FES
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G10010 AT3G10010 AT4G34060 AT4G34060 AT4G34060 AT4G34060 AT4G34060 |
| fragaria_vesca | FvH4_5g29900 FvH4_6g07060 |
| malus_domestica | MD11G1157400.v1.1 |
| prunus_persica | Prupe.3G291400_v2.0.a1 Prupe.6G119100_v2.0.a1 Prupe.6G119100_v2.0.a1 |
| pyrus_communis | pycom11g12760 |
| rosa_chinensis | RchiOBHm_Chr3g0456601 RchiOBHm_Chr3g0456611 |
| rosa_laevigata | RLG00000025288 |
| rosa_multiflora | Rmu_sc0000133.1_g000038 |
| rosa_roxburghii | Rroxscaffold_6G00422590 |
| rosa_rugosa | Rorug03G0014300 |
| rosa_samantha | Rh3AG075100 Rh3BG077000 Rh3CG076600 Rh3DG078600 |
| rosa_wichuraiana | Rw3G006430 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 797 |
| AccB1I | GGYRCC | 1 cut(s) | 109 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 887 |
| AccI | GTMKAC | 4 cut(s) | 18, 1364, 3895, 3951 |
| AccII | CGCG | 1 cut(s) | 4062 |
| AciI | CCGC | 7 cut(s) | 506, 803, 1345, 2678, 2792, 3359, 3571 |
| AclWI | GGATC | 8 cut(s) | 2061, 2760, 3035, 3048, 3233, 3638, 3647, 3698 |
| AcoI | YGGCCR | 5 cut(s) | 3, 2695, 2908, 3020, 3680 |
| AcuI | CTGAAG | 3 cut(s) | 261, 3242, 4089 |
| AcyI | GRCGYC | 2 cut(s) | 794, 1801 |
| AfaI | GTAC | 7 cut(s) | 339, 1692, 2745, 2813, 3056, 3100, 3479 |
| AflIII | ACRYGT | 3 cut(s) | 1741, 2878, 2971 |
| AjnI | CCWGG | 5 cut(s) | 1994, 2442, 3176, 3190, 3208 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 1313, 1345, 1529, 1561, 3106, 3138 |
| AleI | CACNNNNGTG | 2 cut(s) | 1602, 2217 |
| Alw21I | GWGCWC | 1 cut(s) | 1480 |
| Alw26I | GTCTC | 6 cut(s) | 39, 1392, 2854, 3286, 3384, 4107 |
| Alw44I | GTGCAC | 1 cut(s) | 1476 |
| AlwI | GGATC | 8 cut(s) | 2061, 2760, 3035, 3048, 3233, 3638, 3647, 3698 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1489 |
| Ama87I | CYCGRG | 2 cut(s) | 1527, 2771 |
| ApaI | GGGCCC | 1 cut(s) | 1640 |
| ApaLI | GTGCAC | 1 cut(s) | 1476 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2483, 2515 |
| AseI | ATTAAT | 1 cut(s) | 1941 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2961 |
| AspLEI | GCGC | 3 cut(s) | 1106, 3176, 4064 |
| AspS9I | GGNCC | 6 cut(s) | 908, 1117, 1636, 1637, 3194, 3960 |
| AsuC2I | CCSGG | 2 cut(s) | 1957, 2891 |
| AvaI | CYCGRG | 2 cut(s) | 1527, 2771 |
| AvaII | GGWCC | 1 cut(s) | 3960 |
| AxyI | CCTNAGG | 1 cut(s) | 2325 |
| BaeGI | GKGCMC | 2 cut(s) | 1480, 1640 |
| BalI | TGGCCA | 3 cut(s) | 2697, 3022, 3682 |
