Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0003013

Physical Location & Seq

Genomic Coordinates Forward (+)

24401236 .. 24408635

Gene Structure 7400 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G255500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2916 bp

ATGGGTAGCATTTCATTGCCTGACATGGCAGTTGGGATCATTCACCACTGTCCCACTGCTTATTCAGGTGCACATTGGAAGTATGATAAGAATTTATGCCTGGGGCGGCGTCCTCCTATCTTTAGAACTGCTTCGAAAAGAAAAAAGAACCTTTTCTGCAAACCTCATTGGCTATGTAAATCAAGAACAAGAATTTTATCAAGCATGGATGATTCCAGTGACACTTTTGCAGATGTGGTTGAAACTTCAGGAAGAAATGAAGTGTTGAACATAGAAGAAGATGAATTAATTACCGCTAGAAAAGCTCTTTCTGAGGCCCAAGCTAGACAAGAAGCCATTGAGAAAGAGAGAGATCAATTGCTTGAAAAATTGGCCTGTTCGGAAGCTAAACAACAGGAATATGTTGCTACCATATTGCATGAGAAGGAACTGGCTATTGCAGAAGTTGAGGCAGCCAAGTCTTTGTTCCATCAGAAGCTGCAGGAATCAGTTGAAGAGAAGTTCAGCTTGGAATCTAAGTTAGTCCTTGCAAAAAATGATGCTGTTGAACTTGCAGTGCAAGTAGAAAAGTTAGCAGAAATTGCTTTTCAGCAGGCCACATCTCACATTCTAGAAGATGCTCAGTTAAGGGTTTCAGCTGCAGAAACTGCAGCTGCTGAAGCAGCTTATGAGATAGAAAAGCAAATTAGGGATGTGACTGAAGGGAGTATATTGTCAATTGTGGAACAATCAAAATATGCCATAGAGAAGGCACTGGATGTGGCAGAAAAAGCTGGCGAGCATGCAACAAAAGCAGTATCAGAATTTACTGAAGGTATGAATCCACTGGATGAGCTTGCTTCCATCCAGTCAAAAAATATTATGTTACAGGGTGTCGTAAATGATTTAGAATCTCAGTTACTGCTTACAAGAAGTGACGTTGATAGGTTGAAGTTGGAGTTGGAAAAGGCCCATGCACATGCAAATGCGTTTGAGCTCCGAGCTAAGGATGCTGAGAAAGCACTGCTTGAATTTCAGGAGTCAAGCAAGAAAAACACTCTCCAGAAAGAGGAGGAAATTATGTCTTTGATAGAGAAAATGAAGAAAGATTCATCAGAAAGAAAGAAGGCTTCTTCAAAGGCTTTTAAGGCTGAGTTGCAAAGCATTAGGGATGCTATTGGAGCTGCCAAAGAAATGGCGCATTCCAAAGATGATGCCTACTTGAGAAGATGCGAAGCACTGCAGAGATCATTGAAGGCATCTGAAGCTACTACAAAGATGTGGAGACAGAGAGCAGAAATGGCAGAATCAATATTATGTGAGGAAAGACCACTAGGTGAAGGGGATGAAGATTCCATTTATGTTGTTAACGGTGGACGAATCGACCTTTTGACAGATGATGATTCACAGAAATGGAAACTTTTAAGTGATGGCCCTCGCAGAGAGATACCTCAATGGATGGCGAGGAAAATTCGTACTATCCGTCCCAGGTTTCCACCAAGAAAGATTGATGTAGCTGAAGCGTTGAGCTCAAAGTTCAGATCTTTGGACTTGCCCAAGCCTAATGAAGTATGGTCTATAGCTCAGGAAAAGCCAAAGGAGGGTGATACACTTATTGAGCATGTGATTGAGAAGGAAACAATAGAGAAGAAACGGAAAGCCCTAGAGCATGCTCTTCAAGGGAAGACCATACAATGGCAGAAGACACCAGAACAAACAAACTTAGAGTCAGGAACTGGAACAGGGCGCGAGATTGTGTTTCAAGGCTTCAATTGGGAGAGCTGGAGAAAGCAGTGGTACCTGGATTTAGCTCCTAAAGCTGCTGATTTATCTAAAATTGGGGTAACATCAGTGTGGTTCCCACCACCAACAGAATCTGTTGCTCCTCAAGGTTATATGCCTTCTGACCTTTACAATTTGAACTCATCATATGGTTCTGTGGAAGAACTTAAACACTGCATTGGGGAAATGCATTCTCAAGGTCTTCTGGCCTTGGGAGATGTTGTCTTAAATCATAGATGTGCTCAAAAACAGAGTCCAAATGGCATTTGGAACATTTTTGGTGGGAAGCTTGCTTGGGGGCCTGAAGCAATTGTTTGTGATGATCCAAATTTTCAGGGCTGTGGAAATCCTTCAAGTGGGGATATATTTCATGCAGCACCCAATATTGATCATTCAAAGGACTTCGTAAGAAATGATATAAAGGAGTGGTTAAACTGGCTTCGAAACGATATTGGTTTTGATGGATGGCGCCTTGACTTCGTAAGAGGCTTCTCCGGTACCTATGTAAAAGAATATATTGAAGCTTCGGTTCCTGCATTTGCTATTGGAGAATATTGGGACAGTTTAGCTTATGAAAATGGAAATTTGTGTTACAATCAAGATGCTCACCGGCAAAGAATCGTTAATTGGATCAATGCCACAGGCGGTACTTCCTCGGCATTTGATGTCACAACAAAGGGAATACTCCACTCTGCTCTTCATAACCAATATTGGAGGTTAATAGATCCTCAGGGTAAACCAACTGGAGTTTTGGGATGGTGGCCCTCACGTGCTGTCACATTTTTGGAGAACCATGACACTGGATCAACACAGGGTCACTGGCCATTCCCACGAGATAAGCTTACACAGGGATATGCATACATTTTGACTCATCCTGGAACTCCTGTCATTTTCTATGACCATTTATATGACTTTGGTCTTCATGACATCCTAACTGAGCTAATTGAGGCTCGGAGAAGGGCCGGAATCCATTGCCGGAGCGCTGTAAAGATATACCATGCAAATAATGAAGGTTATGTTGCACAGATAGGTGATACACTAGTAATGAAGCTTGGCCATTTTGATTGGAACCCCTCAAAGGAAAACCATTTGGAGGGGAGCTGGCAGACTTTTGTTGATAAAGGGTCAGATTATAAATTGTGGCTACGACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 ko04973 map00500 map01100 map04973

