Ribonuclease H protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G10010 AT3G10010 AT4G34060 AT4G34060 AT4G34060 AT4G34060 AT4G34060 |
| fragaria_vesca | FvH4_5g29900 FvH4_6g07060 |
| malus_domestica | MD11G1157400.v1.1 |
| prunus_persica | Prupe.3G291400_v2.0.a1 Prupe.6G119100_v2.0.a1 Prupe.6G119100_v2.0.a1 |
| pyrus_communis | pycom11g12760 |
| rosa_chinensis | RchiOBHm_Chr3g0456601 RchiOBHm_Chr3g0456611 |
| rosa_laevigata | RLG00000025288 |
| rosa_multiflora | Rmu_sc0000133.1_g000038 |
| rosa_roxburghii | Rroxscaffold_6G00422590 |
| rosa_rugosa | Rorug03G0014300 |
| rosa_samantha | Rh3AG075100 Rh3BG077000 Rh3CG076600 Rh3DG078600 |
| rosa_wichuraiana | Rw3G006430 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 3487 |
| Acc36I | ACCTGC | 3 cut(s) | 3487, 4063, 4718 |
| Acc65I | GGTACC | 3 cut(s) | 1108, 2032, 3278 |
| AccB1I | GGYRCC | 3 cut(s) | 1108, 2032, 3278 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 893, 4550 |
| AccBSI | CCGCTC | 1 cut(s) | 1868 |
| AccI | GTMKAC | 3 cut(s) | 1485, 2636, 3318 |
| AciI | CCGC | 7 cut(s) | 1287, 1868, 2616, 3544, 4462, 4703, 4756 |
| AclI | AACGTT | 2 cut(s) | 3588, 4614 |
| AclWI | GGATC | 5 cut(s) | 2412, 3079, 3719, 3732, 4325 |
| AcoI | YGGCCR | 2 cut(s) | 3379, 3592 |
| AcsI | RAATTY | 9 cut(s) | 85, 166, 346, 1432, 2513, 4131, 4144, 4371, 4378 |
| AcuI | CTGAAG | 3 cut(s) | 3632, 4256, 4794 |
| AcyI | GRCGYC | 1 cut(s) | 2810 |
| AfeI | AGCGCT | 1 cut(s) | 1770 |
| AflII | CTTAAG | 1 cut(s) | 1978 |
| AflIII | ACRYGT | 3 cut(s) | 472, 2206, 2744 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1492 |
| AhlI | ACTAGT | 1 cut(s) | 2233 |
| AjnI | CCWGG | 5 cut(s) | 210, 2499, 3874, 4413, 4529 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 3790, 3822 |
| AleI | CACNNNNGTG | 1 cut(s) | 1926 |
| Alw21I | GWGCWC | 5 cut(s) | 587, 605, 3068, 4326, 4782 |
| Alw26I | GTCTC | 8 cut(s) | 919, 1802, 2090, 2823, 3185, 3498, 4307, 4630 |
| AlwI | GGATC | 5 cut(s) | 2412, 3079, 3719, 3732, 4325 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1822, 2726 |
| Aor51HI | AGCGCT | 1 cut(s) | 1770 |
| AoxI | GGCC | 7 cut(s) | 914, 947, 3240, 3379, 3592, 3704, 3978 |
| ApoI | RAATTY | 9 cut(s) | 85, 166, 346, 1432, 2513, 4131, 4144, 4371, 4378 |
| AseI | ATTAAT | 1 cut(s) | 2469 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2454, 3645 |
| Asp718I | GGTACC | 3 cut(s) | 1108, 2032, 3278 |
