RchiOBHm_Chr3g0456601

FES

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0007319
Physical Location & Seq
Forward (+)
6081345 .. 6082076
732 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42342

Sequence Viewer

Length: 588 bp
ATGGCTTTCCAACTCTTCGAAACAAACCACAAATCAACAGTAGTACAGAACATGATGGCACCGATGTCAAAAGTTTACGAGAGGCAGGAGAGACAGCACGTTGGGTCTGAAGACAACAGTGTCATGGAACGGGTTCAGGTTCAGATCCCAGATACTCCTGCAAAGAAAACTCAGAGACAACATTCTAGCGGGATTTCTATGCTTATTGCCCCTACAAATTCTTTAGAGGAAAACAAAGAGAACCCAATTGCAGAGGACTTGTCTGCAATGGACGACGAGGTAGTGGATTGCAGTGGACTTATGGACACGATTTTGGATTCCATTCGTTCCTTGGATTTGAACAAGCCTGTGTGGGAGGAGTGGGAGACTGAGGAATTTGCTTATGGTTATAGGGCCGCATTATTGCAAACAGAAGATCTTGCAAGGGAGGATGAGGAAGTGTTGACATATAATCTTCCATGTTCTCAGTCATCTTCCAATACCGAAAATCCTGAAAATCACAGTTGCGGTTTTGGCAGCATAGAGGGTTCTTTCATGCCAGTTGTGCAACCTGGTTATGCTGCTGAATCCATGTCACAATGTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Perm-CXXC RRM_DME

Protein Analysis

195

Amino Acids

21.91

Weight (kDa)

4.38

Isoelectric Point (pI)