Pfam Domains

Protein Families

Alpha-amyl_C2 Alpha-amylase

Protein Analysis

972

Amino Acids

109.73

Weight (kDa)

5.83

Isoelectric Point (pI)

47.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003013)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15550 AT5G15550 AT5G15550
fragaria_vesca	FvH4_6g46921 FvH4_6g46921 FvH4_6g46921 FvH4_6g46930 FvH4_6g46930 FvH4_6g46930 FvH4_6g46930 FvH4_6g46930 FvH4_6g46930 FvH4_6g46930
malus_domestica	MD09G1066000.v1.1 MD09G1066100.v1.1 MD17G1058700.v1.1 MD17G1058800.v1.1
prunus_persica	Prupe.3G255400_v2.0.a1 Prupe.3G255500_v2.0.a1
pyrus_communis	pycom111g05550 pycom17g05870
rosa_chinensis	RchiOBHm_Chr2g0165901 RchiOBHm_Chr2g0165911
rosa_laevigata	RLG00000021569
rosa_multiflora	Rmu_co8422767.1_g000001 Rmu_sc0006218.1_g000010
rosa_roxburghii	Rroxscaffold_2G00085310 Rroxscaffold_2G00085320
rosa_rugosa	Rorug02G0519200 Rorug02G0519300
rosa_samantha	Rh2AG584700 Rh2AG584800 Rh2BG596600 Rh2CG567400 Rh2DG606700 Rh2DG606800
rosa_wichuraiana	Rw2G048750 Rw2G048760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2895
Acc65I	GGTACC	2 cut(s)	1776, 2258
AccB1I	GGYRCC	3 cut(s)	1776, 2229, 2258
AccB7I	CCANNNNNTGG	1 cut(s)	1674
AccII	CGCG	1 cut(s)	1728
AciI	CCGC	3 cut(s)	106, 294, 2406
AclWI	GGATC	5 cut(s)	44, 2078, 2399, 2480, 2572
AcoI	YGGCCR	2 cut(s)	2582, 2815
AcsI	RAATTY	7 cut(s)	91, 192, 803, 1010, 1449, 2089, 2344
AcuI	CTGAAG	7 cut(s)	231, 678, 720, 831, 1263, 1518, 2085
AcvI	CACGTG	1 cut(s)	2531
AcyI	GRCGYC	2 cut(s)	109, 2230
AdeI	CACNNNGTG	1 cut(s)	1316
AfaI	GTAC	4 cut(s)	1456, 1778, 2260, 2410
AfeI	AGCGCT	1 cut(s)	2743
AfiI	CCNNNNNNNGG	7 cut(s)	985, 1048, 1580, 1674, 2117, 2839, 2854
AhlI	ACTAGT	1 cut(s)	2800
AjnI	CCWGG	4 cut(s)	99, 1466, 1779, 2635
AjuI	GAANNNNNNNTTGG	8 cut(s)	449, 481, 491, 523, 923, 955, 2371, 2403
Alw21I	GWGCWC	4 cut(s)	73, 978, 1511, 2005
Alw26I	GTCTC	1 cut(s)	1258
Alw44I	GTGCAC	1 cut(s)	69
AlwI	GGATC	5 cut(s)	44, 2078, 2399, 2480, 2572
AlwNI	CAGNNNCTG	6 cut(s)	478, 647, 656, 901, 1715, 1856
Aor51HI	AGCGCT	1 cut(s)	2743
ApaLI	GTGCAC	1 cut(s)	69
ApeKI	GCWGC	9 cut(s)	452, 478, 638, 650, 653, 662, 1163, 1799, 2135
ApoI	RAATTY	7 cut(s)	91, 192, 803, 1010, 1449, 2089, 2344
ArsI	GACNNNNNNTTYG	4 cut(s)	1691, 1723, 1999, 2031
AseI	ATTAAT	1 cut(s)	287
Asp700I	GAANNNNTTC	3 cut(s)	130, 152, 2110
