Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0009984

Physical Location & Seq

Genomic Coordinates Forward (+)

88069428 .. 88070956

Gene Structure 1529 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG665800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGCGGTCGCGTCTATGAGTTTCAACCTAGTCGGAGCATTCAGAGGGATGGCTCTGAGCTCAAGCTCTTCTTCCTCTTCCTCCTCTTTCTTCAGAGGTGATTTGGGCTCCCTACAATTGGGCCCAAAGCTGTCCTTGTCTACTACTACCCAACGCAGATTGCCATTGACGATTCAAAACGCGCACAAGAAAGGAGCTGGTAGTACCAAGAACGGTCGCGATTCCAAAGGCCAAAGGCTCGGGGTTAAGATTTACGGTGACCAGGTCGCCAAGCCCGGCTCCATCATCATACGTCAGCGGGGCACCAAGTTCCATGCGGGGAAGAATGTGGGGCTTGGCAAGGACCATACCATTTTCTCTCTGATTGATGGGTTGGTTAAGTTTGAGAAGTATGGACCTGACAGGAAGAAGGTGAGTGTTTACCCTCGGGAGATACAGCCTGAAAATCCCAACAGCTACAGGGTTAGGAAGAGGGAGAACTTCAAGCTACAACGCGAGAAAAAGAAAGCAAGGAAGGAAGGCTATATTCTTCAAAACAAACCACAACTGGTGCTTGCATCTGCTGATAATGGTGCAGAGACCAATCCTCTTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0010033 GO:0031967 GO:0031975 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L27

Protein Analysis

198

Amino Acids

21.72

Weight (kDa)

10.48

Isoelectric Point (pI)

