Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0003013

Physical Location & Seq

Genomic Coordinates Forward (+)

24395718 .. 24400434

Gene Structure 4717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G255400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ATGGACACGGACGGAAATTCAGGAGACGCGTCGAGGGTGGTCCATGTGCGCTTCATCACGAAGCTCGACCGTCCTTTCAAAGTCCCAAATTCCTCCATTTCCGTCGCCTCCAATTTCACCCGATTTGGCCTATCCAGCGTCGTTAACAATCTTATCCAAACAGAGAATCCTGATTGGGAAGTGGAGCCTTTTGATTTTCTTATCAATGGCGAGCTGGTTCGGATGTCGCTTGAAAACTTCCTTCTTGCCAAGGGCATTTCTGCGGAAACAATATTGGAAATTGAATACATACGGGCTGTAGTTCCACGCAAAGAAGAAGAACCTTCTTTGCATGATGACTGGGTCAGTGCAGTTGATGGTTCTAGTCCCAGGTTTTTTTTGACAGGGTGCTATGATGGTTTAGGAAGGGTATGGAAAGCTGCTGGTGTATGTACACACATACTGGAAGGACACAGTGAACCTGTTTCTTCTGTTAGCATAATCAATCCAGAAGGTGCAGATAGTGTTACCGTAGCTACTGCTTCGAAAGACCGGACACTGAGACTGTGGAAGTTTAATGCAGAAGATACCAGAAGAAATCCTTTGAAGATAAGTGCATTCAAAATTTTGCGTGGACATAGAGCATCTGTTCAAAGTGTTGCTGCTCAGACCTCTGGAAACATGATCTGTTCAGGCTCTTGGGATTGCACGATCAATTTGTGGCAGACAAATGAGCCAGTTTCAGAAGGTGACACTGTATCAACAAAGAAGAGAAAAACCATTGGTCAAGCAAAGGAATCTCAGTCGGAGGGGGAGGCTGTTTCTTCTCTAGTGGGCCACACACAATGTGTATCTTCTGTAAAGTGGCCGGAGCGTGAAACAATATATTCTGCGTCGTGGGACCACTCTATTAGAAGGTGGAATGCCGAGACAGGCAAAGACTCGTTGAACATATTCTGCGGTAAAGCCCTCAACTGTCTCGATATTGGAGGTGAAAGTTCCGCTCTTGTTGCTGCTGGTGGTTCTGACCCTATTCTTAAGATATGGGATCCTCGTAAACCAGGAACTTCTGCTCCTGTCTATCAATTCTCATCTCACACTTCTTGGGTTACGGCATGCAAATGGCATGAGAAGTCTTGGTTTCATTTAATTTCTGCATCTCATGATGGAAAAGTTATGCTGTGGGATTTGAGAACTGCTTGGCCCTTATTTGTCATTGATGCACACAAAGACAAGGCACTATGTGCTGACTGGTGGAGAGGTGAAACTGTGCTTAGTGGTGGGGCAGATTCAAAGCTTTGCATGACTTCTGGGGCTTCTGTGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000460 GO:0000470 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005911 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030054 GO:0030684 GO:0030686 GO:0030687 GO:0031461 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0055044 GO:0070013 GO:0070545 GO:0071704 GO:0071840 GO:0080008 GO:0090304 GO:1901360 GO:1902494 GO:1990234 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NLE WD40

Protein Analysis

436

Amino Acids

47.83

Weight (kDa)

6.08

Isoelectric Point (pI)