| BamHI | GGATCC | 1 cut(s) | 3040 |
| BanI | GGYRCC | 1 cut(s) | 109 |
| BanII | GRGCYC | 4 cut(s) | 848, 1640, 2384, 2938 |
| BbsI | GAAGAC | 4 cut(s) | 172, 970, 1086, 2561 |
| Bbv12I | GWGCWC | 1 cut(s) | 1480 |
| BceAI | ACGGC | 3 cut(s) | 3041, 3460, 3793 |
| BciT130I | CCWGG | 5 cut(s) | 1996, 2444, 3178, 3192, 3210 |
| BciVI | GTATCC | 1 cut(s) | 2992 |
| BclI | TGATCA | 2 cut(s) | 727, 2479 |
| BcnI | CCSGG | 2 cut(s) | 1957, 2891 |
| BcoDI | GTCTC | 6 cut(s) | 39, 1392, 2854, 3286, 3384, 4107 |
| BfmI | CTRYAG | 6 cut(s) | 135, 677, 975, 1481, 2242, 2547 |
| BfoI | RGCGCY | 2 cut(s) | 1107, 3177 |
| BfuI | GTATCC | 1 cut(s) | 2992 |
| BglII | AGATCT | 2 cut(s) | 1465, 3400 |
| Bme1390I | CCNGG | 7 cut(s) | 1957, 1996, 2444, 2891, 3178, 3192, 3210 |
| Bme18I | GGWCC | 1 cut(s) | 3960 |
| BmeT110I | CYCGRG | 2 cut(s) | 1527, 2771 |
| BmgT120I | GGNCC | 6 cut(s) | 908, 1117, 1636, 1637, 3194, 3960 |
| BmrFI | CCNGG | 7 cut(s) | 1957, 1996, 2444, 2891, 3178, 3192, 3210 |
| BmrI | ACTGGG | 2 cut(s) | 2378, 2647 |
| BmsI | GCATC | 6 cut(s) | 448, 1726, 2976, 3553, 3689, 3795 |
| BmuI | ACTGGG | 2 cut(s) | 2378, 2647 |
| BpiI | GAAGAC | 4 cut(s) | 172, 970, 1086, 2561 |
| BplI | GAGNNNNNCTC | 8 cut(s) | 424, 456, 835, 867, 1389, 1421, 2246, 2278 |
| BpuEI | CTTGAG | 3 cut(s) | 1406, 3311, 3693 |
| BpuMI | CCSGG | 2 cut(s) | 1957, 2891 |
| BsaBI | GATNNNNATC | 1 cut(s) | 3612 |
| BsaHI | GRCGYC | 2 cut(s) | 794, 1801 |
| BsaI | GGTCTC | 1 cut(s) | 1392 |
| BsaWI | WCCGGW | 4 cut(s) | 643, 722, 2467, 4050 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 533, 563, 1533, 1563, 2503, 2533, 4048, 4078 |
| Bse1I | ACTGG | 4 cut(s) | 2384, 2598, 2642, 3891 |
| Bse21I | CCTNAGG | 1 cut(s) | 2325 |
| Bse3DI | GCAATG | 4 cut(s) | 670, 719, 1759, 2948 |
| Bse8I | GATNNNNATC | 1 cut(s) | 3612 |
| BseBI | CCWGG | 5 cut(s) | 1996, 2444, 3178, 3192, 3210 |
| BseGI | GGATG | 9 cut(s) | 463, 765, 766, 1618, 1965, 2902, 3568, 3613, 4168 |
| BseJI | GATNNNNATC | 1 cut(s) | 3612 |
| BseMI | GCAATG | 4 cut(s) | 670, 719, 1759, 2948 |
| BseMII | CTCAG | 7 cut(s) | 596, 866, 1288, 2190, 2316, 2367, 2810 |
| BseNI | ACTGG | 4 cut(s) | 2384, 2598, 2642, 3891 |
| BseSI | GKGCMC | 2 cut(s) | 1480, 1640 |
| BseYI | CCCAGC | 1 cut(s) | 1748 |
| BsgI | GTGCAG | 1 cut(s) | 3166 |
| Bsh1236I | CGCG | 1 cut(s) | 4062 |
