Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8422767.1

Orthogroup ID

OG0003013

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1297

Gene Structure 1297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8422767.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 244 bp

atgcccttattacaggagaagacattggaaattgaatatatacgggctgttgtcccacgcagagaagaagagccttgtttgcatggtgactgggtcggtgcagttgatggttccagtcctgggttcattttgacagggtgctatgatggtttaggaagggtatggaaagcttctggaacatgtacacatatactgcaaggacacagtgaaccagttacatctgttagtgttatcagtgcagaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000460 GO:0000470 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005911 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030054 GO:0030684 GO:0030686 GO:0030687 GO:0031461 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0055044 GO:0070013 GO:0070545 GO:0071704 GO:0071840 GO:0080008 GO:0090304 GO:1901360 GO:1902494 GO:1990234 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NLE WD40

Protein Analysis

81

Amino Acids

8.78

Weight (kDa)

5.03

Isoelectric Point (pI)

76.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003013)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15550 AT5G15550 AT5G15550
fragaria_vesca	FvH4_6g46921 FvH4_6g46921 FvH4_6g46921 FvH4_6g46930 FvH4_6g46930 FvH4_6g46930 FvH4_6g46930 FvH4_6g46930 FvH4_6g46930 FvH4_6g46930
malus_domestica	MD09G1066000.v1.1 MD09G1066100.v1.1 MD17G1058700.v1.1 MD17G1058800.v1.1
prunus_persica	Prupe.3G255400_v2.0.a1 Prupe.3G255500_v2.0.a1
pyrus_communis	pycom111g05550 pycom17g05870
rosa_chinensis	RchiOBHm_Chr2g0165901 RchiOBHm_Chr2g0165911
rosa_laevigata	RLG00000021569
rosa_multiflora	Rmu_co8422767.1_g000001 Rmu_sc0006218.1_g000010
rosa_roxburghii	Rroxscaffold_2G00085310 Rroxscaffold_2G00085320
rosa_rugosa	Rorug02G0519200 Rorug02G0519300
rosa_samantha	Rh2AG584700 Rh2AG584800 Rh2BG596600 Rh2CG567400 Rh2DG606700 Rh2DG606800
rosa_wichuraiana	Rw2G048750 Rw2G048760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	184
AfiI	CCNNNNNNNGG	1 cut(s)	120
AflIII	ACRYGT	1 cut(s)	179
AgsI	TTSAA	1 cut(s)	35
AjnI	CCWGG	1 cut(s)	118
AluBI	AGCT	1 cut(s)	170
AluI	AGCT	1 cut(s)	170
AsuHPI	GGTGA	1 cut(s)	98
BbsI	GAAGAC	1 cut(s)	26
BccI	CCATC	2 cut(s)	101, 140
BciT130I	CCWGG	1 cut(s)	120
Bme1390I	CCNGG	1 cut(s)	120
BmiI	GGNNCC	1 cut(s)	112
BmrFI	CCNGG	1 cut(s)	120
BmrI	ACTGGG	1 cut(s)	100
BmuI	ACTGGG	1 cut(s)	100
BpiI	GAAGAC	1 cut(s)	26
BsaJI	CCNNGG	1 cut(s)	119