37.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003013)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15550 AT5G15550 AT5G15550
fragaria_vesca	FvH4_6g46921 FvH4_6g46921 FvH4_6g46921 FvH4_6g46930 FvH4_6g46930 FvH4_6g46930 FvH4_6g46930 FvH4_6g46930 FvH4_6g46930 FvH4_6g46930
malus_domestica	MD09G1066000.v1.1 MD09G1066100.v1.1 MD17G1058700.v1.1 MD17G1058800.v1.1
prunus_persica	Prupe.3G255400_v2.0.a1 Prupe.3G255500_v2.0.a1
pyrus_communis	pycom111g05550 pycom17g05870
rosa_chinensis	RchiOBHm_Chr2g0165901 RchiOBHm_Chr2g0165911
rosa_laevigata	RLG00000021569
rosa_multiflora	Rmu_co8422767.1_g000001 Rmu_sc0006218.1_g000010
rosa_roxburghii	Rroxscaffold_2G00085310 Rroxscaffold_2G00085320
rosa_rugosa	Rorug02G0519200 Rorug02G0519300
rosa_samantha	Rh2AG584700 Rh2AG584800 Rh2BG596600 Rh2CG567400 Rh2DG606700 Rh2DG606800
rosa_wichuraiana	Rw2G048750 Rw2G048760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	983
AccII	CGCG	1 cut(s)	29
AciI	CCGC	3 cut(s)	263, 939, 981
AclWI	GGATC	2 cut(s)	1022, 1035
AcoI	YGGCCR	1 cut(s)	845
AcsI	RAATTY	3 cut(s)	16, 88, 603
AdeI	CACNNNGTG	2 cut(s)	827, 1223
AfaI	GTAC	1 cut(s)	433
AflII	CTTAAG	1 cut(s)	1016
AflIII	ACRYGT	1 cut(s)	27
AgsI	TTSAA	8 cut(s)	79, 233, 284, 586, 601, 632, 928, 1272
AjnI	CCWGG	2 cut(s)	368, 1039
AloI	GAACNNNNNNTCC	2 cut(s)	1036, 1068
AluBI	AGCT	5 cut(s)	64, 214, 419, 515, 1276
AluI	AGCT	5 cut(s)	64, 214, 419, 515, 1276
Alw26I	GTCTC	4 cut(s)	18, 535, 902, 962
AlwI	GGATC	2 cut(s)	1022, 1035
AoxI	GGCC	4 cut(s)	127, 814, 845, 1181
ApeKI	GCWGC	3 cut(s)	419, 641, 992
ApoI	RAATTY	3 cut(s)	16, 88, 603
Asp700I	GAANNNNTTC	1 cut(s)	932
AspLEI	GCGC	1 cut(s)	51
AspS9I	GGNCC	4 cut(s)	40, 814, 880, 1182
AsuHPI	GGTGA	4 cut(s)	109, 740, 983, 1253
AsuII	TTCGAA	1 cut(s)	524
AvaII	GGWCC	2 cut(s)	40, 880
BamHI	GGATCC	1 cut(s)	1027
BbvI	GCAGC	3 cut(s)	406, 628, 979
BccI	CCATC	3 cut(s)	350, 389, 1139
BceAI	ACGGC	1 cut(s)	1107
BciT130I	CCWGG	2 cut(s)	370, 1041
BcoDI	GTCTC	4 cut(s)	18, 535, 902, 962
BfaI	CTAG	2 cut(s)	363, 809
BfmI	CTRYAG	1 cut(s)	297
BfrI	CTTAAG	1 cut(s)	1016
BisI	GCNGC	3 cut(s)	420, 642, 993
BlsI	GCNGC	3 cut(s)	421, 643, 994
Bme1390I	CCNGG	2 cut(s)	370, 1041
Bme18I	GGWCC	2 cut(s)	40, 880
BmgT120I	GGNCC	4 cut(s)	40, 814, 880, 1182
BmiI	GGNNCC	3 cut(s)	186, 881, 1029
BmrFI	CCNGG	2 cut(s)	370, 1041
BmrI	ACTGGG	1 cut(s)	349
BmsI	GCATC	3 cut(s)	632, 1145, 1189
BmuI	ACTGGG	1 cut(s)	349
Bpu14I	TTCGAA	1 cut(s)	524