| BshNI | GGYRCC | 1 cut(s) | 109 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1480 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1527, 2771 |
| BsiSI | CCGG | 7 cut(s) | 644, 723, 1957, 2468, 2891, 2911, 4051 |
| BslFI | GGGAC | 8 cut(s) | 201, 1446, 1533, 1545, 1939, 2092, 3862, 3973 |
| BsmAI | GTCTC | 6 cut(s) | 39, 1392, 2854, 3286, 3384, 4107 |
| BsmFI | GGGAC | 8 cut(s) | 201, 1446, 1533, 1545, 1939, 2092, 3862, 3973 |
| BsmI | GAATGC | 2 cut(s) | 1216, 1764 |
| Bso31I | GGTCTC | 1 cut(s) | 1392 |
| BsoBI | CYCGRG | 2 cut(s) | 1527, 2771 |
| Bsp120I | GGGCCC | 1 cut(s) | 1636 |
| Bsp1286I | GDGCHC | 5 cut(s) | 848, 1480, 1640, 2384, 2938 |
| Bsp1407I | TGTACA | 2 cut(s) | 1690, 3098 |
| Bsp19I | CCATGG | 3 cut(s) | 54, 1714, 1759 |
| BspACI | CCGC | 7 cut(s) | 506, 803, 1345, 2678, 2792, 3359, 3571 |
| BspCNI | CTCAG | 7 cut(s) | 595, 865, 1287, 2191, 2317, 2368, 2809 |
| BspFNI | CGCG | 1 cut(s) | 4062 |
| BspMAI | CTGCAG | 2 cut(s) | 681, 1485 |
| BspPI | GGATC | 8 cut(s) | 2061, 2760, 3035, 3048, 3233, 3638, 3647, 3698 |
| BspQI | GCTCTTC | 1 cut(s) | 3261 |
| BspT107I | GGYRCC | 1 cut(s) | 109 |
| BspTNI | GGTCTC | 1 cut(s) | 1392 |
| BsrDI | GCAATG | 4 cut(s) | 670, 719, 1759, 2948 |
| BsrGI | TGTACA | 2 cut(s) | 1690, 3098 |
| BsrI | ACTGG | 4 cut(s) | 2384, 2598, 2642, 3891 |
| BssNAI | GTATAC | 3 cut(s) | 19, 3896, 3952 |
| BssNI | GRCGYC | 2 cut(s) | 794, 1801 |
| BssT1I | CCWWGG | 7 cut(s) | 54, 968, 1134, 1714, 1759, 1972, 3036 |
| Bst1107I | GTATAC | 3 cut(s) | 19, 3896, 3952 |
| Bst2UI | CCWGG | 5 cut(s) | 1996, 2444, 3178, 3192, 3210 |
| Bst4CI | ACNGT | 8 cut(s) | 532, 632, 1793, 2994, 3227, 3280, 3949, 3956 |
| Bst6I | CTCTTC | 3 cut(s) | 492, 1890, 3261 |
| BstACI | GRCGYC | 2 cut(s) | 794, 1801 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 131 |
| BstAUI | TGTACA | 2 cut(s) | 1690, 3098 |
| BstC8I | GCNNGC | 4 cut(s) | 132, 463, 3172, 3183 |
| BstDSI | CCRYGG | 4 cut(s) | 54, 1714, 1759, 3023 |
| BstEII | GGTNACC | 1 cut(s) | 1181 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 135 |
| BstF5I | GGATG | 9 cut(s) | 463, 765, 766, 1618, 1965, 2902, 3568, 3613, 4168 |
| BstFNI | CGCG | 1 cut(s) | 4062 |
| BstH2I | RGCGCY | 2 cut(s) | 1107, 3177 |
| BstHHI | GCGC | 3 cut(s) | 1106, 3176, 4064 |
| BstMAI | GTCTC | 6 cut(s) | 39, 1392, 2854, 3286, 3384, 4107 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 131, 550, 843, 979, 1807, 3182, 3260, 4131, 4140 |
| BstNI | CCWGG | 5 cut(s) | 1996, 2444, 3178, 3192, 3210 |