54.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 119
AccB1I GGYRCC 1 cut(s) 58
AciI CCGC 3 cut(s) 189, 396, 507
AclWI GGATC 1 cut(s) 139
AcsI RAATTY 2 cut(s) 217, 374
AcuI CTGAAG 1 cut(s) 129
AfaI GTAC 1 cut(s) 45
AgsI TTSAA 1 cut(s) 340
AjnI CCWGG 1 cut(s) 550
Alw26I GTCTC 3 cut(s) 85, 169, 359
AlwI GGATC 1 cut(s) 139
AoxI GGCC 1 cut(s) 393
ApeKI GCWGC 2 cut(s) 516, 560
ApoI RAATTY 2 cut(s) 217, 374
Asp700I GAANNNNTTC 1 cut(s) 132
AspS9I GGNCC 1 cut(s) 393
AsuII TTCGAA 1 cut(s) 18
BanI GGYRCC 1 cut(s) 58
BbsI GAAGAC 1 cut(s) 117
BbvI GCAGC 2 cut(s) 528, 547
BccI CCATC 1 cut(s) 49
BciT130I CCWGG 1 cut(s) 552
BcoDI GTCTC 3 cut(s) 85, 169, 359
BfaI CTAG 1 cut(s) 186
BglII AGATCT 1 cut(s) 415
BisI GCNGC 3 cut(s) 396, 517, 561
BlsI GCNGC 3 cut(s) 397, 518, 562
Bme1390I CCNGG 1 cut(s) 552
BmgT120I GGNCC 1 cut(s) 393
BmiI GGNNCC 1 cut(s) 60
BmrFI CCNGG 1 cut(s) 552
BpiI GAAGAC 1 cut(s) 117
Bpu14I TTCGAA 1 cut(s) 18
BsaJI CCNNGG 1 cut(s) 330
Bse1I ACTGG 1 cut(s) 539
Bse3DI GCAATG 1 cut(s) 273
BseBI CCWGG 1 cut(s) 552
BseDI CCNNGG 1 cut(s) 330
BseGI GGATG 1 cut(s) 436
BseMI GCAATG 1 cut(s) 273
BseMII CTCAG 3 cut(s) 185, 360, 479
BseNI ACTGG 1 cut(s) 539
BseRI GAGGAG 1 cut(s) 371
BseXI GCAGC 2 cut(s) 528, 547
BshFI GGCC 1 cut(s) 395
BshNI GGYRCC 1 cut(s) 58
BsmAI GTCTC 3 cut(s) 85, 169, 359
BsnI GGCC 1 cut(s) 395
Bsp119I TTCGAA 1 cut(s) 18
Bsp143I GATC 2 cut(s) 144, 415
BspACI CCGC 3 cut(s) 189, 396, 507
BspANI GGCC 1 cut(s) 395
BspCNI CTCAG 3 cut(s) 184, 361, 478
BspLI GGNNCC 1 cut(s) 60
BspPI GGATC 1 cut(s) 139
BspT104I TTCGAA 1 cut(s) 18
BspT107I GGYRCC 1 cut(s) 58
BsrDI GCAATG 1 cut(s) 273
BsrI ACTGG 1 cut(s) 539
BssECI CCNNGG 1 cut(s) 330
BssMI GATC 2 cut(s) 144, 415
BssT1I CCWWGG 1 cut(s) 330
Bst2UI CCWGG 1 cut(s) 552
Bst4CI ACNGT 3 cut(s) 40, 119, 503
Bst6I CTCTTC 1 cut(s) 20
BstBI TTCGAA 1 cut(s) 18
BstDEI CTNAG 3 cut(s) 171, 369, 465
BstF5I GGATG 1 cut(s) 436
BstKTI GATC 2 cut(s) 147, 418
BstMAI GTCTC 3 cut(s) 85, 169, 359
BstMBI GATC 2 cut(s) 144, 415
BstMWI GCNNNNNNNGC 2 cut(s) 513, 544
BstNI CCWGG 1 cut(s) 552
BstSCI CCNGG 1 cut(s) 550
BstV1I GCAGC 2 cut(s) 528, 547
BstV2I GAAGAC 1 cut(s) 117
BstX2I RGATCY 2 cut(s) 144, 415
BstYI RGATCY 2 cut(s) 144, 415
BsuRI GGCC 1 cut(s) 395
BtsCI GGATG 1 cut(s) 436
BtsI GCAGTG 1 cut(s) 298
BtsIMutI CAGTG 2 cut(s) 124, 298
Cfr13I GGNCC 1 cut(s) 393
CsiI ACCWGGT 1 cut(s) 550
Csp6I GTAC 1 cut(s) 44
CviAII CATG 5 cut(s) 52, 124, 459, 535, 571
CviJI RGCY 3 cut(s) 5, 346, 395
CviKI_1 RGCY 3 cut(s) 5, 346, 395
CviQI GTAC 1 cut(s) 44
DdeI CTNAG 3 cut(s) 171, 369, 465
DpnI GATC 2 cut(s) 146, 417
DpnII GATC 2 cut(s) 144, 415
DrdI GACNNNNNNGTC 1 cut(s) 119
DseDI GACNNNNNNGTC 1 cut(s) 119
Eam1104I CTCTTC 1 cut(s) 20
EarI CTCTTC 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 330
Eco57I CTGAAG 1 cut(s) 129
EcoRII CCWGG 1 cut(s) 550