| AspA2I | CCTAGG | 1 cut(s) | 677 |
| AspLEI | GCGC | 3 cut(s) | 572, 1771, 3484 |
| AspS9I | GGNCC | 3 cut(s) | 208, 698, 1961 |
| AsuC2I | CCSGG | 1 cut(s) | 3575 |
| AvaII | GGWCC | 3 cut(s) | 208, 698, 1961 |
| AvrII | CCTAGG | 1 cut(s) | 677 |
| BalI | TGGCCA | 1 cut(s) | 3381 |
| BamHI | GGATCC | 1 cut(s) | 3724 |
| BanI | GGYRCC | 3 cut(s) | 1108, 2032, 3278 |
| BanII | GRGCYC | 2 cut(s) | 587, 4782 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2025, 2057 |
| BbsI | GAAGAC | 6 cut(s) | 273, 889, 1077, 2142, 2904, 4460 |
| Bbv12I | GWGCWC | 5 cut(s) | 587, 605, 3068, 4326, 4782 |
| BceAI | ACGGC | 2 cut(s) | 1823, 4449 |
| BciT130I | CCWGG | 5 cut(s) | 212, 2501, 3876, 4415, 4531 |
| BclI | TGATCA | 2 cut(s) | 189, 742 |
| BcnI | CCSGG | 1 cut(s) | 3575 |
| BcoDI | GTCTC | 8 cut(s) | 919, 1802, 2090, 2823, 3185, 3498, 4307, 4630 |
| BcuI | ACTAGT | 1 cut(s) | 2233 |
| BfmI | CTRYAG | 3 cut(s) | 1667, 2754, 4056 |
| BfoI | RGCGCY | 1 cut(s) | 1772 |
| BfrI | CTTAAG | 1 cut(s) | 1978 |
| BfuAI | ACCTGC | 3 cut(s) | 3487, 4063, 4718 |
| BglII | AGATCT | 2 cut(s) | 4078, 4622 |
| BlnI | CCTAGG | 1 cut(s) | 677 |
| BlpI | GCTNAGC | 1 cut(s) | 829 |
| Bme1390I | CCNGG | 6 cut(s) | 212, 2501, 3575, 3876, 4415, 4531 |
| Bme18I | GGWCC | 3 cut(s) | 208, 698, 1961 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1492 |
| BmgT120I | GGNCC | 3 cut(s) | 208, 698, 1961 |
| BmrFI | CCNGG | 6 cut(s) | 212, 2501, 3575, 3876, 4415, 4531 |
| BmrI | ACTGGG | 2 cut(s) | 196, 3331 |
| BmsI | GCATC | 9 cut(s) | 628, 1344, 1816, 2191, 2478, 2972, 3112, 3660, 4706 |
| BmuI | ACTGGG | 2 cut(s) | 196, 3331 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1669 |
| BpiI | GAAGAC | 6 cut(s) | 273, 889, 1077, 2142, 2904, 4460 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1758, 1790, 2765, 2797 |
| BpmI | CTGGAG | 6 cut(s) | 233, 1007, 2826, 3542, 4443, 4836 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1257 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 829 |
| BpuEI | CTTGAG | 4 cut(s) | 600, 3476, 3520, 3995 |
| BpuMI | CCSGG | 1 cut(s) | 3575 |
| Bsa29I | ATCGAT | 1 cut(s) | 2690 |
| BsaHI | GRCGYC | 1 cut(s) | 2810 |
| BsaI | GGTCTC | 1 cut(s) | 2823 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 1726, 1756, 1854, 1884, 3910, 3940 |
| Bse1I | ACTGG | 7 cut(s) | 202, 1756, 2136, 2720, 3282, 3326, 3855 |
| Bse3DI | GCAATG | 2 cut(s) | 58, 833 |