| BstNSI | RCATGY | 7 cut(s) | 1061, 1317, 1439, 1745, 2882, 2975, 3430 |
| BstPI | GGTNACC | 1 cut(s) | 1181 |
| BstSCI | CCNGG | 7 cut(s) | 1955, 1994, 2442, 2889, 3176, 3190, 3208 |
| BstSFI | CTRYAG | 6 cut(s) | 135, 677, 975, 1481, 2242, 2547 |
| BstSLI | GKGCMC | 2 cut(s) | 1480, 1640 |
| BstUI | CGCG | 1 cut(s) | 4062 |
| BstV2I | GAAGAC | 4 cut(s) | 172, 970, 1086, 2561 |
| BstX2I | RGATCY | 4 cut(s) | 1465, 3040, 3400, 3643 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1114 |
| BstYI | RGATCY | 4 cut(s) | 1465, 3040, 3400, 3643 |
| BstZ17I | GTATAC | 3 cut(s) | 19, 3896, 3952 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2325 |
| BsuI | GTATCC | 1 cut(s) | 2992 |
| BtgI | CCRYGG | 4 cut(s) | 54, 1714, 1759, 3023 |
| BtsCI | GGATG | 9 cut(s) | 463, 765, 766, 1618, 1965, 2902, 3568, 3613, 4168 |
| BtsI | GCAGTG | 1 cut(s) | 1478 |
| BtsIMutI | CAGTG | 4 cut(s) | 1478, 1487, 2353, 2990 |
| Cac8I | GCNNGC | 4 cut(s) | 132, 463, 3172, 3183 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1489 |
| CfoI | GCGC | 3 cut(s) | 1106, 3176, 4064 |
| Cfr13I | GGNCC | 6 cut(s) | 908, 1117, 1636, 1637, 3194, 3960 |
| CseI | GACGC | 2 cut(s) | 1001, 1790 |
| CsiI | ACCWGGT | 1 cut(s) | 2442 |
| Csp6I | GTAC | 7 cut(s) | 338, 1691, 2744, 2812, 3055, 3099, 3478 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1807, 1842 |
| CviQI | GTAC | 7 cut(s) | 338, 1691, 2744, 2812, 3055, 3099, 3478 |
| DraI | TTTAAA | 1 cut(s) | 2475 |
| EaeI | YGGCCR | 5 cut(s) | 3, 2695, 2908, 3020, 3680 |
| Eam1104I | CTCTTC | 3 cut(s) | 492, 1890, 3261 |
| EarI | CTCTTC | 3 cut(s) | 492, 1890, 3261 |
| Eco130I | CCWWGG | 7 cut(s) | 54, 968, 1134, 1714, 1759, 1972, 3036 |
| Eco147I | AGGCCT | 1 cut(s) | 973 |
| Eco24I | GRGCYC | 4 cut(s) | 848, 1640, 2384, 2938 |
| Eco31I | GGTCTC | 1 cut(s) | 1392 |
| Eco32I | GATATC | 1 cut(s) | 1708 |
| Eco47I | GGWCC | 1 cut(s) | 3960 |
| Eco57I | CTGAAG | 3 cut(s) | 261, 3242, 4089 |
| Eco81I | CCTNAGG | 1 cut(s) | 2325 |
| Eco88I | CYCGRG | 2 cut(s) | 1527, 2771 |
| Eco91I | GGTNACC | 1 cut(s) | 1181 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 135 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1636, 1637, 3960 |
| EcoO65I | GGTNACC | 1 cut(s) | 1181 |
| EcoRII | CCWGG | 5 cut(s) | 1994, 2442, 3176, 3190, 3208 |
| EcoRV | GATATC | 1 cut(s) | 1708 |
| EcoT14I | CCWWGG | 7 cut(s) | 54, 968, 1134, 1714, 1759, 1972, 3036 |