Asp718I	GGTACC	2 cut(s)	1776, 2258
AspLEI	GCGC	4 cut(s)	1180, 1728, 2232, 2744
AspS9I	GGNCC	6 cut(s)	316, 949, 1412, 2060, 2523, 2721
AsuHPI	GGTGA	5 cut(s)	35, 1328, 1595, 2360, 2804
AsuII	TTCGAA	2 cut(s)	134, 2203
AxyI	CCTNAGG	1 cut(s)	2490
BaeGI	GKGCMC	1 cut(s)	73
BaeI	ACNNNNGTAYC	4 cut(s)	2250, 2283, 2787, 2820
BalI	TGGCCA	2 cut(s)	2584, 2817
BanI	GGYRCC	3 cut(s)	1776, 2229, 2258
BanII	GRGCYC	2 cut(s)	978, 1511
BauI	CACGAG	1 cut(s)	2592
BbrPI	CACGTG	1 cut(s)	2531
BbsI	GAAGAC	4 cut(s)	1670, 1688, 1955, 2672
Bbv12I	GWGCWC	4 cut(s)	73, 978, 1511, 2005
BbvI	GCAGC	9 cut(s)	464, 465, 625, 640, 662, 674, 1150, 1786, 2147
BccI	CCATC	7 cut(s)	477, 851, 1403, 1432, 2216, 2220, 2511
BciT130I	CCWGG	4 cut(s)	101, 1468, 1781, 2637
BclI	TGATCA	1 cut(s)	2149
BcoDI	GTCTC	1 cut(s)	1258
BcuI	ACTAGT	1 cut(s)	2800
BfaI	CTAG	6 cut(s)	297, 324, 611, 1313, 1643, 2801
BfmI	CTRYAG	5 cut(s)	479, 639, 648, 1220, 1557
BfoI	RGCGCY	2 cut(s)	2233, 2745
BglII	AGATCT	1 cut(s)	1520
Bme1390I	CCNGG	4 cut(s)	101, 1468, 1781, 2637
BmgT120I	GGNCC	6 cut(s)	316, 949, 1412, 2060, 2523, 2721
BmiI	GGNNCC	7 cut(s)	1778, 1838, 2061, 2231, 2260, 2292, 2831
BmrFI	CCNGG	4 cut(s)	101, 1468, 1781, 2637
BmsI	GCATC	8 cut(s)	529, 607, 979, 1141, 1183, 1199, 1247, 2353
BoxI	GACNNNNGTC	1 cut(s)	2676
BpiI	GAAGAC	4 cut(s)	1670, 1688, 1955, 2672
BpmI	CTGGAG	3 cut(s)	1025, 1783, 2526
Bpu10I	CCTNAGC	2 cut(s)	984, 1563
Bpu14I	TTCGAA	2 cut(s)	134, 2203
BpuEI	CTTGAG	3 cut(s)	1222, 1851, 1941
BsaAI	YACGTR	1 cut(s)	2531
BsaHI	GRCGYC	2 cut(s)	109, 2230
BsaJI	CCNNGG	4 cut(s)	100, 1466, 1971, 2415
BsaWI	WCCGGW	1 cut(s)	2255
BsaXI	ACNNNNNCTCC	2 cut(s)	1968, 1998
Bsc4I	CCNNNNNNNGG	7 cut(s)	985, 1048, 1580, 1674, 2117, 2839, 2854
Bse118I	RCCGGY	1 cut(s)	2370
Bse21I	CCTNAGG	1 cut(s)	2490
Bse3DI	GCAATG	2 cut(s)	14, 2731
BseBI	CCWGG	4 cut(s)	101, 1468, 1781, 2637
BseDI	CCNNGG	4 cut(s)	100, 1466, 1971, 2415
BseLI	CCNNNNNNNGG	7 cut(s)	985, 1048, 1580, 1674, 2117, 2839, 2854
BseMI	GCAATG	2 cut(s)	14, 2731
BseMII	CTCAG	8 cut(s)	303, 635, 908, 984, 1122, 1577, 2504, 2688
BseRI	GAGGAG	2 cut(s)	1064, 1854
BseSI	GKGCMC	1 cut(s)	73
BseXI	GCAGC	9 cut(s)	464, 465, 625, 640, 662, 674, 1150, 1786, 2147
Bsh1236I	CGCG	1 cut(s)	1728
BshNI	GGYRCC	3 cut(s)	1776, 2229, 2258
BsiHKAI	GWGCWC	4 cut(s)	73, 978, 1511, 2005
BsiSI	CCGG	4 cut(s)	2256, 2371, 2724, 2737