| BseBI | CCWGG | 5 cut(s) | 212, 2501, 3876, 4415, 4531 |
| BseCI | ATCGAT | 1 cut(s) | 2690 |
| BseMI | GCAATG | 2 cut(s) | 58, 833 |
| BseNI | ACTGG | 7 cut(s) | 202, 1756, 2136, 2720, 3282, 3326, 3855 |
| BseRI | GAGGAG | 7 cut(s) | 47, 1215, 1480, 1483, 1486, 1878, 2747 |
| BseYI | CCCAGC | 2 cut(s) | 566, 4222 |
| BsgI | GTGCAG | 3 cut(s) | 231, 3009, 3850 |
| BshFI | GGCC | 7 cut(s) | 916, 949, 3242, 3381, 3594, 3706, 3980 |
| BshNI | GGYRCC | 3 cut(s) | 1108, 2032, 3278 |
| BshVI | ATCGAT | 1 cut(s) | 2690 |
| BsiHKAI | GWGCWC | 5 cut(s) | 587, 605, 3068, 4326, 4782 |
| BsiSI | CCGG | 2 cut(s) | 3575, 3595 |
| BsiWI | CGTACG | 1 cut(s) | 4600 |
| BslFI | GGGAC | 4 cut(s) | 1550, 1908, 3892, 4567 |
| BsmAI | GTCTC | 8 cut(s) | 919, 1802, 2090, 2823, 3185, 3498, 4307, 4630 |
| BsmBI | CGTCTC | 1 cut(s) | 919 |
| BsmFI | GGGAC | 4 cut(s) | 1550, 1908, 3892, 4567 |
| BsmI | GAATGC | 3 cut(s) | 1050, 1528, 1997 |
| BsnI | GGCC | 7 cut(s) | 916, 949, 3242, 3381, 3594, 3706, 3980 |
| Bso31I | GGTCTC | 1 cut(s) | 2823 |
| Bsp1286I | GDGCHC | 5 cut(s) | 587, 605, 3068, 4326, 4782 |
| Bsp1407I | TGTACA | 1 cut(s) | 2155 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 829 |
| Bsp19I | CCATGG | 2 cut(s) | 1615, 1890 |
| BspACI | CCGC | 7 cut(s) | 1287, 1868, 2616, 3544, 4462, 4703, 4756 |
| BspANI | GGCC | 7 cut(s) | 916, 949, 3242, 3381, 3594, 3706, 3980 |
| BspDI | ATCGAT | 1 cut(s) | 2690 |
| BspHI | TCATGA | 1 cut(s) | 1516 |
| BspMAI | CTGCAG | 3 cut(s) | 1671, 2758, 4060 |
| BspMI | ACCTGC | 3 cut(s) | 3487, 4063, 4718 |
| BspPI | GGATC | 5 cut(s) | 2412, 3079, 3719, 3732, 4325 |
| BspQI | GCTCTTC | 1 cut(s) | 4770 |
| BspT107I | GGYRCC | 3 cut(s) | 1108, 2032, 3278 |
| BspTI | CTTAAG | 1 cut(s) | 1978 |
| BspTNI | GGTCTC | 1 cut(s) | 2823 |
| BsrBI | CCGCTC | 1 cut(s) | 1868 |
| BsrDI | GCAATG | 2 cut(s) | 58, 833 |
| BsrGI | TGTACA | 1 cut(s) | 2155 |
| BsrI | ACTGG | 7 cut(s) | 202, 1756, 2136, 2720, 3282, 3326, 3855 |
| BssNI | GRCGYC | 1 cut(s) | 2810 |
| BssT1I | CCWWGG | 6 cut(s) | 677, 1615, 1890, 2522, 3720, 4809 |
| Bst2UI | CCWGG | 5 cut(s) | 212, 2501, 3876, 4415, 4531 |
| Bst6I | CTCTTC | 6 cut(s) | 917, 929, 2007, 3205, 3630, 4770 |
| BstACI | GRCGYC | 1 cut(s) | 2810 |
| BstAFI | CTTAAG | 1 cut(s) | 1978 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 2210, 3479, 3866 |
| BstAUI | TGTACA | 1 cut(s) | 2155 |