EcoT14I CCWWGG 1 cut(s) 330
ErhI CCWWGG 1 cut(s) 330
FaeI CATG 5 cut(s) 55, 127, 462, 538, 574
FatI CATG 5 cut(s) 51, 123, 458, 534, 570
FauI CCCGC 1 cut(s) 182
Fnu4HI GCNGC 3 cut(s) 396, 517, 561
FokI GGATG 1 cut(s) 443
Fsp4HI GCNGC 3 cut(s) 396, 517, 561
FspBI CTAG 1 cut(s) 186
GluI GCNGC 3 cut(s) 396, 517, 561
HaeIII GGCC 1 cut(s) 395
Hin1II CATG 5 cut(s) 55, 127, 462, 538, 574
HincII GTYRAC 1 cut(s) 444
HindII GTYRAC 1 cut(s) 444
HinfI GANTC 2 cut(s) 317, 566
Hpy166II GTNNAC 3 cut(s) 76, 296, 444
Hpy188I TCNGA 3 cut(s) 109, 144, 174
Hpy188III TCNNGA 1 cut(s) 491
Hpy8I GTNNAC 3 cut(s) 76, 296, 444
Hpy99I CGWCG 1 cut(s) 278
HpyCH4III ACNGT 3 cut(s) 40, 119, 503
HpyCH4IV ACGT 1 cut(s) 99
HpyCH4V TGCA 7 cut(s) 161, 251, 266, 291, 406, 422, 547
HpyF10VI GCNNNNNNNGC 2 cut(s) 513, 544
HpyF3I CTNAG 3 cut(s) 171, 369, 465
HpySE526I ACGT 1 cut(s) 99
Hsp92II CATG 5 cut(s) 55, 127, 462, 538, 574
Kzo9I GATC 2 cut(s) 144, 415
LpnPI CCDG 9 cut(s) 71, 122, 162, 171, 360, 504, 537, 552, 564
Lsp1109I GCAGC 2 cut(s) 528, 547
MabI ACCWGGT 1 cut(s) 550
MaeI CTAG 1 cut(s) 186
MaeII ACGT 1 cut(s) 99
MaeIII GTNAC 1 cut(s) 573
MalI GATC 2 cut(s) 146, 417
MboI GATC 2 cut(s) 144, 415
MboII GAAGA 5 cut(s) 7, 122, 425, 446, 465
MfeI CAATTG 1 cut(s) 246
MflI RGATCY 2 cut(s) 144, 415
MluCI AATT 3 cut(s) 217, 246, 374
MmeI TCCRAC 1 cut(s) 34
MnlI CCTC 9 cut(s) 75, 220, 247, 271, 349, 364, 421, 427, 517
MroXI GAANNNNTTC 1 cut(s) 132
MspR9I CCNGG 1 cut(s) 552
MunI CAATTG 1 cut(s) 246
MvaI CCWGG 1 cut(s) 552
MwoI GCNNNNNNNGC 2 cut(s) 513, 544
NdeII GATC 2 cut(s) 144, 415
NlaIII CATG 5 cut(s) 55, 127, 462, 538, 574
NlaIV GGNNCC 1 cut(s) 60
NmuCI GTSAC 1 cut(s) 573
NspV TTCGAA 1 cut(s) 18
PdmI GAANNNNTTC 1 cut(s) 132
PfeI GAWTC 2 cut(s) 317, 566
PkrI GCNGC 3 cut(s) 397, 518, 562
Psp6I CCWGG 1 cut(s) 550
PspGI CCWGG 1 cut(s) 550
PspN4I GGNNCC 1 cut(s) 60
PspPI GGNCC 1 cut(s) 393
PsuI RGATCY 2 cut(s) 144, 415
RsaI GTAC 1 cut(s) 45
RsaNI GTAC 1 cut(s) 44
SatI GCNGC 3 cut(s) 396, 517, 561
Sau3AI GATC 2 cut(s) 144, 415
Sau96I GGNCC 1 cut(s) 393
ScrFI CCNGG 1 cut(s) 552
SetI ASST 4 cut(s) 102, 141, 282, 553
SexAI ACCWGGT 1 cut(s) 550
SfuI TTCGAA 1 cut(s) 18
Sse9I AATT 3 cut(s) 217, 246, 374
SsiI CCGC 3 cut(s) 189, 396, 507
SspMI CTAG 1 cut(s) 186
StyD4I CCNGG 1 cut(s) 550
StyI CCWWGG 1 cut(s) 330
TaaI ACNGT 3 cut(s) 40, 119, 503
TaiI ACGT 1 cut(s) 102
TaqI TCGA 1 cut(s) 18
TasI AATT 3 cut(s) 217, 246, 374
TatI WGTACW 1 cut(s) 43
TauI GCSGC 1 cut(s) 398
TfiI GAWTC 2 cut(s) 317, 566
TscAI CASTG 2 cut(s) 124, 298
TseFI GTSAC 1 cut(s) 573
TseI GCWGC 2 cut(s) 516, 560
Tsp45I GTSAC 1 cut(s) 573
TspDTI ATGAA 1 cut(s) 523
TspRI CASTG 2 cut(s) 124, 298
XapI RAATTY 2 cut(s) 217, 374
XcmI CCANNNNNNNNNTGG 1 cut(s) 328
XmnI GAANNNNTTC 1 cut(s) 132
XspI CTAG 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.