Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0009984

Physical Location & Seq

Genomic Coordinates Forward (+)

26809478 .. 26811835

Gene Structure 2358 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G306900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGCGGTTGCATCTATGAGTTTCAACCTAGTCGGTGCATTCAGAGGGCTTTCTCTGCGCTCGGGCTCAAGCTCAAGCTCAAGCTCATCGTCGTCGTCCTTCTTCAGGGGCGATTTGGGTTCGCTGCAAGTGGGTCCCAAGCTGTCATTAGTGTCAAACCCCAAGAGATTGGCCTTGACGATTCAAAACGCGCACAAGAAAGGAGCTGGGAGTACCAAGAACGGTCGCGATTCCCCAGGCCAAAGGCTCGGCGTCAAGATTTTCGGTGACCAGGCTGCCAAGGCTGGCTCCATCATTGTACGCCAGCGTGGCACCAAGTTCCATGCAGGGAAGAATGTGGGGCTTGGCAAGGACCACACCATATTCTCTTTGATTGATGGTTTGGTTAAGTTTGAGAAGTATGGACCTGATAAGAAGAAGGTGAGTGTTTACCCTCAACAAGTGCAGCCTGAGAACCCCAACAGCTACAGGGCTAGAAAGAGGGAGAACTTCAGGCTACAACGGGAACGAAAGAAAGCACGAAAGGAAGGCTACACCCTTCGAAACCAACCTCAGCTAGTACTTGCGTCTGCTGATGCTGCAGATGTCCCTCCAGTTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0010033 GO:0031967 GO:0031975 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L27

Protein Analysis

201

Amino Acids

21.63

Weight (kDa)

10.71

Isoelectric Point (pI)

