Prupe.3G291400_v2.0.a1

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0007319
Physical Location & Seq
Forward (+)
26123329 .. 26125499
2171 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G291400.1

Sequence Viewer

Length: 363 bp
ATGGACTCTGTGGATACAAGCAAAGGTTTTTTGGAAACAGAATTGGCAGTAAAACATGTTGCAAGGAATGATAATGGAGTTTTGACAATTCGTGAGGAACAACAGCTCTTGTACGGGAACAGTGTAACTTGTCCAACTCCTCAGTCATCTCCCAGTGCAAGTGCAACAAATAGGGGTTCCTTTGACATGATGCGCACTTGTTTCTCTCCAGTTGTGCAATCTCATATTGATGCGCCAAGGGAGCCAATTGGAGATATGTTGCCTAGTCTAAAGCTGCCGCTTGGTCCTGTCATCCCAGCTTCCATGTCACAATGCAAGTCCAGTAAGGATTCTCTCGAAGCCGATTTATTTTATTTCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exo_endo_phos_2 RVT_1

Protein Analysis

121

Amino Acids

13.05

Weight (kDa)

4.99

Isoelectric Point (pI)

56.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 194
AciI CCGC 1 cut(s) 278
AfaI GTAC 1 cut(s) 113
AflIII ACRYGT 1 cut(s) 55
AluBI AGCT 3 cut(s) 106, 274, 299
AluI AGCT 3 cut(s) 106, 274, 299
ApeKI GCWGC 1 cut(s) 274
AspLEI GCGC 2 cut(s) 195, 235
AspS9I GGNCC 1 cut(s) 284
AvaII GGWCC 1 cut(s) 284
BbvI GCAGC 1 cut(s) 261
BciVI GTATCC 1 cut(s) 7
BfaI CTAG 1 cut(s) 264
BfuI GTATCC 1 cut(s) 7
BisI GCNGC 2 cut(s) 275, 278
BlsI GCNGC 2 cut(s) 276, 279
Bme18I GGWCC 1 cut(s) 284
BmgT120I GGNCC 1 cut(s) 284
BmiI GGNNCC 2 cut(s) 178, 243
BmrI ACTGGG 1 cut(s) 147
BmsI GCATC 2 cut(s) 180, 220
BmuI ACTGGG 1 cut(s) 147
BpmI CTGGAG 1 cut(s) 192
BsaJI CCNNGG 1 cut(s) 236
Bse1I ACTGG 3 cut(s) 153, 209, 321
BseDI CCNNGG 1 cut(s) 236
BseGI GGATG 1 cut(s) 291
BseMII CTCAG 1 cut(s) 155
BseNI ACTGG 3 cut(s) 153, 209, 321
BseRI GAGGAG 1 cut(s) 129
BseXI GCAGC 1 cut(s) 261
BseYI CCCAGC 1 cut(s) 295
BspACI CCGC 1 cut(s) 278
BspCNI CTCAG 1 cut(s) 154
BspLI GGNNCC 2 cut(s) 178, 243
BsrI ACTGG 3 cut(s) 153, 209, 321
BssECI CCNNGG 1 cut(s) 236
BssT1I CCWWGG 1 cut(s) 236
Bst4CI ACNGT 1 cut(s) 122
BstDEI CTNAG 1 cut(s) 141
BstF5I GGATG 1 cut(s) 291
BstHHI GCGC 2 cut(s) 195, 235
BstMWI GCNNNNNNNGC 1 cut(s) 241
BstNSI RCATGY 1 cut(s) 59
BstV1I GCAGC 1 cut(s) 261
BsuI GTATCC 1 cut(s) 7
BtsCI GGATG 1 cut(s) 291
BtsIMutI CAGTG 2 cut(s) 127, 160
CfoI GCGC 2 cut(s) 195, 235
Cfr13I GGNCC 1 cut(s) 284
Csp6I GTAC 1 cut(s) 112
CviAII CATG 3 cut(s) 56, 187, 304
CviJI RGCY 5 cut(s) 106, 244, 274, 299, 341
CviKI_1 RGCY 5 cut(s) 106, 244, 274, 299, 341
CviQI GTAC 1 cut(s) 112
DdeI CTNAG 1 cut(s) 141
Eco130I CCWWGG 1 cut(s) 236