BslFI	GGGAC	3 cut(s)	36, 1449, 2333
BslI	CCNNNNNNNGG	7 cut(s)	985, 1048, 1580, 1674, 2117, 2839, 2854
BsmAI	GTCTC	1 cut(s)	1258
BsmFI	GGGAC	3 cut(s)	36, 1449, 2333
BsmI	GAATGC	2 cut(s)	1180, 1951
Bsp119I	TTCGAA	2 cut(s)	134, 2203
Bsp1286I	GDGCHC	4 cut(s)	73, 978, 1511, 2005
Bsp143I	GATC	9 cut(s)	36, 352, 1226, 1520, 2083, 2149, 2391, 2485, 2564
BspACI	CCGC	3 cut(s)	106, 294, 2406
BspCNI	CTCAG	8 cut(s)	304, 634, 907, 985, 1123, 1576, 2503, 2689
BspFNI	CGCG	1 cut(s)	1728
BspHI	TCATGA	1 cut(s)	2683
BspLI	GGNNCC	7 cut(s)	1778, 1838, 2061, 2231, 2260, 2292, 2831
BspMAI	CTGCAG	4 cut(s)	483, 643, 652, 1224
BspPI	GGATC	5 cut(s)	44, 2078, 2399, 2480, 2572
BspQI	GCTCTTC	2 cut(s)	1659, 2463
BspT104I	TTCGAA	2 cut(s)	134, 2203
BspT107I	GGYRCC	3 cut(s)	1776, 2229, 2258
BsrDI	GCAATG	2 cut(s)	14, 2731
BsrFI	RCCGGY	1 cut(s)	2370
BssAI	RCCGGY	1 cut(s)	2370
BssECI	CCNNGG	4 cut(s)	100, 1466, 1971, 2415
BssMI	GATC	9 cut(s)	36, 352, 1226, 1520, 2083, 2149, 2391, 2485, 2564
BssNI	GRCGYC	2 cut(s)	109, 2230
BssSI	CACGAG	1 cut(s)	2592
BssT1I	CCWWGG	1 cut(s)	1971
Bst2BI	CACGAG	1 cut(s)	2592
Bst2UI	CCWGG	4 cut(s)	101, 1468, 1781, 2637
Bst4CI	ACNGT	3 cut(s)	50, 1352, 2324
Bst6I	CTCTTC	3 cut(s)	489, 1659, 2463
BstACI	GRCGYC	2 cut(s)	109, 2230
BstAPI	GCANNNNNTGC	2 cut(s)	581, 647
BstBAI	YACGTR	1 cut(s)	2531
BstBI	TTCGAA	2 cut(s)	134, 2203
BstC8I	GCNNGC	8 cut(s)	594, 775, 779, 783, 837, 1650, 2052, 2864
BstFNI	CGCG	1 cut(s)	1728
BstH2I	RGCGCY	2 cut(s)	2233, 2745
BstHHI	GCGC	4 cut(s)	1180, 1728, 2232, 2744
BstKTI	GATC	9 cut(s)	39, 355, 1229, 1523, 2086, 2152, 2394, 2488, 2567
BstMAI	GTCTC	1 cut(s)	1258
BstMBI	GATC	9 cut(s)	36, 352, 1226, 1520, 2083, 2149, 2391, 2485, 2564
BstNI	CCWGG	4 cut(s)	101, 1468, 1781, 2637
BstNSI	RCATGY	4 cut(s)	785, 962, 1604, 1652
BstPAI	GACNNNNGTC	1 cut(s)	2676
BstSCI	CCNGG	4 cut(s)	99, 1466, 1779, 2635
BstSFI	CTRYAG	5 cut(s)	479, 639, 648, 1220, 1557
BstSLI	GKGCMC	1 cut(s)	73
BstUI	CGCG	1 cut(s)	1728
BstV1I	GCAGC	9 cut(s)	464, 465, 625, 640, 662, 674, 1150, 1786, 2147
BstV2I	GAAGAC	4 cut(s)	1670, 1688, 1955, 2672
BstX2I	RGATCY	2 cut(s)	1520, 2485
BstXI	CCANNNNNNTGG	2 cut(s)	1174, 2561
BstYI	RGATCY	2 cut(s)	1520, 2485
Bsu36I	CCTNAGG	1 cut(s)	2490
BtsI	GCAGTG	6 cut(s)	54, 561, 1001, 1217, 1778, 1933
Cac8I	GCNNGC	8 cut(s)	594, 775, 779, 783, 837, 1650, 2052, 2864