33.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40950
fragaria_vesca	FvH4_6g53590 FvH4_6g53590
malus_domestica	MD00G1153700.v1.1 MD09G1010200.v1.1 MD17G1000400.v1.1
prunus_persica	Prupe.3G306900_v2.0.a1 Prupe.3G306900_v2.0.a1
pyrus_communis	pycom17g00840
rosa_chinensis	RchiOBHm_Chr2g0175661
rosa_laevigata	RLG00000022346 RLG00000022352
rosa_multiflora	Rmu_sc0000998.1_g000018
rosa_roxburghii	Rroxscaffold_2G00077170
rosa_rugosa	Rorug02G0586900 Rorug02G0587100
rosa_samantha	Rh2AG665800 Rh2BG676900 Rh2CG640200 Rh2DG690800
rosa_wichuraiana	Rw2G054600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	311
AccII	CGCG	2 cut(s)	191, 228
AciI	CCGC	1 cut(s)	5
AcuI	CTGAAG	2 cut(s)	88, 475
AcyI	GRCGYC	1 cut(s)	252
AfaI	GTAC	3 cut(s)	214, 300, 561
AfiI	CCNNNNNNNGG	1 cut(s)	105
AgsI	TTSAA	2 cut(s)	25, 185
AjnI	CCWGG	2 cut(s)	235, 270
AluBI	AGCT	7 cut(s)	72, 78, 84, 142, 206, 465, 556
AluI	AGCT	7 cut(s)	72, 78, 84, 142, 206, 465, 556
Ama87I	CYCGRG	1 cut(s)	61
AoxI	GGCC	2 cut(s)	171, 238
ApeKI	GCWGC	4 cut(s)	124, 275, 445, 578
AspLEI	GCGC	2 cut(s)	60, 193
AspS9I	GGNCC	3 cut(s)	134, 352, 404
AsuHPI	GGTGA	2 cut(s)	278, 433
AsuII	TTCGAA	1 cut(s)	541
AvaI	CYCGRG	1 cut(s)	61
AvaII	GGWCC	3 cut(s)	134, 352, 404
BanI	GGYRCC	1 cut(s)	311
BanII	GRGCYC	1 cut(s)	68
BbvCI	CCTCAGC	1 cut(s)	552
BbvI	GCAGC	4 cut(s)	111, 262, 457, 565
BccI	CCATC	2 cut(s)	299, 371
BciT130I	CCWGG	2 cut(s)	237, 272
BfaI	CTAG	3 cut(s)	29, 474, 557
BfmI	CTRYAG	2 cut(s)	466, 579
BglI	GCCNNNNNGGC	1 cut(s)	309
BisI	GCNGC	4 cut(s)	125, 276, 446, 579
BlsI	GCNGC	4 cut(s)	126, 277, 447, 580
BmcAI	AGTACT	1 cut(s)	561
Bme1390I	CCNGG	2 cut(s)	237, 272
Bme18I	GGWCC	3 cut(s)	134, 352, 404
BmeT110I	CYCGRG	1 cut(s)	61
BmgT120I	GGNCC	3 cut(s)	134, 352, 404
BmiI	GGNNCC	4 cut(s)	135, 136, 289, 313
BmrFI	CCNGG	2 cut(s)	237, 272
BmsI	GCATC	2 cut(s)	20, 565
BpmI	CTGGAG	1 cut(s)	576
Bpu10I	CCTNAGC	1 cut(s)	552
Bpu14I	TTCGAA	1 cut(s)	541
BpuEI	CTTGAG	3 cut(s)	52, 58, 64
BsaHI	GRCGYC	1 cut(s)	252
BsaJI	CCNNGG	2 cut(s)	235, 279
Bsc4I	CCNNNNNNNGG	1 cut(s)	105
Bse1I	ACTGG	1 cut(s)	593
BseBI	CCWGG	2 cut(s)	237, 272
BseDI	CCNNGG	2 cut(s)	235, 279
BseLI	CCNNNNNNNGG	1 cut(s)	105
BseMII	CTCAG	2 cut(s)	441, 566
BseNI	ACTGG	1 cut(s)	593
BseXI	GCAGC	4 cut(s)	111, 262, 457, 565
BseYI	CCCAGC	1 cut(s)	206
BsgI	GTGCAG	1 cut(s)	464
Bsh1236I	CGCG	2 cut(s)	191, 228
Bsh1285I	CGRYCG	1 cut(s)	226
BshFI	GGCC	2 cut(s)	173, 240
BshNI	GGYRCC	1 cut(s)	311
BsiEI	CGRYCG	1 cut(s)	226
BsiHKCI	CYCGRG	1 cut(s)	61