BsaJI	CCNNGG	2 cut(s)	249, 368
BsaWI	WCCGGW	1 cut(s)	531
BsaXI	ACNNNNNCTCC	2 cut(s)	1036, 1066
Bse1I	ACTGG	4 cut(s)	344, 447, 716, 1235
BseBI	CCWGG	2 cut(s)	370, 1041
BseDI	CCNNGG	2 cut(s)	249, 368
BseGI	GGATG	1 cut(s)	228
BseMII	CTCAG	3 cut(s)	530, 659, 794
BseNI	ACTGG	4 cut(s)	344, 447, 716, 1235
BseXI	GCAGC	3 cut(s)	406, 628, 979
BsgI	GTGCAG	2 cut(s)	369, 516
Bsh1236I	CGCG	1 cut(s)	29
Bsh1285I	CGRYCG	1 cut(s)	70
BshFI	GGCC	4 cut(s)	129, 816, 847, 1183
BsiEI	CGRYCG	1 cut(s)	70
BsiSI	CCGG	2 cut(s)	532, 848
BslFI	GGGAC	3 cut(s)	68, 351, 893
BsmAI	GTCTC	4 cut(s)	18, 535, 902, 962
BsmBI	CGTCTC	1 cut(s)	18
BsmFI	GGGAC	3 cut(s)	68, 351, 893
BsmI	GAATGC	2 cut(s)	596, 907
BsnI	GGCC	4 cut(s)	129, 816, 847, 1183
Bsp119I	TTCGAA	1 cut(s)	524
Bsp1407I	TGTACA	1 cut(s)	431
Bsp143I	GATC	3 cut(s)	663, 690, 1027
BspACI	CCGC	3 cut(s)	263, 939, 981
BspANI	GGCC	4 cut(s)	129, 816, 847, 1183
BspCNI	CTCAG	3 cut(s)	531, 658, 793
BspFNI	CGCG	1 cut(s)	29
BspHI	TCATGA	1 cut(s)	1141
BspLI	GGNNCC	3 cut(s)	186, 881, 1029
BspPI	GGATC	2 cut(s)	1022, 1035
BspT104I	TTCGAA	1 cut(s)	524
BspTI	CTTAAG	1 cut(s)	1016
BsrBI	CCGCTC	1 cut(s)	983
BsrGI	TGTACA	1 cut(s)	431
BsrI	ACTGG	4 cut(s)	344, 447, 716, 1235
BssECI	CCNNGG	2 cut(s)	249, 368
BssMI	GATC	3 cut(s)	663, 690, 1027
BssT1I	CCWWGG	1 cut(s)	249
Bst2UI	CCWGG	2 cut(s)	370, 1041
Bst4CI	ACNGT	7 cut(s)	71, 455, 511, 546, 736, 956, 1249
Bst6I	CTCTTC	1 cut(s)	743
BstAFI	CTTAAG	1 cut(s)	1016
BstAPI	GCANNNNNTGC	1 cut(s)	1223
BstAUI	TGTACA	1 cut(s)	431
BstBI	TTCGAA	1 cut(s)	524
BstC8I	GCNNGC	2 cut(s)	212, 1096
BstDEI	CTNAG	4 cut(s)	539, 645, 780, 1253
BstF5I	GGATG	1 cut(s)	228
BstFNI	CGCG	1 cut(s)	29
BstHHI	GCGC	1 cut(s)	51
BstKTI	GATC	3 cut(s)	666, 693, 1030
BstMAI	GTCTC	4 cut(s)	18, 535, 902, 962
BstMBI	GATC	3 cut(s)	663, 690, 1027
BstMCI	CGRYCG	1 cut(s)	70
BstMWI	GCNNNNNNNGC	3 cut(s)	135, 989, 1223
BstNI	CCWGG	2 cut(s)	370, 1041
BstNSI	RCATGY	1 cut(s)	1098
BstSCI	CCNGG	2 cut(s)	368, 1039
BstSFI	CTRYAG	1 cut(s)	297
BstUI	CGCG	1 cut(s)	29
BstV1I	GCAGC	3 cut(s)	406, 628, 979
BstX2I	RGATCY	1 cut(s)	1027
BstYI	RGATCY	1 cut(s)	1027
BsuRI	GGCC	4 cut(s)	129, 816, 847, 1183
BtsCI	GGATG	1 cut(s)	228
BtsIMutI	CAGTG	4 cut(s)	352, 460, 536, 732
Cac8I	GCNNGC	2 cut(s)	212, 1096
CciI	TCATGA	1 cut(s)	1141
CfoI	GCGC	1 cut(s)	51
Cfr13I	GGNCC	4 cut(s)	40, 814, 880, 1182
CseI	GACGC	4 cut(s)	18, 35, 127, 861
Csp6I	GTAC	1 cut(s)	432
CviAII	CATG	7 cut(s)	44, 332, 661, 1095, 1106, 1142, 1282