CaiI	CAGNNNCTG	6 cut(s)	478, 647, 656, 901, 1715, 1856
CciI	TCATGA	1 cut(s)	2683
CfoI	GCGC	4 cut(s)	1180, 1728, 2232, 2744
Cfr10I	RCCGGY	1 cut(s)	2370
Cfr13I	GGNCC	6 cut(s)	316, 949, 1412, 2060, 2523, 2721
CseI	GACGC	1 cut(s)	98
Csp6I	GTAC	4 cut(s)	1455, 1777, 2259, 2409
CviQI	GTAC	4 cut(s)	1455, 1777, 2259, 2409
DinI	GGCGCC	1 cut(s)	2231
DpnI	GATC	9 cut(s)	38, 354, 1228, 1522, 2085, 2151, 2393, 2487, 2566
DpnII	GATC	9 cut(s)	36, 352, 1226, 1520, 2083, 2149, 2391, 2485, 2564
DraIII	CACNNNGTG	1 cut(s)	1316
EaeI	YGGCCR	2 cut(s)	2582, 2815
Eam1104I	CTCTTC	3 cut(s)	489, 1659, 2463
EarI	CTCTTC	3 cut(s)	489, 1659, 2463
Ecl136II	GAGCTC	2 cut(s)	976, 1509
Eco130I	CCWWGG	1 cut(s)	1971
Eco24I	GRGCYC	2 cut(s)	978, 1511
Eco47III	AGCGCT	1 cut(s)	2743
Eco53kI	GAGCTC	2 cut(s)	976, 1509
Eco57I	CTGAAG	7 cut(s)	231, 678, 720, 831, 1263, 1518, 2085
Eco72I	CACGTG	1 cut(s)	2531
Eco81I	CCTNAGG	1 cut(s)	2490
EcoICRI	GAGCTC	2 cut(s)	976, 1509
EcoO109I	RGGNCCY	1 cut(s)	2060
EcoRII	CCWGG	4 cut(s)	99, 1466, 1779, 2635
EcoT14I	CCWWGG	1 cut(s)	1971
EcoT22I	ATGCAT	2 cut(s)	1953, 2620
EcoT38I	GRGCYC	2 cut(s)	978, 1511
EgeI	GGCGCC	1 cut(s)	2231
EheI	GGCGCC	1 cut(s)	2231
ErhI	CCWWGG	1 cut(s)	1971
FalI	AAGNNNNNCTT	4 cut(s)	491, 523, 990, 1022
FaqI	GGGAC	3 cut(s)	36, 1449, 2333
FauNDI	CATATG	1 cut(s)	1909
FbaI	TGATCA	1 cut(s)	2149
FriOI	GRGCYC	2 cut(s)	978, 1511
FspBI	CTAG	6 cut(s)	297, 324, 611, 1313, 1643, 2801
GlaI	GCGC	4 cut(s)	1179, 1727, 2231, 2743
GsuI	CTGGAG	3 cut(s)	1025, 1783, 2526
HaeII	RGCGCY	2 cut(s)	2233, 2745
HapII	CCGG	4 cut(s)	2256, 2371, 2724, 2737
HgaI	GACGC	1 cut(s)	98
HhaI	GCGC	4 cut(s)	1180, 1728, 2232, 2744
Hin1I	GRCGYC	2 cut(s)	109, 2230
Hin6I	GCGC	4 cut(s)	1178, 1726, 2230, 2742
HinP1I	GCGC	4 cut(s)	1178, 1726, 2230, 2742
HincII	GTYRAC	1 cut(s)	1348
HindII	GTYRAC	1 cut(s)	1348
HindIII	AAGCTT	4 cut(s)	2048, 2283, 2600, 2810
HpaI	GTTAAC	1 cut(s)	1348
HpaII	CCGG	4 cut(s)	2256, 2371, 2724, 2737
HphI	GGTGA	5 cut(s)	35, 1328, 1595, 2360, 2804
Hpy166II	GTNNAC	4 cut(s)	71, 1348, 1355, 2498
Hpy188III	TCNNGA	9 cut(s)	183, 249, 611, 1016, 1042, 1565, 1710, 2360, 2684
Hpy8I	GTNNAC	4 cut(s)	71, 1348, 1355, 2498
HpyCH4III	ACNGT	3 cut(s)	50, 1352, 2324
HpyCH4IV	ACGT	2 cut(s)	918, 2530
HpySE526I	ACGT	2 cut(s)	918, 2530
Hsp92I	GRCGYC	2 cut(s)	109, 2230
HspAI	GCGC	4 cut(s)	1178, 1726, 2230, 2742
