Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000998.1

Orthogroup ID

OG0009984

Physical Location & Seq

Genomic Coordinates Reverse (-)

71915 .. 73031

Gene Structure 1117 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000998.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

atggcggtcgcgtctatgagtttcaacctagtcggagcattcagagggatggctctgagctcaagctcctcaagctcttcctcttcctcctctttcttcagaggtgatttgggctccctacaattgggcccaaagctatccttgtctactactacccaacgcagattgccattgacgattcaaaacgcgcacaagaaaggagctggtagtaccaagaacggtcgcgattccaaaggccaaaggctcggggttaagatttatggtgaccaggtcgccaagcccggctccatcatcatacgtcagcggggcaccaagttccatgcggggaagaatgtggggcttggcaaggaccataccattttctctctgattgatgggttggttaagtttgagaagtatggacctgacaggaagaaggtgagtgtttaccctcgggagatacagcctgaaaatcccaacagctacagggttaggaagagggagaacttcaagctacaacgcgagaaaaagaaagcaagaaaggaaggctatattcttcaaaacaaaccacaactggtgcttgcatctgctgataatggtgcagagaccaatcctctttgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0010033 GO:0031967 GO:0031975 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L27

Protein Analysis

200

Amino Acids

21.9

Weight (kDa)

10.48

Isoelectric Point (pI)