| BstC8I | GCNNGC | 8 cut(s) | 39, 1050, 1528, 2331, 3107, 3240, 3542, 3867 |
| BstDSI | CCRYGG | 2 cut(s) | 1615, 1890 |
| BstEII | GGTNACC | 1 cut(s) | 2186 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 2244, 2526 |
| BstH2I | RGCGCY | 1 cut(s) | 1772 |
| BstHHI | GCGC | 3 cut(s) | 572, 1771, 3484 |
| BstMAI | GTCTC | 8 cut(s) | 919, 1802, 2090, 2823, 3185, 3498, 4307, 4630 |
| BstNI | CCWGG | 5 cut(s) | 212, 2501, 3876, 4415, 4531 |
| BstNSI | RCATGY | 5 cut(s) | 41, 2210, 2748, 3566, 4452 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1669 |
| BstPI | GGTNACC | 1 cut(s) | 2186 |
| BstSCI | CCNGG | 6 cut(s) | 210, 2499, 3573, 3874, 4413, 4529 |
| BstSFI | CTRYAG | 3 cut(s) | 1667, 2754, 4056 |
| BstV2I | GAAGAC | 6 cut(s) | 273, 889, 1077, 2142, 2904, 4460 |
| BstX2I | RGATCY | 3 cut(s) | 3724, 4078, 4622 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 3377, 4421 |
| BstYI | RGATCY | 3 cut(s) | 3724, 4078, 4622 |
| Bsu15I | ATCGAT | 1 cut(s) | 2690 |
| BsuRI | GGCC | 7 cut(s) | 916, 949, 3242, 3381, 3594, 3706, 3980 |
| BsuTUI | ATCGAT | 1 cut(s) | 2690 |
| BtgI | CCRYGG | 2 cut(s) | 1615, 1890 |
| BtsI | GCAGTG | 3 cut(s) | 334, 541, 4096 |
| BtsIMutI | CAGTG | 7 cut(s) | 192, 334, 541, 2129, 3289, 3862, 4096 |
| BveI | ACCTGC | 3 cut(s) | 3487, 4063, 4718 |
| Cac8I | GCNNGC | 8 cut(s) | 39, 1050, 1528, 2331, 3107, 3240, 3542, 3867 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1822, 2726 |
| CciI | TCATGA | 1 cut(s) | 1516 |
| CfoI | GCGC | 3 cut(s) | 572, 1771, 3484 |
| Cfr13I | GGNCC | 3 cut(s) | 208, 698, 1961 |
| ClaI | ATCGAT | 1 cut(s) | 2690 |
| CseI | GACGC | 1 cut(s) | 2799 |
| DraI | TTTAAA | 1 cut(s) | 4149 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1492 |
| EaeI | YGGCCR | 2 cut(s) | 3379, 3592 |
| Eam1104I | CTCTTC | 6 cut(s) | 917, 929, 2007, 3205, 3630, 4770 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1492 |
| EarI | CTCTTC | 6 cut(s) | 917, 929, 2007, 3205, 3630, 4770 |
| Ecl136II | GAGCTC | 2 cut(s) | 585, 4780 |
| Eco130I | CCWWGG | 6 cut(s) | 677, 1615, 1890, 2522, 3720, 4809 |
| Eco24I | GRGCYC | 2 cut(s) | 587, 4782 |
| Eco31I | GGTCTC | 1 cut(s) | 2823 |
| Eco47I | GGWCC | 3 cut(s) | 208, 698, 1961 |
| Eco47III | AGCGCT | 1 cut(s) | 1770 |
| Eco53kI | GAGCTC | 2 cut(s) | 585, 4780 |
| Eco57I | CTGAAG | 3 cut(s) | 3632, 4256, 4794 |
| Eco91I | GGTNACC | 1 cut(s) | 2186 |
