Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000133.1

Orthogroup ID

OG0007319

Physical Location & Seq

Genomic Coordinates Reverse (-)

176416 .. 177095

Gene Structure 680 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000133.1_g000038.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

atgaagaagcaaggacaaaagaaaactgatgtggttatttgcaataatcatctttcttctgggtatgagtcagtaaatgcagcatcacaatcatatcttgaggacactactaaattagaatatcaaataaaagattgtgaaccgataattgaagaaccagcatcacctcgaccgtcattagcggaaccagaatatgtggaaagagacattgaagatttattccttgatgatccttttaaagagttcgtaacaagaagtccatatatgaatacatttcgagcaagtgatatctcaacactagttccctttatgaccccagaagaagctactttcatccccgctcgtagactaaaagaagtggaccgtttgaggacaaaacactcagtctacgtgattaaagatcaaggccctttatttaaagagctacaactagagagacgtcaccctcatgataatagtccttacctttttgccttgtgcacatcaggtatgaccttgacaaagacataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Perm-CXXC RRM_DME

Protein Analysis

169

Amino Acids

19.49

Weight (kDa)

5.44

Isoelectric Point (pI)

59.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007319)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10010 AT3G10010 AT4G34060 AT4G34060 AT4G34060 AT4G34060 AT4G34060
fragaria_vesca	FvH4_5g29900 FvH4_6g07060
malus_domestica	MD11G1157400.v1.1
prunus_persica	Prupe.3G291400_v2.0.a1 Prupe.6G119100_v2.0.a1 Prupe.6G119100_v2.0.a1
pyrus_communis	pycom11g12760
rosa_chinensis	RchiOBHm_Chr3g0456601 RchiOBHm_Chr3g0456611
rosa_laevigata	RLG00000025288
rosa_multiflora	Rmu_sc0000133.1_g000038
rosa_roxburghii	Rroxscaffold_6G00422590
rosa_rugosa	Rorug03G0014300
rosa_samantha	Rh3AG075100 Rh3BG077000 Rh3CG076600 Rh3DG078600
rosa_wichuraiana	Rw3G006430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	442
AccBSI	CCGCTC	1 cut(s)	341
AccI	GTMKAC	2 cut(s)	346, 387
AciI	CCGC	2 cut(s)	182, 339
AclWI	GGATC	1 cut(s)	224
AcyI	GRCGYC	1 cut(s)	439
AgsI	TTSAA	2 cut(s)	152, 212
AhlI	ACTAGT	1 cut(s)	298
AluBI	AGCT	2 cut(s)	326, 424
AluI	AGCT	2 cut(s)	326, 424
Alw21I	GWGCWC	1 cut(s)	482
Alw26I	GTCTC	2 cut(s)	198, 430
Alw44I	GTGCAC	1 cut(s)	478
AlwI	GGATC	1 cut(s)	224
AoxI	GGCC	1 cut(s)	406
ApaLI	GTGCAC	1 cut(s)	478
ApeKI	GCWGC	1 cut(s)	80
AspS9I	GGNCC	2 cut(s)	361, 407