BslFI	GGGAC	2 cut(s)	120, 572
BslI	CCNNNNNNNGG	1 cut(s)	105
BsmFI	GGGAC	2 cut(s)	120, 572
BsmI	GAATGC	1 cut(s)	38
BsnI	GGCC	2 cut(s)	173, 240
BsoBI	CYCGRG	1 cut(s)	61
Bsp119I	TTCGAA	1 cut(s)	541
Bsp1286I	GDGCHC	1 cut(s)	68
Bsp68I	TCGCGA	1 cut(s)	228
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	2 cut(s)	173, 240
BspCNI	CTCAG	2 cut(s)	442, 565
BspFNI	CGCG	2 cut(s)	191, 228
BspLI	GGNNCC	4 cut(s)	135, 136, 289, 313
BspMAI	CTGCAG	1 cut(s)	583
BspT104I	TTCGAA	1 cut(s)	541
BspT107I	GGYRCC	1 cut(s)	311
BsrI	ACTGG	1 cut(s)	593
BssECI	CCNNGG	2 cut(s)	235, 279
BssNI	GRCGYC	1 cut(s)	252
BssT1I	CCWWGG	1 cut(s)	279
Bst2UI	CCWGG	2 cut(s)	237, 272
Bst4CI	ACNGT	1 cut(s)	224
BstACI	GRCGYC	1 cut(s)	252
BstBI	TTCGAA	1 cut(s)	541
BstC8I	GCNNGC	2 cut(s)	286, 305
BstDEI	CTNAG	2 cut(s)	450, 552
BstEII	GGTNACC	1 cut(s)	266
BstENI	CCTNNNNNAGG	1 cut(s)	103
BstFNI	CGCG	2 cut(s)	191, 228
BstHHI	GCGC	2 cut(s)	60, 193
BstMCI	CGRYCG	1 cut(s)	226
BstMWI	GCNNNNNNNGC	4 cut(s)	55, 281, 309, 578
BstNI	CCWGG	2 cut(s)	237, 272
BstPI	GGTNACC	1 cut(s)	266
BstSCI	CCNGG	2 cut(s)	235, 270
BstSFI	CTRYAG	2 cut(s)	466, 579
BstUI	CGCG	2 cut(s)	191, 228
BstV1I	GCAGC	4 cut(s)	111, 262, 457, 565
BstXI	CCANNNNNNTGG	1 cut(s)	169
BsuRI	GGCC	2 cut(s)	173, 240
BtuMI	TCGCGA	1 cut(s)	228
Cac8I	GCNNGC	2 cut(s)	286, 305
CfoI	GCGC	2 cut(s)	60, 193
Cfr13I	GGNCC	3 cut(s)	134, 352, 404
CseI	GACGC	2 cut(s)	241, 555
Csp6I	GTAC	3 cut(s)	213, 299, 560
CviAII	CATG	1 cut(s)	323
CviQI	GTAC	3 cut(s)	213, 299, 560
DdeI	CTNAG	2 cut(s)	450, 552
Eco130I	CCWWGG	1 cut(s)	279
Eco24I	GRGCYC	1 cut(s)	68
Eco47I	GGWCC	3 cut(s)	134, 352, 404
Eco57I	CTGAAG	2 cut(s)	88, 475
Eco88I	CYCGRG	1 cut(s)	61
Eco91I	GGTNACC	1 cut(s)	266
EcoNI	CCTNNNNNAGG	1 cut(s)	103
EcoO109I	RGGNCCY	1 cut(s)	134
EcoO65I	GGTNACC	1 cut(s)	266
EcoRII	CCWGG	2 cut(s)	235, 270
EcoT14I	CCWWGG	1 cut(s)	279
EcoT38I	GRGCYC	1 cut(s)	68
ErhI	CCWWGG	1 cut(s)	279
FaeI	CATG	1 cut(s)	326
FaiI	YATR	4 cut(s)	17, 324, 362, 402
FaqI	GGGAC	2 cut(s)	120, 572
FatI	CATG	1 cut(s)	322
Fnu4HI	GCNGC	4 cut(s)	125, 276, 446, 579
FriOI	GRGCYC	1 cut(s)	68
Fsp4HI	GCNGC	4 cut(s)	125, 276, 446, 579
FspBI	CTAG	3 cut(s)	29, 474, 557
GlaI	GCGC	2 cut(s)	59, 192
GluI	GCNGC	4 cut(s)	125, 276, 446, 579
GsaI	CCCAGC	1 cut(s)	210
GsuI	CTGGAG	1 cut(s)	576
HaeIII	GGCC	2 cut(s)	173, 240
HgaI	GACGC	2 cut(s)	241, 555
HhaI	GCGC	2 cut(s)	60, 193
Hin1I	GRCGYC	1 cut(s)	252
Hin1II	CATG	1 cut(s)	326
Hin6I	GCGC	2 cut(s)	58, 191
HinP1I	GCGC	2 cut(s)	58, 191
HinfI	GANTC	2 cut(s)	181, 230