| EcoICRI | GAGCTC | 2 cut(s) | 585, 4780 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 2244, 2526 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1961 |
| EcoO65I | GGTNACC | 1 cut(s) | 2186 |
| EcoRII | CCWGG | 5 cut(s) | 210, 2499, 3874, 4413, 4529 |
| EcoT14I | CCWWGG | 6 cut(s) | 677, 1615, 1890, 2522, 3720, 4809 |
| EcoT22I | ATGCAT | 1 cut(s) | 2965 |
| EcoT38I | GRGCYC | 2 cut(s) | 587, 4782 |
| ErhI | CCWWGG | 6 cut(s) | 677, 1615, 1890, 2522, 3720, 4809 |
| Esp3I | CGTCTC | 1 cut(s) | 919 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 857, 889, 1125, 1157 |
| FaqI | GGGAC | 4 cut(s) | 1550, 1908, 3892, 4567 |
| FauNDI | CATATG | 2 cut(s) | 2170, 4182 |
| FbaI | TGATCA | 2 cut(s) | 189, 742 |
| FblI | GTMKAC | 3 cut(s) | 1485, 2636, 3318 |
| FriOI | GRGCYC | 2 cut(s) | 587, 4782 |
| GlaI | GCGC | 3 cut(s) | 571, 1770, 3483 |
| GsaI | CCCAGC | 2 cut(s) | 570, 4226 |
| GsuI | CTGGAG | 6 cut(s) | 233, 1007, 2826, 3542, 4443, 4836 |
| HaeII | RGCGCY | 1 cut(s) | 1772 |
| HaeIII | GGCC | 7 cut(s) | 916, 949, 3242, 3381, 3594, 3706, 3980 |
| HapII | CCGG | 2 cut(s) | 3575, 3595 |
| HgaI | GACGC | 1 cut(s) | 2799 |
| HhaI | GCGC | 3 cut(s) | 572, 1771, 3484 |
| Hin1I | GRCGYC | 1 cut(s) | 2810 |
| Hin6I | GCGC | 3 cut(s) | 570, 1769, 3482 |
| HinP1I | GCGC | 3 cut(s) | 570, 1769, 3482 |
| HincII | GTYRAC | 6 cut(s) | 361, 1138, 1375, 2022, 3732, 4246 |
| HindII | GTYRAC | 6 cut(s) | 361, 1138, 1375, 2022, 3732, 4246 |
| HindIII | AAGCTT | 2 cut(s) | 4238, 4479 |
| HpaI | GTTAAC | 1 cut(s) | 3732 |
| HpaII | CCGG | 2 cut(s) | 3575, 3595 |
| HpyCH4IV | ACGT | 5 cut(s) | 474, 3582, 3588, 4614, 4797 |
| HpySE526I | ACGT | 5 cut(s) | 474, 3582, 3588, 4614, 4797 |
| Hsp92I | GRCGYC | 1 cut(s) | 2810 |
| HspAI | GCGC | 3 cut(s) | 570, 1769, 3482 |
| KpnI | GGTACC | 3 cut(s) | 1112, 2036, 3282 |
| Ksp22I | TGATCA | 2 cut(s) | 189, 742 |
| KspAI | GTTAAC | 1 cut(s) | 3732 |
| LguI | GCTCTTC | 1 cut(s) | 4770 |
| LweI | GCATC | 9 cut(s) | 628, 1344, 1816, 2191, 2478, 2972, 3112, 3660, 4706 |
| MaeII | ACGT | 5 cut(s) | 474, 3582, 3588, 4614, 4797 |
| MaeIII | GTNAC | 9 cut(s) | 281, 538, 723, 1534, 1671, 2186, 2607, 3487, 4091 |
| MbiI | CCGCTC | 1 cut(s) | 1868 |
| MfeI | CAATTG | 2 cut(s) | 288, 660 |
| MflI | RGATCY | 3 cut(s) | 3724, 4078, 4622 |
| MhlI | GDGCHC | 5 cut(s) | 587, 605, 3068, 4326, 4782 |
| MlsI | TGGCCA | 1 cut(s) | 3381 |