Bsc4I	CCNNNNNNNGG	1 cut(s)	120
Bse1I	ACTGG	3 cut(s)	95, 114, 212
BseBI	CCWGG	1 cut(s)	120
BseDI	CCNNGG	1 cut(s)	119
BseLI	CCNNNNNNNGG	1 cut(s)	120
BseNI	ACTGG	3 cut(s)	95, 114, 212
BsgI	GTGCAG	1 cut(s)	120
BslFI	GGGAC	1 cut(s)	38
BslI	CCNNNNNNNGG	1 cut(s)	120
BsmFI	GGGAC	1 cut(s)	38
Bsp1407I	TGTACA	1 cut(s)	182
BspLI	GGNNCC	1 cut(s)	112
BspQI	GCTCTTC	1 cut(s)	63
BsrGI	TGTACA	1 cut(s)	182
BsrI	ACTGG	3 cut(s)	95, 114, 212
BssECI	CCNNGG	1 cut(s)	119
Bst2UI	CCWGG	1 cut(s)	120
Bst4CI	ACNGT	1 cut(s)	206
Bst6I	CTCTTC	1 cut(s)	63
BstAUI	TGTACA	1 cut(s)	182
BstMWI	GCNNNNNNNGC	1 cut(s)	79
BstNI	CCWGG	1 cut(s)	120
BstNSI	RCATGY	1 cut(s)	183
BstSCI	CCNGG	1 cut(s)	118
BstV2I	GAAGAC	1 cut(s)	26
BtsIMutI	CAGTG	2 cut(s)	211, 241
Csp6I	GTAC	1 cut(s)	183
CviAII	CATG	2 cut(s)	83, 180
CviJI	RGCY	3 cut(s)	47, 73, 170
CviKI_1	RGCY	3 cut(s)	47, 73, 170
CviQI	GTAC	1 cut(s)	183
Eam1104I	CTCTTC	1 cut(s)	63
EarI	CTCTTC	1 cut(s)	63
EcoRII	CCWGG	1 cut(s)	118
FaeI	CATG	2 cut(s)	86, 183
FaiI	YATR	8 cut(s)	39, 41, 84, 144, 163, 181, 189, 191
FaqI	GGGAC	1 cut(s)	38
FatI	CATG	2 cut(s)	82, 179
Hin1II	CATG	2 cut(s)	86, 183
HindIII	AAGCTT	1 cut(s)	168
HphI	GGTGA	1 cut(s)	98
Hpy166II	GTNNAC	2 cut(s)	185, 209
Hpy188III	TCNNGA	1 cut(s)	174
Hpy8I	GTNNAC	2 cut(s)	185, 209
HpyAV	CCTTC	1 cut(s)	150
HpyCH4III	ACNGT	1 cut(s)	206
HpyCH4V	TGCA	4 cut(s)	82, 101, 196, 239
HpyF10VI	GCNNNNNNNGC	1 cut(s)	79
Hsp92II	CATG	2 cut(s)	86, 183
LguI	GCTCTTC	1 cut(s)	63
LpnPI	CCDG	7 cut(s)	76, 105, 120, 127, 132, 159, 225
MaeIII	GTNAC	2 cut(s)	86, 214
MboII	GAAGA	3 cut(s)	31, 77, 80
MluCI	AATT	1 cut(s)	30
MspR9I	CCNGG	1 cut(s)	120
MvaI	CCWGG	1 cut(s)	120
MwoI	GCNNNNNNNGC	1 cut(s)	79
NlaIII	CATG	2 cut(s)	86, 183
NlaIV	GGNNCC	1 cut(s)	112
NmuCI	GTSAC	1 cut(s)	86
NspI	RCATGY	1 cut(s)	183
PciI	ACATGT	1 cut(s)	179
PciSI	GCTCTTC	1 cut(s)	63
PflFI	GACNNNGTC	1 cut(s)	92
PscI	ACATGT	1 cut(s)	179
Psp6I	CCWGG	1 cut(s)	118
PspGI	CCWGG	1 cut(s)	118
PspN4I	GGNNCC	1 cut(s)	112
PsyI	GACNNNGTC	1 cut(s)	92
RsaI	GTAC	1 cut(s)	184
RsaNI	GTAC	1 cut(s)	183
SapI	GCTCTTC	1 cut(s)	63
ScrFI	CCNGG	1 cut(s)	120
SetI	ASST	1 cut(s)	172
Sse9I	AATT	1 cut(s)	30
StyD4I	CCNGG	1 cut(s)	118
TaaI	ACNGT	1 cut(s)	206
TasI	AATT	1 cut(s)	30
TatI	WGTACW	1 cut(s)	182
TscAI	CASTG	2 cut(s)	211, 241
TseFI	GTSAC	1 cut(s)	86
Tsp45I	GTSAC	1 cut(s)	86
TspDTI	ATGAA	1 cut(s)	115
TspRI	CASTG	2 cut(s)	211, 241
Tth111I	GACNNNGTC	1 cut(s)	92
XceI	RCATGY	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.