Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003013

Physical Location & Seq

Genomic Coordinates Reverse (-)

65045861 .. 65046472

Gene Structure 612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0519200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGACAAGAGTTGGGTAAGATTGAAGAGGGGTAGTGCAGATTACAAATCATGTGTAAATGGGGAGTGGCATGACGGGGATACTGTCTATGACCACTTGGTGGTTGAAGGTATTGCCCATTCATACATAGATGGTCCTTGGGTGTGGCATGGTGAAGCATTCGGTGTTCAACAGCCTGTGTGTACGACCTATGGAGAAGATACTAATTCTGGCATGGCTGACATGATACATGATCTTTTCCCAAGCATAGATGGACTAGAAGGTCCGTGTGAGAATGAGAACAATGCTCCCACATCTGAGAATGAGAACCATGGTCCACCCCAACCTATGCCAGATTATGTTCATCATTTTCAACGGTTGCTGGAAGAAGCCAATCAGGACTTATATCCAGGTTGCAGAGCAATGAAAAAGCTGGAATTTCTTATCGAAGTATTCCAGAACAAGTGCTTATATGGCCAAAGTGATGTATCTGTATCTGCGTGGCTGAAGCTGATTAAAAAAATTCTCCCAGAAGGGGAGACATTGCCTAGCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 ko04973 map00500 map01100 map04973

Pfam Domains

Protein Families

Alpha-amyl_C2 Alpha-amylase

Protein Analysis

178

Amino Acids

20.08

Weight (kDa)

4.81

Isoelectric Point (pI)