| MluNI | TGGCCA | 1 cut(s) | 3381 |
| MlyI | GAGTC | 9 cut(s) | 401, 416, 976, 1585, 2537, 2783, 3305, 3414, 4427 |
| MmeI | TCCRAC | 4 cut(s) | 186, 572, 946, 2667 |
| Mox20I | TGGCCA | 1 cut(s) | 3381 |
| Mph1103I | ATGCAT | 1 cut(s) | 2965 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2454, 3645 |
| MscI | TGGCCA | 1 cut(s) | 3381 |
| MslI | CAYNNNNRTG | 7 cut(s) | 636, 1521, 1926, 2669, 2865, 2992, 4163 |
| Msp20I | TGGCCA | 1 cut(s) | 3381 |
| MspA1I | CMGCKG | 3 cut(s) | 1287, 2107, 4703 |
| MspCI | CTTAAG | 1 cut(s) | 1978 |
| MspI | CCGG | 2 cut(s) | 3575, 3595 |
| MspR9I | CCNGG | 6 cut(s) | 212, 2501, 3575, 3876, 4415, 4531 |
| MunI | CAATTG | 2 cut(s) | 288, 660 |
| Mva1269I | GAATGC | 3 cut(s) | 1050, 1528, 1997 |
| MvaI | CCWGG | 5 cut(s) | 212, 2501, 3876, 4415, 4531 |
| NciI | CCSGG | 1 cut(s) | 3575 |
| NcoI | CCATGG | 2 cut(s) | 1615, 1890 |
| NdeI | CATATG | 2 cut(s) | 2170, 4182 |
| NmeAIII | GCCGAG | 1 cut(s) | 975 |
| NmuCI | GTSAC | 5 cut(s) | 723, 1671, 2607, 3487, 4091 |
| NsiI | ATGCAT | 1 cut(s) | 2965 |
| NspI | RCATGY | 5 cut(s) | 41, 2210, 2748, 3566, 4452 |
| OliI | CACNNNNGTG | 1 cut(s) | 1926 |
| PaeI | GCATGC | 1 cut(s) | 41 |
| PagI | TCATGA | 1 cut(s) | 1516 |
| PaqCI | CACCTGC | 1 cut(s) | 3487 |
| PciI | ACATGT | 2 cut(s) | 2206, 2744 |
| PciSI | GCTCTTC | 1 cut(s) | 4770 |
| PctI | GAATGC | 3 cut(s) | 1050, 1528, 1997 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2454, 3645 |
| Pfl23II | CGTACG | 1 cut(s) | 4600 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 893, 4550 |
| PleI | GAGTC | 9 cut(s) | 400, 416, 976, 1584, 2537, 2782, 3305, 3413, 4426 |
| PpsI | GAGTC | 9 cut(s) | 400, 416, 976, 1584, 2537, 2782, 3305, 3413, 4426 |
| PpuMI | RGGWCCY | 1 cut(s) | 1961 |
| PscI | ACATGT | 2 cut(s) | 2206, 2744 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1669 |
| PshBI | ATTAAT | 1 cut(s) | 2469 |
| Psp124BI | GAGCTC | 2 cut(s) | 587, 4782 |
| Psp1406I | AACGTT | 2 cut(s) | 3588, 4614 |
| Psp5II | RGGWCCY | 1 cut(s) | 1961 |
| Psp6I | CCWGG | 5 cut(s) | 210, 2499, 3874, 4413, 4529 |
| PspEI | GGTNACC | 1 cut(s) | 2186 |
| PspFI | CCCAGC | 2 cut(s) | 566, 4222 |
| PspGI | CCWGG | 5 cut(s) | 210, 2499, 3874, 4413, 4529 |
| PspLI | CGTACG | 1 cut(s) | 4600 |
| PspPI | GGNCC | 3 cut(s) | 208, 698, 1961 |
| PspPPI | RGGWCCY | 1 cut(s) | 1961 |
| PstI | CTGCAG | 3 cut(s) | 1671, 2758, 4060 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1822, 2726 |