| EcoT22I | ATGCAT | 1 cut(s) | 1059 |
| EcoT38I | GRGCYC | 4 cut(s) | 848, 1640, 2384, 2938 |
| ErhI | CCWWGG | 7 cut(s) | 54, 968, 1134, 1714, 1759, 1972, 3036 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 851, 883, 3998, 4030 |
| FaqI | GGGAC | 8 cut(s) | 201, 1446, 1533, 1545, 1939, 2092, 3862, 3973 |
| FauI | CCCGC | 2 cut(s) | 1338, 2799 |
| FbaI | TGATCA | 2 cut(s) | 727, 2479 |
| FblI | GTMKAC | 4 cut(s) | 18, 1364, 3895, 3951 |
| FokI | GGATG | 8 cut(s) | 470, 752, 773, 1605, 1972, 2909, 3575, 3600 |
| FriOI | GRGCYC | 4 cut(s) | 848, 1640, 2384, 2938 |
| GlaI | GCGC | 3 cut(s) | 1105, 3175, 4063 |
| GsaI | CCCAGC | 1 cut(s) | 1752 |
| HaeII | RGCGCY | 2 cut(s) | 1107, 3177 |
| HapII | CCGG | 7 cut(s) | 644, 723, 1957, 2468, 2891, 2911, 4051 |
| HgaI | GACGC | 2 cut(s) | 1001, 1790 |
| HhaI | GCGC | 3 cut(s) | 1106, 3176, 4064 |
| Hin1I | GRCGYC | 2 cut(s) | 794, 1801 |
| Hin6I | GCGC | 3 cut(s) | 1104, 3174, 4062 |
| HinP1I | GCGC | 3 cut(s) | 1104, 3174, 4062 |
| HincII | GTYRAC | 4 cut(s) | 1365, 1723, 2295, 3945 |
| HindII | GTYRAC | 4 cut(s) | 1365, 1723, 2295, 3945 |
| HindIII | AAGCTT | 1 cut(s) | 3922 |
| HpaI | GTTAAC | 2 cut(s) | 1723, 3945 |
| HpaII | CCGG | 7 cut(s) | 644, 723, 1957, 2468, 2891, 2911, 4051 |
| Hpy99I | CGWCG | 1 cut(s) | 2515 |
| HpyCH4III | ACNGT | 8 cut(s) | 532, 632, 1793, 2994, 3227, 3280, 3949, 3956 |
| HpyCH4IV | ACGT | 2 cut(s) | 794, 4092 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 131, 550, 843, 979, 1807, 3182, 3260, 4131, 4140 |
| HpySE526I | ACGT | 2 cut(s) | 794, 4092 |
| Hsp92I | GRCGYC | 2 cut(s) | 794, 1801 |
| HspAI | GCGC | 3 cut(s) | 1104, 3174, 4062 |
| Ksp22I | TGATCA | 2 cut(s) | 727, 2479 |
| KspAI | GTTAAC | 2 cut(s) | 1723, 3945 |
| LguI | GCTCTTC | 1 cut(s) | 3261 |
| LweI | GCATC | 6 cut(s) | 448, 1726, 2976, 3553, 3689, 3795 |
| MabI | ACCWGGT | 1 cut(s) | 2442 |
| MaeII | ACGT | 2 cut(s) | 794, 4092 |
| MaeIII | GTNAC | 9 cut(s) | 1129, 1181, 1253, 1418, 1549, 2079, 2149, 2208, 2803 |
| MfeI | CAATTG | 2 cut(s) | 306, 3992 |
| MflI | RGATCY | 4 cut(s) | 1465, 3040, 3400, 3643 |
| MhlI | GDGCHC | 5 cut(s) | 848, 1480, 1640, 2384, 2938 |
| MlsI | TGGCCA | 3 cut(s) | 2697, 3022, 3682 |
| MluNI | TGGCCA | 3 cut(s) | 2697, 3022, 3682 |
| MlyI | GAGTC | 7 cut(s) | 1222, 2009, 2264, 3299, 3622, 3722, 3940 |
| MmeI | TCCRAC | 7 cut(s) | 390, 2005, 2031, 2139, 2146, 2899, 2976 |