34.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003013)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15550 AT5G15550 AT5G15550
fragaria_vesca	FvH4_6g46921 FvH4_6g46921 FvH4_6g46921 FvH4_6g46930 FvH4_6g46930 FvH4_6g46930 FvH4_6g46930 FvH4_6g46930 FvH4_6g46930 FvH4_6g46930
malus_domestica	MD09G1066000.v1.1 MD09G1066100.v1.1 MD17G1058700.v1.1 MD17G1058800.v1.1
prunus_persica	Prupe.3G255400_v2.0.a1 Prupe.3G255500_v2.0.a1
pyrus_communis	pycom111g05550 pycom17g05870
rosa_chinensis	RchiOBHm_Chr2g0165901 RchiOBHm_Chr2g0165911
rosa_laevigata	RLG00000021569
rosa_multiflora	Rmu_co8422767.1_g000001 Rmu_sc0006218.1_g000010
rosa_roxburghii	Rroxscaffold_2G00085310 Rroxscaffold_2G00085320
rosa_rugosa	Rorug02G0519200 Rorug02G0519300
rosa_samantha	Rh2AG584700 Rh2AG584800 Rh2BG596600 Rh2CG567400 Rh2DG606700 Rh2DG606800
rosa_wichuraiana	Rw2G048750 Rw2G048760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	261
AccB7I	CCANNNNNTGG	1 cut(s)	100
AcoI	YGGCCR	1 cut(s)	454
AcsI	RAATTY	2 cut(s)	416, 501
AcuI	CTGAAG	1 cut(s)	506
AdeI	CACNNNGTG	1 cut(s)	100
AfaI	GTAC	1 cut(s)	184
AfiI	CCNNNNNNNGG	2 cut(s)	100, 514
AgsI	TTSAA	4 cut(s)	25, 107, 170, 353
AjnI	CCWGG	1 cut(s)	388
AluBI	AGCT	2 cut(s)	412, 490
AluI	AGCT	2 cut(s)	412, 490
Alw26I	GTCTC	1 cut(s)	512
AoxI	GGCC	1 cut(s)	454
ApoI	RAATTY	2 cut(s)	416, 501
AspS9I	GGNCC	3 cut(s)	134, 263, 314
AsuHPI	GGTGA	1 cut(s)	164
AvaII	GGWCC	3 cut(s)	134, 263, 314
BalI	TGGCCA	1 cut(s)	456
BccI	CCATC	2 cut(s)	125, 245
BciT130I	CCWGG	1 cut(s)	390
BciVI	GTATCC	1 cut(s)	73
BcoDI	GTCTC	1 cut(s)	512
BfaI	CTAG	2 cut(s)	257, 528
BfuI	GTATCC	1 cut(s)	73
Bme1390I	CCNGG	1 cut(s)	390
Bme18I	GGWCC	3 cut(s)	134, 263, 314
BmgT120I	GGNCC	3 cut(s)	134, 263, 314
BmrFI	CCNGG	1 cut(s)	390
BsaJI	CCNNGG	2 cut(s)	137, 310
Bsc4I	CCNNNNNNNGG	2 cut(s)	100, 514
Bse3DI	GCAATG	2 cut(s)	408, 521
BseBI	CCWGG	1 cut(s)	390
BseDI	CCNNGG	2 cut(s)	137, 310
BseLI	CCNNNNNNNGG	2 cut(s)	100, 514
BseMI	GCAATG	2 cut(s)	408, 521
BseMII	CTCAG	1 cut(s)	288
BsgI	GTGCAG	1 cut(s)	57
BshFI	GGCC	1 cut(s)	456
BslI	CCNNNNNNNGG	2 cut(s)	100, 514
BsmAI	GTCTC	1 cut(s)	512
BsmI	GAATGC	1 cut(s)	158
BsnI	GGCC	1 cut(s)	456
Bsp143I	GATC	1 cut(s)	232
Bsp19I	CCATGG	1 cut(s)	310
BspANI	GGCC	1 cut(s)	456
BspCNI	CTCAG	1 cut(s)	289
BsrDI	GCAATG	2 cut(s)	408, 521
BssECI	CCNNGG	2 cut(s)	137, 310
BssMI	GATC	1 cut(s)	232
BssT1I	CCWWGG	2 cut(s)	137, 310
Bst2UI	CCWGG	1 cut(s)	390
Bst4CI	ACNGT	2 cut(s)	85, 357
Bst6I	CTCTTC	1 cut(s)	20
BstDEI	CTNAG	1 cut(s)	297
BstDSI	CCRYGG	1 cut(s)	310
BstKTI	GATC	1 cut(s)	235
BstMAI	GTCTC	1 cut(s)	512
BstMBI	GATC	1 cut(s)	232
BstMWI	GCNNNNNNNGC	1 cut(s)	453
BstNI	CCWGG	1 cut(s)	390
BstSCI	CCNGG	1 cut(s)	388
BsuI	GTATCC	1 cut(s)	73
BsuRI	GGCC	1 cut(s)	456
BtgI	CCRYGG	1 cut(s)	310