CviQI	GTAC	1 cut(s)	432
DdeI	CTNAG	4 cut(s)	539, 645, 780, 1253
DpnI	GATC	3 cut(s)	665, 692, 1029
DpnII	GATC	3 cut(s)	663, 690, 1027
DraIII	CACNNNGTG	2 cut(s)	827, 1223
EaeI	YGGCCR	1 cut(s)	845
Eam1104I	CTCTTC	1 cut(s)	743
EarI	CTCTTC	1 cut(s)	743
Eco130I	CCWWGG	1 cut(s)	249
Eco47I	GGWCC	2 cut(s)	40, 880
EcoRII	CCWGG	2 cut(s)	368, 1039
EcoT14I	CCWWGG	1 cut(s)	249
ErhI	CCWWGG	1 cut(s)	249
Esp3I	CGTCTC	1 cut(s)	18
FaeI	CATG	7 cut(s)	47, 335, 664, 1098, 1109, 1145, 1285
FalI	AAGNNNNNCTT	2 cut(s)	565, 597
FaqI	GGGAC	3 cut(s)	68, 351, 893
FatI	CATG	7 cut(s)	43, 331, 660, 1094, 1105, 1141, 1281
Fnu4HI	GCNGC	3 cut(s)	420, 642, 993
FokI	GGATG	1 cut(s)	235
Fsp4HI	GCNGC	3 cut(s)	420, 642, 993
FspBI	CTAG	2 cut(s)	363, 809
GlaI	GCGC	1 cut(s)	50
GluI	GCNGC	3 cut(s)	420, 642, 993
HaeIII	GGCC	4 cut(s)	129, 816, 847, 1183
HapII	CCGG	2 cut(s)	532, 848
HgaI	GACGC	4 cut(s)	18, 35, 127, 861
HhaI	GCGC	1 cut(s)	51
Hin1II	CATG	7 cut(s)	47, 335, 664, 1098, 1109, 1145, 1285
Hin6I	GCGC	1 cut(s)	49
HinP1I	GCGC	1 cut(s)	49
HincII	GTYRAC	1 cut(s)	145
HindII	GTYRAC	1 cut(s)	145
HindIII	AAGCTT	1 cut(s)	1274
HinfI	GANTC	4 cut(s)	166, 776, 920, 1268
HpaI	GTTAAC	1 cut(s)	145
HpaII	CCGG	2 cut(s)	532, 848
HphI	GGTGA	4 cut(s)	109, 740, 983, 1253
Hpy166II	GTNNAC	5 cut(s)	145, 434, 458, 614, 1037
Hpy188I	TCNGA	5 cut(s)	222, 648, 724, 787, 1006
Hpy188III	TCNNGA	7 cut(s)	21, 58, 170, 488, 654, 959, 1142
Hpy8I	GTNNAC	5 cut(s)	145, 434, 458, 614, 1037
Hpy99I	CGWCG	4 cut(s)	34, 107, 143, 877
HpyAV	CCTTC	7 cut(s)	251, 333, 399, 440, 485, 719, 888
HpyCH4III	ACNGT	7 cut(s)	71, 455, 511, 546, 736, 956, 1249
HpyF10VI	GCNNNNNNNGC	3 cut(s)	135, 989, 1223
HpyF3I	CTNAG	4 cut(s)	539, 645, 780, 1253
Hsp92II	CATG	7 cut(s)	47, 335, 664, 1098, 1109, 1145, 1285
HspAI	GCGC	1 cut(s)	49
KspAI	GTTAAC	1 cut(s)	145
Kzo9I	GATC	3 cut(s)	663, 690, 1027
LmnI	GCTCC	3 cut(s)	184, 850, 1057
Lsp1109I	GCAGC	3 cut(s)	406, 628, 979
LweI	GCATC	3 cut(s)	632, 1145, 1189
MaeI	CTAG	2 cut(s)	363, 809
MaeIII	GTNAC	3 cut(s)	505, 728, 1087
MalI	GATC	3 cut(s)	665, 692, 1029
MbiI	CCGCTC	1 cut(s)	983
MboI	GATC	3 cut(s)	663, 690, 1027
MboII	GAAGA	9 cut(s)	326, 329, 459, 575, 585, 598, 760, 795, 825
MflI	RGATCY	1 cut(s)	1027
MluCI	AATT	8 cut(s)	16, 88, 112, 279, 603, 694, 1064, 1128
MluI	ACGCGT	1 cut(s)	27
MlyI	GAGTC	1 cut(s)	914
MmeI	TCCRAC	1 cut(s)	765
MroXI	GAANNNNTTC	1 cut(s)	932
MseI	TTAA	4 cut(s)	144, 555, 1017, 1127
MslI	CAYNNNNRTG	1 cut(s)	1099