26.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40950
fragaria_vesca	FvH4_6g53590 FvH4_6g53590
malus_domestica	MD00G1153700.v1.1 MD09G1010200.v1.1 MD17G1000400.v1.1
prunus_persica	Prupe.3G306900_v2.0.a1 Prupe.3G306900_v2.0.a1
pyrus_communis	pycom17g00840
rosa_chinensis	RchiOBHm_Chr2g0175661
rosa_laevigata	RLG00000022346 RLG00000022352
rosa_multiflora	Rmu_sc0000998.1_g000018
rosa_roxburghii	Rroxscaffold_2G00077170
rosa_rugosa	Rorug02G0586900 Rorug02G0587100
rosa_samantha	Rh2AG665800 Rh2BG676900 Rh2CG640200 Rh2DG690800
rosa_wichuraiana	Rw2G054600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	308
AccI	GTMKAC	1 cut(s)	146
AccII	CGCG	4 cut(s)	11, 188, 225, 501
AciI	CCGC	3 cut(s)	5, 304, 323
AcuI	CTGAAG	1 cut(s)	82
AfaI	GTAC	1 cut(s)	211
AfiI	CCNNNNNNNGG	1 cut(s)	124
AgsI	TTSAA	4 cut(s)	25, 182, 490, 539
AjnI	CCWGG	1 cut(s)	267
AluBI	AGCT	7 cut(s)	60, 66, 75, 136, 203, 462, 493
AluI	AGCT	7 cut(s)	60, 66, 75, 136, 203, 462, 493
Alw21I	GWGCWC	1 cut(s)	62
Alw26I	GTCTC	1 cut(s)	578
Ama87I	CYCGRG	2 cut(s)	245, 432
AoxI	GGCC	2 cut(s)	127, 235
ApaI	GGGCCC	1 cut(s)	131
AspLEI	GCGC	1 cut(s)	190
AspS9I	GGNCC	4 cut(s)	127, 128, 349, 401
AsuC2I	CCSGG	1 cut(s)	282
AsuHPI	GGTGA	3 cut(s)	116, 275, 430
AvaI	CYCGRG	2 cut(s)	245, 432
AvaII	GGWCC	2 cut(s)	349, 401
BaeGI	GKGCMC	2 cut(s)	131, 311
BanI	GGYRCC	1 cut(s)	308
BanII	GRGCYC	3 cut(s)	62, 116, 131
Bbv12I	GWGCWC	1 cut(s)	62
BccI	CCATC	3 cut(s)	43, 296, 368
BciT130I	CCWGG	1 cut(s)	269
BcnI	CCSGG	1 cut(s)	282
BcoDI	GTCTC	1 cut(s)	578
BfaI	CTAG	1 cut(s)	29
BfmI	CTRYAG	1 cut(s)	463
Bme1390I	CCNGG	2 cut(s)	269, 282
Bme18I	GGWCC	2 cut(s)	349, 401
BmeT110I	CYCGRG	2 cut(s)	245, 432
BmgT120I	GGNCC	4 cut(s)	127, 128, 349, 401
BmiI	GGNNCC	4 cut(s)	115, 129, 286, 310
BmrFI	CCNGG	2 cut(s)	269, 282
BmsI	GCATC	1 cut(s)	572
BpuEI	CTTGAG	2 cut(s)	46, 55
BpuMI	CCSGG	1 cut(s)	282
BsaI	GGTCTC	1 cut(s)	578
BsaJI	CCNNGG	1 cut(s)	431
Bsc4I	CCNNNNNNNGG	1 cut(s)	124
Bse1I	ACTGG	1 cut(s)	558
BseBI	CCWGG	1 cut(s)	269
BseDI	CCNNGG	1 cut(s)	431
BseGI	GGATG	1 cut(s)	54
BseLI	CCNNNNNNNGG	1 cut(s)	124
BseMII	CTCAG	1 cut(s)	47
BseNI	ACTGG	1 cut(s)	558
BseRI	GAGGAG	2 cut(s)	58, 79
BseSI	GKGCMC	2 cut(s)	131, 311
BsgI	GTGCAG	1 cut(s)	600
Bsh1236I	CGCG	4 cut(s)	11, 188, 225, 501
Bsh1285I	CGRYCG	2 cut(s)	9, 223
BshFI	GGCC	2 cut(s)	129, 237
BshNI	GGYRCC	1 cut(s)	308
BsiEI	CGRYCG	2 cut(s)	9, 223
BsiHKAI	GWGCWC	1 cut(s)	62
BsiHKCI	CYCGRG	2 cut(s)	245, 432
BsiSI	CCGG	1 cut(s)	282