Eco47I GGWCC 1 cut(s) 284
EcoT14I CCWWGG 1 cut(s) 236
ErhI CCWWGG 1 cut(s) 236
FaeI CATG 3 cut(s) 59, 190, 307
FaiI YATR 5 cut(s) 57, 188, 225, 257, 305
FatI CATG 3 cut(s) 55, 186, 303
Fnu4HI GCNGC 2 cut(s) 275, 278
FokI GGATG 1 cut(s) 278
Fsp4HI GCNGC 2 cut(s) 275, 278
FspAI RTGCGCAY 1 cut(s) 194
FspBI CTAG 1 cut(s) 264
FspI TGCGCA 1 cut(s) 194
GlaI GCGC 2 cut(s) 194, 234
GluI GCNGC 2 cut(s) 275, 278
GsaI CCCAGC 1 cut(s) 299
GsuI CTGGAG 1 cut(s) 192
HhaI GCGC 2 cut(s) 195, 235
Hin1II CATG 3 cut(s) 59, 190, 307
Hin6I GCGC 2 cut(s) 193, 233
HinP1I GCGC 2 cut(s) 193, 233
HinfI GANTC 2 cut(s) 5, 329
Hpy188III TCNNGA 2 cut(s) 92, 335
HpyCH4III ACNGT 1 cut(s) 122
HpyCH4V TGCA 5 cut(s) 62, 158, 164, 217, 315
HpyF10VI GCNNNNNNNGC 1 cut(s) 241
HpyF3I CTNAG 1 cut(s) 141
Hsp92II CATG 3 cut(s) 59, 190, 307
HspAI GCGC 2 cut(s) 193, 233
LmnI GCTCC 1 cut(s) 241
LpnPI CCDG 5 cut(s) 166, 222, 300, 309, 334
Lsp1109I GCAGC 1 cut(s) 261
LweI GCATC 2 cut(s) 180, 220
MaeI CTAG 1 cut(s) 264
MaeIII GTNAC 2 cut(s) 124, 306
MfeI CAATTG 1 cut(s) 246
MluCI AATT 3 cut(s) 41, 87, 246
MmeI TCCRAC 1 cut(s) 158
MnlI CCTC 2 cut(s) 88, 150
MseI TTAA 1 cut(s) 361
MslI CAYNNNNRTG 1 cut(s) 228
MunI CAATTG 1 cut(s) 246
MwoI GCNNNNNNNGC 1 cut(s) 241
NlaIII CATG 3 cut(s) 59, 190, 307
NlaIV GGNNCC 2 cut(s) 178, 243
NmuCI GTSAC 1 cut(s) 306
NsbI TGCGCA 1 cut(s) 194
NspI RCATGY 1 cut(s) 59
PciI ACATGT 1 cut(s) 55
PfeI GAWTC 1 cut(s) 329
PkrI GCNGC 2 cut(s) 276, 279
PscI ACATGT 1 cut(s) 55
PspFI CCCAGC 1 cut(s) 295
PspN4I GGNNCC 2 cut(s) 178, 243
PspPI GGNCC 1 cut(s) 284
RsaI GTAC 1 cut(s) 113
RsaNI GTAC 1 cut(s) 112
RseI CAYNNNNRTG 1 cut(s) 228
SaqAI TTAA 1 cut(s) 361
SatI GCNGC 2 cut(s) 275, 278
Sau96I GGNCC 1 cut(s) 284
SetI ASST 4 cut(s) 28, 108, 276, 301
SfaNI GCATC 2 cut(s) 180, 220
SinI GGWCC 1 cut(s) 284
SmiMI CAYNNNNRTG 1 cut(s) 228
Sse9I AATT 3 cut(s) 41, 87, 246
SsiI CCGC 1 cut(s) 278
SspMI CTAG 1 cut(s) 264
StyI CCWWGG 1 cut(s) 236
TaaI ACNGT 1 cut(s) 122
TaqI TCGA 1 cut(s) 336
TasI AATT 3 cut(s) 41, 87, 246
TauI GCSGC 1 cut(s) 280
TfiI GAWTC 1 cut(s) 329
Tru1I TTAA 1 cut(s) 361
Tru9I TTAA 1 cut(s) 361
TscAI CASTG 2 cut(s) 127, 160
TseFI GTSAC 1 cut(s) 306
TseI GCWGC 1 cut(s) 274
Tsp45I GTSAC 1 cut(s) 306
TspDTI ATGAA 1 cut(s) 346
TspRI CASTG 2 cut(s) 127, 160
VpaK11BI GGWCC 1 cut(s) 284
XceI RCATGY 1 cut(s) 59
XspI CTAG 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.