KasI	GGCGCC	1 cut(s)	2229
KpnI	GGTACC	2 cut(s)	1780, 2262
Ksp22I	TGATCA	1 cut(s)	2149
KspAI	GTTAAC	1 cut(s)	1348
Kzo9I	GATC	9 cut(s)	36, 352, 1226, 1520, 2083, 2149, 2391, 2485, 2564
LguI	GCTCTTC	2 cut(s)	1659, 2463
LmnI	GCTCC	6 cut(s)	981, 1160, 1795, 1867, 2739, 2859
Lsp1109I	GCAGC	9 cut(s)	464, 465, 625, 640, 662, 674, 1150, 1786, 2147
LweI	GCATC	8 cut(s)	529, 607, 979, 1141, 1183, 1199, 1247, 2353
MaeI	CTAG	6 cut(s)	297, 324, 611, 1313, 1643, 2801
MaeII	ACGT	2 cut(s)	918, 2530
MalI	GATC	9 cut(s)	38, 354, 1228, 1522, 2085, 2151, 2393, 2487, 2566
MboI	GATC	9 cut(s)	36, 352, 1226, 1520, 2083, 2149, 2391, 2485, 2564
MfeI	CAATTG	4 cut(s)	356, 717, 1750, 2070
MflI	RGATCY	2 cut(s)	1520, 2485
MhlI	GDGCHC	4 cut(s)	73, 978, 1511, 2005
MlsI	TGGCCA	2 cut(s)	2584, 2817
MluNI	TGGCCA	2 cut(s)	2584, 2817
Mly113I	GGCGCC	1 cut(s)	2230
MlyI	GAGTC	4 cut(s)	1028, 1715, 2023, 2623
MmeI	TCCRAC	2 cut(s)	915, 921
Mox20I	TGGCCA	2 cut(s)	2584, 2817
Mph1103I	ATGCAT	2 cut(s)	1953, 2620
MroXI	GAANNNNTTC	3 cut(s)	130, 152, 2110
MscI	TGGCCA	2 cut(s)	2584, 2817
MslI	CAYNNNNRTG	6 cut(s)	957, 963, 1390, 1831, 1998, 2667
Msp20I	TGGCCA	2 cut(s)	2584, 2817
MspA1I	CMGCKG	2 cut(s)	638, 653
MspI	CCGG	4 cut(s)	2256, 2371, 2724, 2737
MspR9I	CCNGG	4 cut(s)	101, 1468, 1781, 2637
MunI	CAATTG	4 cut(s)	356, 717, 1750, 2070
Mva1269I	GAATGC	2 cut(s)	1180, 1951
MvaI	CCWGG	4 cut(s)	101, 1468, 1781, 2637
MvnI	CGCG	1 cut(s)	1728
NarI	GGCGCC	1 cut(s)	2230
NdeI	CATATG	1 cut(s)	1909
NdeII	GATC	9 cut(s)	36, 352, 1226, 1520, 2083, 2149, 2391, 2485, 2564
NlaIV	GGNNCC	7 cut(s)	1778, 1838, 2061, 2231, 2260, 2292, 2831
NmeAIII	GCCGAG	1 cut(s)	2396
NmuCI	GTSAC	6 cut(s)	218, 694, 914, 2428, 2536, 2576
NsiI	ATGCAT	2 cut(s)	1953, 2620
NspI	RCATGY	4 cut(s)	785, 962, 1604, 1652
NspV	TTCGAA	2 cut(s)	134, 2203
PaeI	GCATGC	2 cut(s)	785, 1652
PagI	TCATGA	1 cut(s)	2683
PciSI	GCTCTTC	2 cut(s)	1659, 2463
PcsI	WCGNNNNNNNCGW	1 cut(s)	1459
PctI	GAATGC	2 cut(s)	1180, 1951
PdmI	GAANNNNTTC	3 cut(s)	130, 152, 2110
PflMI	CCANNNNNTGG	1 cut(s)	1674
PfoI	TCCNGGA	1 cut(s)	2635
PleI	GAGTC	4 cut(s)	1027, 1714, 2022, 2623
PluTI	GGCGCC	1 cut(s)	2233
PmaCI	CACGTG	1 cut(s)	2531
PmlI	CACGTG	1 cut(s)	2531
PpsI	GAGTC	4 cut(s)	1027, 1714, 2022, 2623
Ppu21I	YACGTR	1 cut(s)	2531
PshAI	GACNNNNGTC	1 cut(s)	2676
PshBI	ATTAAT	1 cut(s)	287