MspCI	CTTAAG	1 cut(s)	1016
MspI	CCGG	2 cut(s)	532, 848
MspR9I	CCNGG	2 cut(s)	370, 1041
Mva1269I	GAATGC	2 cut(s)	596, 907
MvaI	CCWGG	2 cut(s)	370, 1041
MvnI	CGCG	1 cut(s)	29
MwoI	GCNNNNNNNGC	3 cut(s)	135, 989, 1223
NdeII	GATC	3 cut(s)	663, 690, 1027
NlaIII	CATG	7 cut(s)	47, 335, 664, 1098, 1109, 1145, 1285
NlaIV	GGNNCC	3 cut(s)	186, 881, 1029
NmeAIII	GCCGAG	1 cut(s)	931
NmuCI	GTSAC	1 cut(s)	728
NspI	RCATGY	1 cut(s)	1098
NspV	TTCGAA	1 cut(s)	524
PaeI	GCATGC	1 cut(s)	1098
PagI	TCATGA	1 cut(s)	1141
PctI	GAATGC	2 cut(s)	596, 907
PdmI	GAANNNNTTC	1 cut(s)	932
PfeI	GAWTC	3 cut(s)	166, 776, 1268
PflFI	GACNNNGTC	1 cut(s)	341
PkrI	GCNGC	3 cut(s)	421, 643, 994
PleI	GAGTC	1 cut(s)	914
PpsI	GAGTC	1 cut(s)	914
Psp6I	CCWGG	2 cut(s)	368, 1039
PspGI	CCWGG	2 cut(s)	368, 1039
PspN4I	GGNNCC	3 cut(s)	186, 881, 1029
PspPI	GGNCC	4 cut(s)	40, 814, 880, 1182
PsuI	RGATCY	1 cut(s)	1027
PsyI	GACNNNGTC	1 cut(s)	341
RsaI	GTAC	1 cut(s)	433
RsaNI	GTAC	1 cut(s)	432
RseI	CAYNNNNRTG	1 cut(s)	1099
SaqAI	TTAA	4 cut(s)	144, 555, 1017, 1127
SatI	GCNGC	3 cut(s)	420, 642, 993
Sau3AI	GATC	3 cut(s)	663, 690, 1027
Sau96I	GGNCC	4 cut(s)	40, 814, 880, 1182
SchI	GAGTC	1 cut(s)	914
ScrFI	CCNGG	2 cut(s)	370, 1041
SfaNI	GCATC	3 cut(s)	632, 1145, 1189
SfcI	CTRYAG	1 cut(s)	297
SfuI	TTCGAA	1 cut(s)	524
SinI	GGWCC	2 cut(s)	40, 880
SmiMI	CAYNNNNRTG	1 cut(s)	1099
SmlI	CTYRAG	1 cut(s)	1016
SmoI	CTYRAG	1 cut(s)	1016
SphI	GCATGC	1 cut(s)	1098
Sse9I	AATT	8 cut(s)	16, 88, 112, 279, 603, 694, 1064, 1128
SsiI	CCGC	3 cut(s)	263, 939, 981
SspI	AATATT	1 cut(s)	273
SspMI	CTAG	2 cut(s)	363, 809
StyD4I	CCNGG	2 cut(s)	368, 1039
StyI	CCWWGG	1 cut(s)	249
TaaI	ACNGT	7 cut(s)	71, 455, 511, 546, 736, 956, 1249
TaqI	TCGA	4 cut(s)	32, 66, 524, 960
TasI	AATT	8 cut(s)	16, 88, 112, 279, 603, 694, 1064, 1128
TatI	WGTACW	1 cut(s)	431
TfiI	GAWTC	3 cut(s)	166, 776, 1268
Tru1I	TTAA	4 cut(s)	144, 555, 1017, 1127
Tru9I	TTAA	4 cut(s)	144, 555, 1017, 1127
TscAI	CASTG	4 cut(s)	352, 460, 543, 739
TseFI	GTSAC	1 cut(s)	728
TseI	GCWGC	3 cut(s)	419, 641, 992
Tsp45I	GTSAC	1 cut(s)	728
TspDTI	ATGAA	2 cut(s)	43, 1112
TspGWI	ACGGA	3 cut(s)	23, 27, 91
TspRI	CASTG	4 cut(s)	352, 460, 543, 739
Tth111I	GACNNNGTC	1 cut(s)	341
Vha464I	CTTAAG	1 cut(s)	1016
VpaK11BI	GGWCC	2 cut(s)	40, 880
XapI	RAATTY	3 cut(s)	16, 88, 603
XceI	RCATGY	1 cut(s)	1098
XmnI	GAANNNNTTC	1 cut(s)	932
XspI	CTAG	2 cut(s)	363, 809

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.