BslI	CCNNNNNNNGG	1 cut(s)	124
BsmAI	GTCTC	1 cut(s)	578
BsmI	GAATGC	1 cut(s)	38
BsnI	GGCC	2 cut(s)	129, 237
Bso31I	GGTCTC	1 cut(s)	578
BsoBI	CYCGRG	2 cut(s)	245, 432
Bsp120I	GGGCCC	1 cut(s)	127
Bsp1286I	GDGCHC	4 cut(s)	62, 116, 131, 311
Bsp68I	TCGCGA	1 cut(s)	225
BspACI	CCGC	3 cut(s)	5, 304, 323
BspANI	GGCC	2 cut(s)	129, 237
BspCNI	CTCAG	1 cut(s)	48
BspFNI	CGCG	4 cut(s)	11, 188, 225, 501
BspLI	GGNNCC	4 cut(s)	115, 129, 286, 310
BspQI	GCTCTTC	1 cut(s)	82
BspT107I	GGYRCC	1 cut(s)	308
BspTNI	GGTCTC	1 cut(s)	578
BsrI	ACTGG	1 cut(s)	558
BssECI	CCNNGG	1 cut(s)	431
Bst2UI	CCWGG	1 cut(s)	269
Bst4CI	ACNGT	1 cut(s)	221
Bst6I	CTCTTC	3 cut(s)	82, 88, 470
BstC8I	GCNNGC	1 cut(s)	561
BstDEI	CTNAG	1 cut(s)	56
BstEII	GGTNACC	1 cut(s)	263
BstF5I	GGATG	1 cut(s)	54
BstFNI	CGCG	4 cut(s)	11, 188, 225, 501
BstHHI	GCGC	1 cut(s)	190
BstMAI	GTCTC	1 cut(s)	578
BstMCI	CGRYCG	2 cut(s)	9, 223
BstMWI	GCNNNNNNNGC	1 cut(s)	72
BstNI	CCWGG	1 cut(s)	269
BstPI	GGTNACC	1 cut(s)	263
BstSCI	CCNGG	2 cut(s)	267, 280
BstSFI	CTRYAG	1 cut(s)	463
BstSLI	GKGCMC	2 cut(s)	131, 311
BstUI	CGCG	4 cut(s)	11, 188, 225, 501
BsuRI	GGCC	2 cut(s)	129, 237
BtsCI	GGATG	1 cut(s)	54
BtuMI	TCGCGA	1 cut(s)	225
Cac8I	GCNNGC	1 cut(s)	561
CfoI	GCGC	1 cut(s)	190
Cfr13I	GGNCC	4 cut(s)	127, 128, 349, 401
CsiI	ACCWGGT	1 cut(s)	267
Csp6I	GTAC	1 cut(s)	210
CviAII	CATG	1 cut(s)	320
CviQI	GTAC	1 cut(s)	210
DdeI	CTNAG	1 cut(s)	56
Eam1104I	CTCTTC	3 cut(s)	82, 88, 470
EarI	CTCTTC	3 cut(s)	82, 88, 470
Ecl136II	GAGCTC	1 cut(s)	60
Eco24I	GRGCYC	3 cut(s)	62, 116, 131
Eco31I	GGTCTC	1 cut(s)	578
Eco47I	GGWCC	2 cut(s)	349, 401
Eco53kI	GAGCTC	1 cut(s)	60
Eco57I	CTGAAG	1 cut(s)	82
Eco88I	CYCGRG	2 cut(s)	245, 432
Eco91I	GGTNACC	1 cut(s)	263
EcoICRI	GAGCTC	1 cut(s)	60
EcoO65I	GGTNACC	1 cut(s)	263
EcoRII	CCWGG	1 cut(s)	267
EcoT38I	GRGCYC	3 cut(s)	62, 116, 131
FaeI	CATG	1 cut(s)	323
FaiI	YATR	7 cut(s)	17, 261, 296, 321, 354, 399, 531
FalI	AAGNNNNNCTT	2 cut(s)	125, 157
FatI	CATG	1 cut(s)	319
FauI	CCCGC	2 cut(s)	297, 316
FblI	GTMKAC	1 cut(s)	146
FokI	GGATG	1 cut(s)	61
FriOI	GRGCYC	3 cut(s)	62, 116, 131
FspBI	CTAG	1 cut(s)	29
GlaI	GCGC	1 cut(s)	189
HaeIII	GGCC	2 cut(s)	129, 237
HapII	CCGG	1 cut(s)	282
HhaI	GCGC	1 cut(s)	190
Hin1II	CATG	1 cut(s)	323
Hin6I	GCGC	1 cut(s)	188
HinP1I	GCGC	1 cut(s)	188
HinfI	GANTC	2 cut(s)	178, 227
HpaII	CCGG	1 cut(s)	282
HphI	GGTGA	3 cut(s)	116, 275, 430
Hpy166II	GTNNAC	2 cut(s)	147, 427
Hpy188I	TCNGA	5 cut(s)	35, 44, 57, 101, 369
Hpy188III	TCNNGA	2 cut(s)	224, 434