| PsuI | RGATCY | 3 cut(s) | 3724, 4078, 4622 |
| PvuII | CAGCTG | 1 cut(s) | 2107 |
| RseI | CAYNNNNRTG | 7 cut(s) | 636, 1521, 1926, 2669, 2865, 2992, 4163 |
| SacI | GAGCTC | 2 cut(s) | 587, 4782 |
| SapI | GCTCTTC | 1 cut(s) | 4770 |
| Sau96I | GGNCC | 3 cut(s) | 208, 698, 1961 |
| SchI | GAGTC | 9 cut(s) | 401, 416, 976, 1585, 2537, 2783, 3305, 3414, 4427 |
| ScrFI | CCNGG | 6 cut(s) | 212, 2501, 3575, 3876, 4415, 4531 |
| SduI | GDGCHC | 5 cut(s) | 587, 605, 3068, 4326, 4782 |
| SfaNI | GCATC | 9 cut(s) | 628, 1344, 1816, 2191, 2478, 2972, 3112, 3660, 4706 |
| SfcI | CTRYAG | 3 cut(s) | 1667, 2754, 4056 |
| SinI | GGWCC | 3 cut(s) | 208, 698, 1961 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 636, 1521, 1926, 2669, 2865, 2992, 4163 |
| SmlI | CTYRAG | 5 cut(s) | 615, 1978, 3455, 3499, 3974 |
| SmoI | CTYRAG | 5 cut(s) | 615, 1978, 3455, 3499, 3974 |
| SpeI | ACTAGT | 1 cut(s) | 2233 |
| SphI | GCATGC | 1 cut(s) | 41 |
| SsiI | CCGC | 7 cut(s) | 1287, 1868, 2616, 3544, 4462, 4703, 4756 |
| SstI | GAGCTC | 2 cut(s) | 587, 4782 |
| StyD4I | CCNGG | 6 cut(s) | 210, 2499, 3573, 3874, 4413, 4529 |
| StyI | CCWWGG | 6 cut(s) | 677, 1615, 1890, 2522, 3720, 4809 |
| TaiI | ACGT | 5 cut(s) | 477, 3585, 3591, 4617, 4800 |
| TaqI | TCGA | 7 cut(s) | 1042, 2690, 3208, 3681, 3709, 4171, 4519 |
| TatI | WGTACW | 3 cut(s) | 1356, 2155, 4676 |
| TauI | GCSGC | 3 cut(s) | 1290, 2618, 3547 |
| TscAI | CASTG | 7 cut(s) | 199, 334, 541, 2136, 3289, 3862, 4096 |
| TseFI | GTSAC | 5 cut(s) | 723, 1671, 2607, 3487, 4091 |
| Tsp45I | GTSAC | 5 cut(s) | 723, 1671, 2607, 3487, 4091 |
| TspGWI | ACGGA | 2 cut(s) | 2479, 3717 |
| TspRI | CASTG | 7 cut(s) | 199, 334, 541, 2136, 3289, 3862, 4096 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 893, 4550 |
| Vha464I | CTTAAG | 1 cut(s) | 1978 |
| VpaK11BI | GGWCC | 3 cut(s) | 208, 698, 1961 |
| VspI | ATTAAT | 1 cut(s) | 2469 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 2244, 2526 |
| XapI | RAATTY | 9 cut(s) | 85, 166, 346, 1432, 2513, 4131, 4144, 4371, 4378 |
| XceI | RCATGY | 5 cut(s) | 41, 2210, 2748, 3566, 4452 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2690 |
| XmaJI | CCTAGG | 1 cut(s) | 677 |
| XmiI | GTMKAC | 3 cut(s) | 1485, 2636, 3318 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2454, 3645 |
| Zsp2I | ATGCAT | 1 cut(s) | 2965 |