTTTTCTGGTGACTGCCTCAGTTATTCTGTTGAAGATGAAGAAGATGGTTCTAATGATGATAATCATAGATATATAAGCTATGAAGCCCTAAAAAAAAATATGGTTCCATGTGGTCAACCCGGACATTCGTATTACTATTGTGGTAGATCTGGGCAGGCTAATCCTTATAGGCGTGGCTGCAGTGTCATCACACGTTGTGCTAGATCTAATGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0005102 GO:0005179 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005623 GO:0005911 GO:0007154 GO:0007165 GO:0007267 GO:0008150 GO:0009506 GO:0009966 GO:0009987 GO:0010469 GO:0010646 GO:0010769 GO:0019722 GO:0019932 GO:0022603 GO:0022604 GO:0023051 GO:0023052 GO:0030054 GO:0030545 GO:0035556 GO:0040008 GO:0042995 GO:0043900 GO:0044464 GO:0045595 GO:0048018 GO:0048046 GO:0048583 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051510 GO:0051716 GO:0055044 GO:0060284 GO:0065007 GO:0065009 GO:0080092 GO:0090406 GO:0098772 GO:0120025 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RALF

Protein Analysis

133

Amino Acids

14.72

Weight (kDa)

6.04

Isoelectric Point (pI)