Hpy8I	GTNNAC	2 cut(s)	147, 427
HpyAV	CCTTC	2 cut(s)	409, 518
HpyCH4III	ACNGT	1 cut(s)	221
HpyCH4IV	ACGT	1 cut(s)	298
HpyCH4V	TGCA	2 cut(s)	563, 581
HpyF10VI	GCNNNNNNNGC	1 cut(s)	72
HpyF3I	CTNAG	1 cut(s)	56
HpySE526I	ACGT	1 cut(s)	298
Hsp92II	CATG	1 cut(s)	323
HspAI	GCGC	1 cut(s)	188
LguI	GCTCTTC	1 cut(s)	82
LmnI	GCTCC	5 cut(s)	35, 71, 119, 200, 290
LpnPI	CCDG	9 cut(s)	189, 254, 281, 295, 394, 417, 451, 459, 539
LweI	GCATC	1 cut(s)	572
MabI	ACCWGGT	1 cut(s)	267
MaeI	CTAG	1 cut(s)	29
MaeII	ACGT	1 cut(s)	298
MaeIII	GTNAC	1 cut(s)	263
MboII	GAAGA	7 cut(s)	69, 75, 88, 340, 424, 487, 527
MfeI	CAATTG	1 cut(s)	122
MhlI	GDGCHC	4 cut(s)	62, 116, 131, 311
MluCI	AATT	1 cut(s)	122
MmeI	TCCRAC	1 cut(s)	13
MnlI	CCTC	9 cut(s)	38, 79, 91, 95, 97, 100, 441, 471, 603
MseI	TTAA	2 cut(s)	252, 384
MspA1I	CMGCKG	1 cut(s)	304
MspI	CCGG	1 cut(s)	282
MspR9I	CCNGG	2 cut(s)	269, 282
MunI	CAATTG	1 cut(s)	122
Mva1269I	GAATGC	1 cut(s)	38
MvaI	CCWGG	1 cut(s)	269
MvnI	CGCG	4 cut(s)	11, 188, 225, 501
MwoI	GCNNNNNNNGC	1 cut(s)	72
NciI	CCSGG	1 cut(s)	282
NlaIII	CATG	1 cut(s)	323
NlaIV	GGNNCC	4 cut(s)	115, 129, 286, 310
NmuCI	GTSAC	1 cut(s)	263
NruI	TCGCGA	1 cut(s)	225
PciSI	GCTCTTC	1 cut(s)	82
PctI	GAATGC	1 cut(s)	38
PfeI	GAWTC	2 cut(s)	178, 227
PflFI	GACNNNGTC	1 cut(s)	269
Psp124BI	GAGCTC	1 cut(s)	62
Psp6I	CCWGG	1 cut(s)	267
PspEI	GGTNACC	1 cut(s)	263
PspGI	CCWGG	1 cut(s)	267
PspN4I	GGNNCC	4 cut(s)	115, 129, 286, 310
PspOMI	GGGCCC	1 cut(s)	127
PspPI	GGNCC	4 cut(s)	127, 128, 349, 401
PsyI	GACNNNGTC	1 cut(s)	269
RruI	TCGCGA	1 cut(s)	225
RsaI	GTAC	1 cut(s)	211
RsaNI	GTAC	1 cut(s)	210
SacI	GAGCTC	1 cut(s)	62
SapI	GCTCTTC	1 cut(s)	82
SaqAI	TTAA	2 cut(s)	252, 384
Sau96I	GGNCC	4 cut(s)	127, 128, 349, 401
ScrFI	CCNGG	2 cut(s)	269, 282
SduI	GDGCHC	4 cut(s)	62, 116, 131, 311
SexAI	ACCWGGT	1 cut(s)	267
SfaNI	GCATC	1 cut(s)	572
SfcI	CTRYAG	1 cut(s)	463
SinI	GGWCC	2 cut(s)	349, 401
SmlI	CTYRAG	2 cut(s)	61, 70
SmoI	CTYRAG	2 cut(s)	61, 70
Sse9I	AATT	1 cut(s)	122
SsiI	CCGC	3 cut(s)	5, 304, 323
SspMI	CTAG	1 cut(s)	29
SstI	GAGCTC	1 cut(s)	62
StyD4I	CCNGG	2 cut(s)	267, 280
TaaI	ACNGT	1 cut(s)	221
TaiI	ACGT	1 cut(s)	301
TasI	AATT	1 cut(s)	122
TfiI	GAWTC	2 cut(s)	178, 227
Tru1I	TTAA	2 cut(s)	252, 384
Tru9I	TTAA	2 cut(s)	252, 384
TseFI	GTSAC	1 cut(s)	263
Tsp45I	GTSAC	1 cut(s)	263
Tth111I	GACNNNGTC	1 cut(s)	269
VpaK11BI	GGWCC	2 cut(s)	349, 401
XmiI	GTMKAC	1 cut(s)	146
XspI	CTAG	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.