AsuHPI	GGTGA	2 cut(s)	156, 434
AvaII	GGWCC	1 cut(s)	361
BaeGI	GKGCMC	1 cut(s)	482
Bbv12I	GWGCWC	1 cut(s)	482
BbvI	GCAGC	1 cut(s)	92
BcoDI	GTCTC	2 cut(s)	198, 430
BcuI	ACTAGT	1 cut(s)	298
BfaI	CTAG	2 cut(s)	299, 431
BisI	GCNGC	1 cut(s)	81
BlsI	GCNGC	1 cut(s)	82
Bme18I	GGWCC	1 cut(s)	361
BmgT120I	GGNCC	2 cut(s)	361, 407
BmiI	GGNNCC	1 cut(s)	186
BmsI	GCATC	2 cut(s)	92, 170
BpuEI	CTTGAG	1 cut(s)	119
BsaAI	YACGTR	1 cut(s)	391
BsaHI	GRCGYC	1 cut(s)	439
BseGI	GGATG	1 cut(s)	333
BseMII	CTCAG	1 cut(s)	396
BseSI	GKGCMC	1 cut(s)	482
BseXI	GCAGC	1 cut(s)	92
Bsh1285I	CGRYCG	1 cut(s)	173
BshFI	GGCC	1 cut(s)	408
BsiEI	CGRYCG	1 cut(s)	173
BsiHKAI	GWGCWC	1 cut(s)	482
BsmAI	GTCTC	2 cut(s)	198, 430
BsmBI	CGTCTC	1 cut(s)	430
BsnI	GGCC	1 cut(s)	408
Bsp1286I	GDGCHC	1 cut(s)	482
Bsp143I	GATC	2 cut(s)	229, 400
BspACI	CCGC	2 cut(s)	182, 339
BspANI	GGCC	1 cut(s)	408
BspCNI	CTCAG	1 cut(s)	395
BspHI	TCATGA	1 cut(s)	448
BspLI	GGNNCC	1 cut(s)	186
BspPI	GGATC	1 cut(s)	224
BsrBI	CCGCTC	1 cut(s)	341
BssMI	GATC	2 cut(s)	229, 400
BssNI	GRCGYC	1 cut(s)	439
Bst4CI	ACNGT	2 cut(s)	174, 365
BstACI	GRCGYC	1 cut(s)	439
BstBAI	YACGTR	1 cut(s)	391
BstDEI	CTNAG	1 cut(s)	382
BstF5I	GGATG	1 cut(s)	333
BstKTI	GATC	2 cut(s)	232, 403
BstMAI	GTCTC	2 cut(s)	198, 430
BstMBI	GATC	2 cut(s)	229, 400
BstMCI	CGRYCG	1 cut(s)	173
BstSLI	GKGCMC	1 cut(s)	482
BstV1I	GCAGC	1 cut(s)	92
BsuRI	GGCC	1 cut(s)	408
BtsCI	GGATG	1 cut(s)	333
CciI	TCATGA	1 cut(s)	448
Cfr13I	GGNCC	2 cut(s)	361, 407
CviAII	CATG	1 cut(s)	449
CviJI	RGCY	3 cut(s)	326, 408, 424
CviKI_1	RGCY	3 cut(s)	326, 408, 424
DdeI	CTNAG	1 cut(s)	382
DpnI	GATC	2 cut(s)	231, 402
DpnII	GATC	2 cut(s)	229, 400
DraI	TTTAAA	2 cut(s)	238, 418
Eco32I	GATATC	1 cut(s)	289
Eco47I	GGWCC	1 cut(s)	361
EcoO109I	RGGNCCY	1 cut(s)	407
EcoRV	GATATC	1 cut(s)	289
Esp3I	CGTCTC	1 cut(s)	430
FaeI	CATG	1 cut(s)	452
FatI	CATG	1 cut(s)	448
FauI	CCCGC	1 cut(s)	346
FblI	GTMKAC	2 cut(s)	346, 387
Fnu4HI	GCNGC	1 cut(s)	81
FokI	GGATG	1 cut(s)	320
Fsp4HI	GCNGC	1 cut(s)	81
FspBI	CTAG	2 cut(s)	299, 431
GluI	GCNGC	1 cut(s)	81
HaeIII	GGCC	1 cut(s)	408
Hin1I	GRCGYC	1 cut(s)	439
Hin1II	CATG	1 cut(s)	452
HinfI	GANTC	1 cut(s)	68
HphI	GGTGA	2 cut(s)	156, 434