Cfr13I	GGNCC	3 cut(s)	134, 263, 314
Csp6I	GTAC	1 cut(s)	183
CviAII	CATG	7 cut(s)	51, 71, 149, 214, 223, 230, 311
CviJI	RGCY	7 cut(s)	175, 218, 371, 412, 456, 484, 490
CviKI_1	RGCY	7 cut(s)	175, 218, 371, 412, 456, 484, 490
CviQI	GTAC	1 cut(s)	183
DdeI	CTNAG	1 cut(s)	297
DpnI	GATC	1 cut(s)	234
DpnII	GATC	1 cut(s)	232
DraIII	CACNNNGTG	1 cut(s)	100
DrdI	GACNNNNNNGTC	1 cut(s)	261
DseDI	GACNNNNNNGTC	1 cut(s)	261
EaeI	YGGCCR	1 cut(s)	454
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
Eco130I	CCWWGG	2 cut(s)	137, 310
Eco47I	GGWCC	3 cut(s)	134, 263, 314
Eco57I	CTGAAG	1 cut(s)	506
EcoRII	CCWGG	1 cut(s)	388
EcoT14I	CCWWGG	2 cut(s)	137, 310
ErhI	CCWWGG	2 cut(s)	137, 310
FaeI	CATG	7 cut(s)	54, 74, 152, 217, 226, 233, 314
FatI	CATG	7 cut(s)	50, 70, 148, 213, 222, 229, 310
FspBI	CTAG	2 cut(s)	257, 528
HaeIII	GGCC	1 cut(s)	456
Hin1II	CATG	7 cut(s)	54, 74, 152, 217, 226, 233, 314
HphI	GGTGA	1 cut(s)	164
Hpy166II	GTNNAC	2 cut(s)	183, 317
Hpy188I	TCNGA	1 cut(s)	298
Hpy188III	TCNNGA	2 cut(s)	377, 436
Hpy8I	GTNNAC	2 cut(s)	183, 317
HpyAV	CCTTC	3 cut(s)	101, 254, 506
HpyCH4III	ACNGT	2 cut(s)	85, 357
HpyCH4V	TGCA	2 cut(s)	38, 396
HpyF10VI	GCNNNNNNNGC	1 cut(s)	453
HpyF3I	CTNAG	1 cut(s)	297
Hsp92II	CATG	7 cut(s)	54, 74, 152, 217, 226, 233, 314
Kzo9I	GATC	1 cut(s)	232
LmnI	GCTCC	1 cut(s)	292
MaeI	CTAG	2 cut(s)	257, 528
MalI	GATC	1 cut(s)	234
MboI	GATC	1 cut(s)	232
MboII	GAAGA	3 cut(s)	37, 209, 377
MlsI	TGGCCA	1 cut(s)	456
MluCI	AATT	3 cut(s)	205, 416, 501
MluNI	TGGCCA	1 cut(s)	456
MnlI	CCTC	1 cut(s)	21
Mox20I	TGGCCA	1 cut(s)	456
MscI	TGGCCA	1 cut(s)	456
MseI	TTAA	1 cut(s)	495
Msp20I	TGGCCA	1 cut(s)	456
MspR9I	CCNGG	1 cut(s)	390
Mva1269I	GAATGC	1 cut(s)	158
MvaI	CCWGG	1 cut(s)	390
MwoI	GCNNNNNNNGC	1 cut(s)	453
NcoI	CCATGG	1 cut(s)	310
NdeII	GATC	1 cut(s)	232
NlaIII	CATG	7 cut(s)	54, 74, 152, 217, 226, 233, 314
PctI	GAATGC	1 cut(s)	158
PflMI	CCANNNNNTGG	1 cut(s)	100
Psp6I	CCWGG	1 cut(s)	388
PspGI	CCWGG	1 cut(s)	388
PspPI	GGNCC	3 cut(s)	134, 263, 314
RsaI	GTAC	1 cut(s)	184
RsaNI	GTAC	1 cut(s)	183
SaqAI	TTAA	1 cut(s)	495
Sau3AI	GATC	1 cut(s)	232
Sau96I	GGNCC	3 cut(s)	134, 263, 314
ScrFI	CCNGG	1 cut(s)	390
SetI	ASST	7 cut(s)	112, 191, 265, 328, 394, 414, 492
SinI	GGWCC	3 cut(s)	134, 263, 314
Sse9I	AATT	3 cut(s)	205, 416, 501
SspMI	CTAG	2 cut(s)	257, 528
StyD4I	CCNGG	1 cut(s)	388
StyI	CCWWGG	2 cut(s)	137, 310
TaaI	ACNGT	2 cut(s)	85, 357
TaqI	TCGA	1 cut(s)	426
TasI	AATT	3 cut(s)	205, 416, 501
Tru1I	TTAA	1 cut(s)	495
Tru9I	TTAA	1 cut(s)	495
TspDTI	ATGAA	3 cut(s)	111, 332, 419
TspGWI	ACGGA	1 cut(s)	255
Van91I	CCANNNNNTGG	1 cut(s)	100
VpaK11BI	GGWCC	3 cut(s)	134, 263, 314
XapI	RAATTY	2 cut(s)	416, 501
XspI	CTAG	2 cut(s)	257, 528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.