| Mox20I | TGGCCA | 3 cut(s) | 2697, 3022, 3682 |
| Mph1103I | ATGCAT | 1 cut(s) | 1059 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2961 |
| MscI | TGGCCA | 3 cut(s) | 2697, 3022, 3682 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1602, 2141, 2217 |
| Msp20I | TGGCCA | 3 cut(s) | 2697, 3022, 3682 |
| MspI | CCGG | 7 cut(s) | 644, 723, 1957, 2468, 2891, 2911, 4051 |
| MspR9I | CCNGG | 7 cut(s) | 1957, 1996, 2444, 2891, 3178, 3192, 3210 |
| MunI | CAATTG | 2 cut(s) | 306, 3992 |
| Mva1269I | GAATGC | 2 cut(s) | 1216, 1764 |
| MvaI | CCWGG | 5 cut(s) | 1996, 2444, 3178, 3192, 3210 |
| MvnI | CGCG | 1 cut(s) | 4062 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 131, 550, 843, 979, 1807, 3182, 3260, 4131, 4140 |
| NciI | CCSGG | 2 cut(s) | 1957, 2891 |
| NcoI | CCATGG | 3 cut(s) | 54, 1714, 1759 |
| NmeAIII | GCCGAG | 1 cut(s) | 1111 |
| NmuCI | GTSAC | 7 cut(s) | 1129, 1181, 1253, 1418, 1549, 2079, 2149 |
| NsiI | ATGCAT | 1 cut(s) | 1059 |
| NspI | RCATGY | 7 cut(s) | 1061, 1317, 1439, 1745, 2882, 2975, 3430 |
| OliI | CACNNNNGTG | 2 cut(s) | 1602, 2217 |
| PaeR7I | CTCGAG | 1 cut(s) | 2771 |
| PceI | AGGCCT | 1 cut(s) | 973 |
| PciI | ACATGT | 3 cut(s) | 1741, 2878, 2971 |
| PciSI | GCTCTTC | 1 cut(s) | 3261 |
| PctI | GAATGC | 2 cut(s) | 1216, 1764 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2961 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 887 |
| PfoI | TCCNGGA | 1 cut(s) | 1955 |
| PleI | GAGTC | 7 cut(s) | 1222, 2009, 2263, 3299, 3622, 3721, 3939 |
| PpsI | GAGTC | 7 cut(s) | 1222, 2009, 2263, 3299, 3622, 3721, 3939 |
| PpuMI | RGGWCCY | 1 cut(s) | 3960 |
| PscI | ACATGT | 3 cut(s) | 1741, 2878, 2971 |
| PshBI | ATTAAT | 1 cut(s) | 1941 |
| Psp5II | RGGWCCY | 1 cut(s) | 3960 |
| Psp6I | CCWGG | 5 cut(s) | 1994, 2442, 3176, 3190, 3208 |
| PspEI | GGTNACC | 1 cut(s) | 1181 |
| PspFI | CCCAGC | 1 cut(s) | 1748 |
| PspGI | CCWGG | 5 cut(s) | 1994, 2442, 3176, 3190, 3208 |
| PspOMI | GGGCCC | 1 cut(s) | 1636 |
| PspPI | GGNCC | 6 cut(s) | 908, 1117, 1636, 1637, 3194, 3960 |
| PspPPI | RGGWCCY | 1 cut(s) | 3960 |
| PspXI | VCTCGAGB | 1 cut(s) | 2771 |
| PstI | CTGCAG | 2 cut(s) | 681, 1485 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1489 |
| PsuI | RGATCY | 4 cut(s) | 1465, 3040, 3400, 3643 |
| RsaI | GTAC | 7 cut(s) | 339, 1692, 2745, 2813, 3056, 3100, 3479 |