Hpy166II	GTNNAC	5 cut(s)	140, 347, 361, 388, 480
Hpy188III	TCNNGA	2 cut(s)	98, 449
Hpy8I	GTNNAC	5 cut(s)	140, 347, 361, 388, 480
HpyCH4III	ACNGT	2 cut(s)	174, 365
HpyCH4IV	ACGT	2 cut(s)	390, 439
HpyCH4V	TGCA	3 cut(s)	42, 80, 480
HpyF3I	CTNAG	1 cut(s)	382
HpySE526I	ACGT	2 cut(s)	390, 439
Hsp92I	GRCGYC	1 cut(s)	439
Hsp92II	CATG	1 cut(s)	452
Kzo9I	GATC	2 cut(s)	229, 400
LpnPI	CCDG	5 cut(s)	45, 171, 201, 330, 471
Lsp1109I	GCAGC	1 cut(s)	92
LweI	GCATC	2 cut(s)	92, 170
MaeI	CTAG	2 cut(s)	299, 431
MaeII	ACGT	2 cut(s)	390, 439
MaeIII	GTNAC	2 cut(s)	247, 440
MalI	GATC	2 cut(s)	231, 402
MbiI	CCGCTC	1 cut(s)	341
MboI	GATC	2 cut(s)	229, 400
MboII	GAAGA	5 cut(s)	16, 48, 164, 224, 332
MhlI	GDGCHC	1 cut(s)	482
MluCI	AATT	2 cut(s)	113, 147
MlyI	GAGTC	1 cut(s)	77
MnlI	CCTC	4 cut(s)	94, 177, 363, 456
MseI	TTAA	3 cut(s)	237, 396, 417
MslI	CAYNNNNRTG	1 cut(s)	447
NdeII	GATC	2 cut(s)	229, 400
NlaIII	CATG	1 cut(s)	452
NlaIV	GGNNCC	1 cut(s)	186
NmuCI	GTSAC	1 cut(s)	440
PagI	TCATGA	1 cut(s)	448
PkrI	GCNGC	1 cut(s)	82
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
Ppu21I	YACGTR	1 cut(s)	391
PspN4I	GGNNCC	1 cut(s)	186
PspPI	GGNCC	2 cut(s)	361, 407
RseI	CAYNNNNRTG	1 cut(s)	447
SaqAI	TTAA	3 cut(s)	237, 396, 417
SatI	GCNGC	1 cut(s)	81
Sau3AI	GATC	2 cut(s)	229, 400
Sau96I	GGNCC	2 cut(s)	361, 407
SchI	GAGTC	1 cut(s)	77
SduI	GDGCHC	1 cut(s)	482
SetI	ASST	8 cut(s)	169, 328, 393, 426, 442, 468, 490, 497
SfaNI	GCATC	2 cut(s)	92, 170
SinI	GGWCC	1 cut(s)	361
SmiMI	CAYNNNNRTG	1 cut(s)	447
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
SpeI	ACTAGT	1 cut(s)	298
Sse9I	AATT	2 cut(s)	113, 147
SsiI	CCGC	2 cut(s)	182, 339
SspMI	CTAG	2 cut(s)	299, 431
TaaI	ACNGT	2 cut(s)	174, 365
TaiI	ACGT	2 cut(s)	393, 442
TaqI	TCGA	2 cut(s)	169, 277
TasI	AATT	2 cut(s)	113, 147
Tru1I	TTAA	3 cut(s)	237, 396, 417
Tru9I	TTAA	3 cut(s)	237, 396, 417
TseFI	GTSAC	1 cut(s)	440
TseI	GCWGC	1 cut(s)	80
Tsp45I	GTSAC	1 cut(s)	440
TspDTI	ATGAA	3 cut(s)	17, 281, 322
VneI	GTGCAC	1 cut(s)	478
VpaK11BI	GGWCC	1 cut(s)	361
XmiI	GTMKAC	2 cut(s)	346, 387
XspI	CTAG	2 cut(s)	299, 431
ZraI	GACGTC	1 cut(s)	440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.