PsiI	TTATAA	1 cut(s)	2895
Psp124BI	GAGCTC	2 cut(s)	978, 1511
Psp6I	CCWGG	4 cut(s)	99, 1466, 1779, 2635
PspCI	CACGTG	1 cut(s)	2531
PspGI	CCWGG	4 cut(s)	99, 1466, 1779, 2635
PspN4I	GGNNCC	7 cut(s)	1778, 1838, 2061, 2231, 2260, 2292, 2831
PspPI	GGNCC	6 cut(s)	316, 949, 1412, 2060, 2523, 2721
PstI	CTGCAG	4 cut(s)	483, 643, 652, 1224
PstNI	CAGNNNCTG	6 cut(s)	478, 647, 656, 901, 1715, 1856
PsuI	RGATCY	2 cut(s)	1520, 2485
PvuII	CAGCTG	2 cut(s)	638, 653
RsaI	GTAC	4 cut(s)	1456, 1778, 2260, 2410
RsaNI	GTAC	4 cut(s)	1455, 1777, 2259, 2409
RseI	CAYNNNNRTG	6 cut(s)	957, 963, 1390, 1831, 1998, 2667
SacI	GAGCTC	2 cut(s)	978, 1511
SapI	GCTCTTC	2 cut(s)	1659, 2463
Sau3AI	GATC	9 cut(s)	36, 352, 1226, 1520, 2083, 2149, 2391, 2485, 2564
Sau96I	GGNCC	6 cut(s)	316, 949, 1412, 2060, 2523, 2721
SchI	GAGTC	4 cut(s)	1028, 1715, 2023, 2623
ScrFI	CCNGG	4 cut(s)	101, 1468, 1781, 2637
SduI	GDGCHC	4 cut(s)	73, 978, 1511, 2005
SfaNI	GCATC	8 cut(s)	529, 607, 979, 1141, 1183, 1199, 1247, 2353
SfcI	CTRYAG	5 cut(s)	479, 639, 648, 1220, 1557
SfoI	GGCGCC	1 cut(s)	2231
SfuI	TTCGAA	2 cut(s)	134, 2203
SmiMI	CAYNNNNRTG	6 cut(s)	957, 963, 1390, 1831, 1998, 2667
SmlI	CTYRAG	3 cut(s)	1201, 1866, 1956
SmoI	CTYRAG	3 cut(s)	1201, 1866, 1956
SpeI	ACTAGT	1 cut(s)	2800
SphI	GCATGC	2 cut(s)	785, 1652
SsiI	CCGC	3 cut(s)	106, 294, 2406
SspDI	GGCGCC	1 cut(s)	2229
SspI	AATATT	5 cut(s)	859, 1293, 2146, 2315, 2471
SspMI	CTAG	6 cut(s)	297, 324, 611, 1313, 1643, 2801
SstI	GAGCTC	2 cut(s)	978, 1511
StyD4I	CCNGG	4 cut(s)	99, 1466, 1779, 2635
StyI	CCWWGG	1 cut(s)	1971
TaaI	ACNGT	3 cut(s)	50, 1352, 2324
TaiI	ACGT	2 cut(s)	921, 2533
TaqI	TCGA	3 cut(s)	134, 1362, 2203
TauI	GCSGC	1 cut(s)	109
TseFI	GTSAC	6 cut(s)	218, 694, 914, 2428, 2536, 2576
TseI	GCWGC	9 cut(s)	452, 478, 638, 650, 653, 662, 1163, 1799, 2135
Tsp45I	GTSAC	6 cut(s)	218, 694, 914, 2428, 2536, 2576
TspGWI	ACGGA	2 cut(s)	1451, 1648
Van91I	CCANNNNNTGG	1 cut(s)	1674
VneI	GTGCAC	1 cut(s)	69
VspI	ATTAAT	1 cut(s)	287
XapI	RAATTY	7 cut(s)	91, 192, 803, 1010, 1449, 2089, 2344
XbaI	TCTAGA	1 cut(s)	610
XceI	RCATGY	4 cut(s)	785, 962, 1604, 1652
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2025
XmnI	GAANNNNTTC	3 cut(s)	130, 152, 2110
XspI	CTAG	6 cut(s)	297, 324, 611, 1313, 1643, 2801
Zsp2I	ATGCAT	2 cut(s)	1953, 2620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.