42.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RALF	PF05498	83 - 130	4.9e-21	Rapid ALkalinization Factor (RALF)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0008229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29780
fragaria_vesca	FvH4_2g13590
malus_domestica	MD09G1245200.v1.1 MD17G1237000.v1.1
prunus_persica	Prupe.3G141000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0275191 RchiOBHm_Chr6g0275201
rosa_laevigata	RLG00000013488 RLG00000013489
rosa_multiflora	Rmu_ssc0000041.1_g000018
rosa_roxburghii	Rroxscaffold_7G00193560 Rroxscaffold_7G00193570
rosa_rugosa	Rorug06G0090000 Rorug06G0090100
rosa_samantha	Rh6AG203300 Rh6AG203400 Rh6BG206100 Rh6BG206200 Rh6CG208500 Rh6CG208800 Rh6DG198600
rosa_wichuraiana	Rw6G017640 Rw6G017650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	148
AciI	CCGC	1 cut(s)	146
AcsI	RAATTY	1 cut(s)	28
AdeI	CACNNNGTG	1 cut(s)	383
AflIII	ACRYGT	1 cut(s)	377
AgsI	TTSAA	1 cut(s)	218
AluBI	AGCT	1 cut(s)	264
AluI	AGCT	1 cut(s)	264
ApeKI	GCWGC	1 cut(s)	363
ApoI	RAATTY	1 cut(s)	28
AsuC2I	CCSGG	1 cut(s)	306
AsuHPI	GGTGA	1 cut(s)	206
BbvI	GCAGC	1 cut(s)	350
BccI	CCATC	2 cut(s)	176, 224
BcnI	CCSGG	1 cut(s)	306
BfaI	CTAG	1 cut(s)	387
BfmI	CTRYAG	1 cut(s)	364
BglII	AGATCT	2 cut(s)	332, 389
BisI	GCNGC	1 cut(s)	364
BlsI	GCNGC	1 cut(s)	365
Bme1390I	CCNGG	1 cut(s)	306
BmiI	GGNNCC	1 cut(s)	291
BmrFI	CCNGG	1 cut(s)	306
BpuMI	CCSGG	1 cut(s)	306
Bsa29I	ATCGAT	1 cut(s)	168
BsaBI	GATNNNNATC	1 cut(s)	246
Bse3DI	GCAATG	2 cut(s)	60, 135
Bse8I	GATNNNNATC	1 cut(s)	246
BseCI	ATCGAT	1 cut(s)	168
BseJI	GATNNNNATC	1 cut(s)	246
BseMI	GCAATG	2 cut(s)	60, 135
BseMII	CTCAG	1 cut(s)	217
BseXI	GCAGC	1 cut(s)	350
BsgI	GTGCAG	1 cut(s)	123
Bsh1236I	CGCG	1 cut(s)	148
BshVI	ATCGAT	1 cut(s)	168
BsiSI	CCGG	1 cut(s)	306
Bsp143I	GATC	3 cut(s)	6, 332, 389
BspACI	CCGC	1 cut(s)	146
BspCNI	CTCAG	1 cut(s)	216
BspDI	ATCGAT	1 cut(s)	168
BspFNI	CGCG	1 cut(s)	148
BspLI	GGNNCC	1 cut(s)	291
BspMAI	CTGCAG	1 cut(s)	368
BsrDI	GCAATG	2 cut(s)	60, 135
BssMI	GATC	3 cut(s)	6, 332, 389
BstC8I	GCNNGC	1 cut(s)	342
BstDEI	CTNAG	1 cut(s)	203
BstFNI	CGCG	1 cut(s)	148
BstKTI	GATC	3 cut(s)	9, 335, 392
BstMBI	GATC	3 cut(s)	6, 332, 389
BstMWI	GCNNNNNNNGC	1 cut(s)	183
BstSCI	CCNGG	1 cut(s)	304
BstSFI	CTRYAG	1 cut(s)	364
BstUI	CGCG	1 cut(s)	148
BstV1I	GCAGC	1 cut(s)	350
BstX2I	RGATCY	2 cut(s)	332, 389
BstYI	RGATCY	2 cut(s)	332, 389
Bsu15I	ATCGAT	1 cut(s)	168
BsuTUI	ATCGAT	1 cut(s)	168
BtsI	GCAGTG	2 cut(s)	184, 373
BtsIMutI	CAGTG	2 cut(s)	184, 373
Cac8I	GCNNGC	1 cut(s)	342
ClaI	ATCGAT	1 cut(s)	168
CseI	GACGC	1 cut(s)	137
CviAII	CATG	2 cut(s)	119, 294
CviJI	RGCY	5 cut(s)	186, 264, 272, 344, 363
CviKI_1	RGCY	5 cut(s)	186, 264, 272, 344, 363
DdeI	CTNAG	1 cut(s)	203
DpnI	GATC	3 cut(s)	8, 334, 391
DpnII	GATC	3 cut(s)	6, 332, 389
DraIII	CACNNNGTG	1 cut(s)	383
FaeI	CATG	2 cut(s)	122, 297
FaiI	YATR	8 cut(s)	120, 252, 258, 260, 267, 287, 295, 354
FatI	CATG	2 cut(s)	118, 293
Fnu4HI	GCNGC	1 cut(s)	364
Fsp4HI	GCNGC	1 cut(s)	364
FspBI	CTAG	1 cut(s)	387
GluI	GCNGC	1 cut(s)	364
HapII	CCGG	1 cut(s)	306
HgaI	GACGC	1 cut(s)	137
Hin1II	CATG	2 cut(s)	122, 297
HincII	GTYRAC	3 cut(s)	70, 135, 302
HindII	GTYRAC	3 cut(s)	70, 135, 302
HinfI	GANTC	2 cut(s)	71, 170
HpaII	CCGG	1 cut(s)	306
HphI	GGTGA	1 cut(s)	206
Hpy166II	GTNNAC	3 cut(s)	70, 135, 302
Hpy188III	TCNNGA	1 cut(s)	152
Hpy8I	GTNNAC	3 cut(s)	70, 135, 302
HpyAV	CCTTC	1 cut(s)	117
HpyCH4IV	ACGT	1 cut(s)	379
HpyCH4V	TGCA	3 cut(s)	140, 177, 366
HpyF10VI	GCNNNNNNNGC	1 cut(s)	183
HpyF3I	CTNAG	1 cut(s)	203
HpySE526I	ACGT	1 cut(s)	379
Hsp92II	CATG	2 cut(s)	122, 297
Kzo9I	GATC	3 cut(s)	6, 332, 389
LpnPI	CCDG	6 cut(s)	124, 165, 177, 319, 321, 326
Lsp1109I	GCAGC	1 cut(s)	350
MaeI	CTAG	1 cut(s)	387
MaeII	ACGT	1 cut(s)	379
MaeIII	GTNAC	2 cut(s)	40, 194
MalI	GATC	3 cut(s)	8, 334, 391
MboI	GATC	3 cut(s)	6, 332, 389
MboII	GAAGA	3 cut(s)	230, 236, 239
MflI	RGATCY	2 cut(s)	332, 389
MluCI	AATT	1 cut(s)	28
MlyI	GAGTC	1 cut(s)	65
MnlI	CCTC	1 cut(s)	212
MseI	TTAA	2 cut(s)	159, 400
MspI	CCGG	1 cut(s)	306
MspR9I	CCNGG	1 cut(s)	306
MvnI	CGCG	1 cut(s)	148
MwoI	GCNNNNNNNGC	1 cut(s)	183
NciI	CCSGG	1 cut(s)	306
NdeII	GATC	3 cut(s)	6, 332, 389
NlaIII	CATG	2 cut(s)	122, 297
NlaIV	GGNNCC	1 cut(s)	291
NmuCI	GTSAC	2 cut(s)	40, 194
PfeI	GAWTC	1 cut(s)	170
PkrI	GCNGC	1 cut(s)	365
PleI	GAGTC	1 cut(s)	65
PpsI	GAGTC	1 cut(s)	65
PspN4I	GGNNCC	1 cut(s)	291
PstI	CTGCAG	1 cut(s)	368
PsuI	RGATCY	2 cut(s)	332, 389
SaqAI	TTAA	2 cut(s)	159, 400
SatI	GCNGC	1 cut(s)	364
Sau3AI	GATC	3 cut(s)	6, 332, 389
SchI	GAGTC	1 cut(s)	65
ScrFI	CCNGG	1 cut(s)	306
SetI	ASST	2 cut(s)	266, 382
SfcI	CTRYAG	1 cut(s)	364
Sse9I	AATT	1 cut(s)	28
SsiI	CCGC	1 cut(s)	146
SspMI	CTAG	1 cut(s)	387
StyD4I	CCNGG	1 cut(s)	304
TaiI	ACGT	1 cut(s)	382
TaqI	TCGA	1 cut(s)	168
TasI	AATT	1 cut(s)	28
TfiI	GAWTC	1 cut(s)	170
Tru1I	TTAA	2 cut(s)	159, 400
Tru9I	TTAA	2 cut(s)	159, 400
TscAI	CASTG	2 cut(s)	184, 373
TseFI	GTSAC	2 cut(s)	40, 194
TseI	GCWGC	1 cut(s)	363
Tsp45I	GTSAC	2 cut(s)	40, 194
TspDTI	ATGAA	2 cut(s)	237, 282
TspRI	CASTG	2 cut(s)	184, 373
XapI	RAATTY	1 cut(s)	28
XspI	CTAG	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.