HphI	GGTGA	2 cut(s)	278, 433
Hpy166II	GTNNAC	1 cut(s)	430
Hpy188I	TCNGA	1 cut(s)	44
Hpy188III	TCNNGA	2 cut(s)	227, 256
Hpy8I	GTNNAC	1 cut(s)	430
Hpy99I	CGWCG	2 cut(s)	94, 97
HpyAV	CCTTC	4 cut(s)	109, 412, 521, 548
HpyCH4III	ACNGT	1 cut(s)	224
HpyCH4V	TGCA	6 cut(s)	11, 38, 127, 326, 445, 581
HpyF10VI	GCNNNNNNNGC	4 cut(s)	55, 281, 309, 578
HpyF3I	CTNAG	2 cut(s)	450, 552
Hsp92I	GRCGYC	1 cut(s)	252
Hsp92II	CATG	1 cut(s)	326
HspAI	GCGC	2 cut(s)	58, 191
KflI	GGGWCCC	1 cut(s)	134
LmnI	GCTCC	2 cut(s)	203, 293
Lsp1109I	GCAGC	4 cut(s)	111, 262, 457, 565
LweI	GCATC	2 cut(s)	20, 565
MaeI	CTAG	3 cut(s)	29, 474, 557
MaeIII	GTNAC	1 cut(s)	266
MboII	GAAGA	3 cut(s)	94, 343, 427
MhlI	GDGCHC	1 cut(s)	68
MnlI	CCTC	5 cut(s)	38, 444, 474, 561, 600
MseI	TTAA	1 cut(s)	387
MspR9I	CCNGG	2 cut(s)	237, 272
Mva1269I	GAATGC	1 cut(s)	38
MvaI	CCWGG	2 cut(s)	237, 272
MvnI	CGCG	2 cut(s)	191, 228
MwoI	GCNNNNNNNGC	4 cut(s)	55, 281, 309, 578
NlaIII	CATG	1 cut(s)	326
NlaIV	GGNNCC	4 cut(s)	135, 136, 289, 313
NmeAIII	GCCGAG	1 cut(s)	228
NmuCI	GTSAC	1 cut(s)	266
NruI	TCGCGA	1 cut(s)	228
NspV	TTCGAA	1 cut(s)	541
PctI	GAATGC	1 cut(s)	38
PfeI	GAWTC	2 cut(s)	181, 230
PkrI	GCNGC	4 cut(s)	126, 277, 447, 580
PpuMI	RGGWCCY	1 cut(s)	134
Psp5II	RGGWCCY	1 cut(s)	134
Psp6I	CCWGG	2 cut(s)	235, 270
PspEI	GGTNACC	1 cut(s)	266
PspFI	CCCAGC	1 cut(s)	206
PspGI	CCWGG	2 cut(s)	235, 270
PspN4I	GGNNCC	4 cut(s)	135, 136, 289, 313
PspPI	GGNCC	3 cut(s)	134, 352, 404
PspPPI	RGGWCCY	1 cut(s)	134
PstI	CTGCAG	1 cut(s)	583
RruI	TCGCGA	1 cut(s)	228
RsaI	GTAC	3 cut(s)	214, 300, 561
RsaNI	GTAC	3 cut(s)	213, 299, 560
SaqAI	TTAA	1 cut(s)	387
SatI	GCNGC	4 cut(s)	125, 276, 446, 579
Sau96I	GGNCC	3 cut(s)	134, 352, 404
ScaI	AGTACT	1 cut(s)	561
ScrFI	CCNGG	2 cut(s)	237, 272
SduI	GDGCHC	1 cut(s)	68
SfaNI	GCATC	2 cut(s)	20, 565
SfcI	CTRYAG	2 cut(s)	466, 579
SfuI	TTCGAA	1 cut(s)	541
SinI	GGWCC	3 cut(s)	134, 352, 404
SmlI	CTYRAG	3 cut(s)	67, 73, 79
SmoI	CTYRAG	3 cut(s)	67, 73, 79
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	3 cut(s)	29, 474, 557
StyD4I	CCNGG	2 cut(s)	235, 270
StyI	CCWWGG	1 cut(s)	279
TaaI	ACNGT	1 cut(s)	224
TaqI	TCGA	1 cut(s)	541
TatI	WGTACW	1 cut(s)	559
TfiI	GAWTC	2 cut(s)	181, 230
Tru1I	TTAA	1 cut(s)	387
Tru9I	TTAA	1 cut(s)	387
TseFI	GTSAC	1 cut(s)	266
TseI	GCWGC	4 cut(s)	124, 275, 445, 578
Tsp45I	GTSAC	1 cut(s)	266
VpaK11BI	GGWCC	3 cut(s)	134, 352, 404
XagI	CCTNNNNNAGG	1 cut(s)	103
XspI	CTAG	3 cut(s)	29, 474, 557
ZrmI	AGTACT	1 cut(s)	561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.