| RsaNI | GTAC | 7 cut(s) | 338, 1691, 2744, 2812, 3055, 3099, 3478 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1602, 2141, 2217 |
| SalI | GTCGAC | 1 cut(s) | 1363 |
| SapI | GCTCTTC | 1 cut(s) | 3261 |
| Sau96I | GGNCC | 6 cut(s) | 908, 1117, 1636, 1637, 3194, 3960 |
| SchI | GAGTC | 7 cut(s) | 1222, 2009, 2264, 3299, 3622, 3722, 3940 |
| ScrFI | CCNGG | 7 cut(s) | 1957, 1996, 2444, 2891, 3178, 3192, 3210 |
| SduI | GDGCHC | 5 cut(s) | 848, 1480, 1640, 2384, 2938 |
| SexAI | ACCWGGT | 1 cut(s) | 2442 |
| SfaNI | GCATC | 6 cut(s) | 448, 1726, 2976, 3553, 3689, 3795 |
| SfcI | CTRYAG | 6 cut(s) | 135, 677, 975, 1481, 2242, 2547 |
| Sfr274I | CTCGAG | 1 cut(s) | 2771 |
| SinI | GGWCC | 1 cut(s) | 3960 |
| SlaI | CTCGAG | 1 cut(s) | 2771 |
| SmiI | ATTTAAAT | 1 cut(s) | 2475 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1602, 2141, 2217 |
| SmlI | CTYRAG | 4 cut(s) | 1385, 2771, 3290, 3708 |
| SmoI | CTYRAG | 4 cut(s) | 1385, 2771, 3290, 3708 |
| SseBI | AGGCCT | 1 cut(s) | 973 |
| SsiI | CCGC | 7 cut(s) | 506, 803, 1345, 2678, 2792, 3359, 3571 |
| SspI | AATATT | 3 cut(s) | 2176, 3468, 3733 |
| StuI | AGGCCT | 1 cut(s) | 973 |
| StyD4I | CCNGG | 7 cut(s) | 1955, 1994, 2442, 2889, 3176, 3190, 3208 |
| StyI | CCWWGG | 7 cut(s) | 54, 968, 1134, 1714, 1759, 1972, 3036 |
| SwaI | ATTTAAAT | 1 cut(s) | 2475 |
| TaaI | ACNGT | 8 cut(s) | 532, 632, 1793, 2994, 3227, 3280, 3949, 3956 |
| TaiI | ACGT | 2 cut(s) | 797, 4095 |
| TatI | WGTACW | 3 cut(s) | 1690, 2743, 3098 |
| TauI | GCSGC | 3 cut(s) | 509, 806, 2681 |
| TscAI | CASTG | 4 cut(s) | 1485, 1494, 2353, 2997 |
| TseFI | GTSAC | 7 cut(s) | 1129, 1181, 1253, 1418, 1549, 2079, 2149 |
| Tsp45I | GTSAC | 7 cut(s) | 1129, 1181, 1253, 1418, 1549, 2079, 2149 |
| TspGWI | ACGGA | 5 cut(s) | 1179, 1272, 1549, 1674, 1951 |
| TspRI | CASTG | 4 cut(s) | 1485, 1494, 2353, 2997 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 887 |
| VneI | GTGCAC | 1 cut(s) | 1476 |
| VpaK11BI | GGWCC | 1 cut(s) | 3960 |
| VspI | ATTAAT | 1 cut(s) | 1941 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 135 |
| XbaI | TCTAGA | 2 cut(s) | 1174, 3631 |
| XceI | RCATGY | 7 cut(s) | 1061, 1317, 1439, 1745, 2882, 2975, 3430 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2162 |
| XhoI | CTCGAG | 1 cut(s) | 2771 |
| XmiI | GTMKAC | 4 cut(s) | 18, 1364, 3895, 3951 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2961 |
| ZraI | GACGTC | 1 cut(s) | 795 |
| Zsp2I | ATGCAT | 1 cut(s) | 1059 |