24.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L27	PF01016	61 - 140	8.7e-36	Ribosomal L27 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0009984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40950
fragaria_vesca	FvH4_6g53590 FvH4_6g53590
malus_domestica	MD00G1153700.v1.1 MD09G1010200.v1.1 MD17G1000400.v1.1
prunus_persica	Prupe.3G306900_v2.0.a1 Prupe.3G306900_v2.0.a1
pyrus_communis	pycom17g00840
rosa_chinensis	RchiOBHm_Chr2g0175661
rosa_laevigata	RLG00000022346 RLG00000022352
rosa_multiflora	Rmu_sc0000998.1_g000018
rosa_roxburghii	Rroxscaffold_2G00077170
rosa_rugosa	Rorug02G0586900 Rorug02G0587100
rosa_samantha	Rh2AG665800 Rh2BG676900 Rh2CG640200 Rh2DG690800
rosa_wichuraiana	Rw2G054600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	302
AccI	GTMKAC	1 cut(s)	140
AccII	CGCG	4 cut(s)	11, 182, 219, 495
AciI	CCGC	3 cut(s)	5, 298, 317
AcuI	CTGAAG	1 cut(s)	76
AfaI	GTAC	1 cut(s)	205
AfiI	CCNNNNNNNGG	1 cut(s)	118
AgsI	TTSAA	4 cut(s)	25, 176, 484, 533
AjnI	CCWGG	1 cut(s)	261
AluBI	AGCT	6 cut(s)	60, 66, 130, 197, 456, 487
AluI	AGCT	6 cut(s)	60, 66, 130, 197, 456, 487
Alw21I	GWGCWC	1 cut(s)	62
Alw26I	GTCTC	1 cut(s)	572
Ama87I	CYCGRG	2 cut(s)	239, 426
AoxI	GGCC	2 cut(s)	121, 229
ApaI	GGGCCC	1 cut(s)	125
AspLEI	GCGC	1 cut(s)	184
AspS9I	GGNCC	4 cut(s)	121, 122, 343, 395
AsuC2I	CCSGG	1 cut(s)	276
AsuHPI	GGTGA	3 cut(s)	110, 269, 424
AvaI	CYCGRG	2 cut(s)	239, 426
AvaII	GGWCC	2 cut(s)	343, 395
BaeGI	GKGCMC	2 cut(s)	125, 305
BanI	GGYRCC	1 cut(s)	302
BanII	GRGCYC	3 cut(s)	62, 110, 125
Bbv12I	GWGCWC	1 cut(s)	62
BccI	CCATC	3 cut(s)	43, 290, 362
BciT130I	CCWGG	1 cut(s)	263
BcnI	CCSGG	1 cut(s)	276
BcoDI	GTCTC	1 cut(s)	572
BfaI	CTAG	1 cut(s)	29
BfmI	CTRYAG	1 cut(s)	457
Bme1390I	CCNGG	2 cut(s)	263, 276
Bme18I	GGWCC	2 cut(s)	343, 395
BmeT110I	CYCGRG	2 cut(s)	239, 426
BmgT120I	GGNCC	4 cut(s)	121, 122, 343, 395
BmiI	GGNNCC	4 cut(s)	109, 123, 280, 304
BmrFI	CCNGG	2 cut(s)	263, 276
BmsI	GCATC	1 cut(s)	566
BpuEI	CTTGAG	1 cut(s)	46
BpuMI	CCSGG	1 cut(s)	276
BsaI	GGTCTC	1 cut(s)	572
BsaJI	CCNNGG	1 cut(s)	425
Bsc4I	CCNNNNNNNGG	1 cut(s)	118
Bse1I	ACTGG	1 cut(s)	552
BseBI	CCWGG	1 cut(s)	263
BseDI	CCNNGG	1 cut(s)	425
BseGI	GGATG	1 cut(s)	54
BseLI	CCNNNNNNNGG	1 cut(s)	118
BseMII	CTCAG	1 cut(s)	47
BseNI	ACTGG	1 cut(s)	552
BseRI	GAGGAG	1 cut(s)	73
BseSI	GKGCMC	2 cut(s)	125, 305
BsgI	GTGCAG	1 cut(s)	594
Bsh1236I	CGCG	4 cut(s)	11, 182, 219, 495
Bsh1285I	CGRYCG	2 cut(s)	9, 217
BshFI	GGCC	2 cut(s)	123, 231
BshNI	GGYRCC	1 cut(s)	302
BsiEI	CGRYCG	2 cut(s)	9, 217
BsiHKAI	GWGCWC	1 cut(s)	62
BsiHKCI	CYCGRG	2 cut(s)	239, 426
BsiSI	CCGG	1 cut(s)	276
BslI	CCNNNNNNNGG	1 cut(s)	118
BsmAI	GTCTC	1 cut(s)	572
BsmI	GAATGC	1 cut(s)	38
BsnI	GGCC	2 cut(s)	123, 231
Bso31I	GGTCTC	1 cut(s)	572
BsoBI	CYCGRG	2 cut(s)	239, 426
Bsp120I	GGGCCC	1 cut(s)	121
Bsp1286I	GDGCHC	4 cut(s)	62, 110, 125, 305
Bsp68I	TCGCGA	1 cut(s)	219
BspACI	CCGC	3 cut(s)	5, 298, 317
BspANI	GGCC	2 cut(s)	123, 231
BspCNI	CTCAG	1 cut(s)	48
BspFNI	CGCG	4 cut(s)	11, 182, 219, 495
BspLI	GGNNCC	4 cut(s)	109, 123, 280, 304
BspQI	GCTCTTC	1 cut(s)	73
BspT107I	GGYRCC	1 cut(s)	302
BspTNI	GGTCTC	1 cut(s)	572
BsrI	ACTGG	1 cut(s)	552
BssECI	CCNNGG	1 cut(s)	425
Bst2UI	CCWGG	1 cut(s)	263
Bst4CI	ACNGT	2 cut(s)	215, 257
Bst6I	CTCTTC	3 cut(s)	73, 82, 464
BstC8I	GCNNGC	1 cut(s)	555
BstDEI	CTNAG	1 cut(s)	56
BstEII	GGTNACC	1 cut(s)	257
BstF5I	GGATG	1 cut(s)	54
BstFNI	CGCG	4 cut(s)	11, 182, 219, 495
BstHHI	GCGC	1 cut(s)	184
BstMAI	GTCTC	1 cut(s)	572
BstMCI	CGRYCG	2 cut(s)	9, 217
BstNI	CCWGG	1 cut(s)	263
BstPI	GGTNACC	1 cut(s)	257
BstSCI	CCNGG	2 cut(s)	261, 274
BstSFI	CTRYAG	1 cut(s)	457
BstSLI	GKGCMC	2 cut(s)	125, 305
BstUI	CGCG	4 cut(s)	11, 182, 219, 495
BsuRI	GGCC	2 cut(s)	123, 231
BtsCI	GGATG	1 cut(s)	54
BtuMI	TCGCGA	1 cut(s)	219
Cac8I	GCNNGC	1 cut(s)	555
CfoI	GCGC	1 cut(s)	184
Cfr13I	GGNCC	4 cut(s)	121, 122, 343, 395
CsiI	ACCWGGT	1 cut(s)	261
Csp6I	GTAC	1 cut(s)	204
CviAII	CATG	1 cut(s)	314
CviQI	GTAC	1 cut(s)	204
DdeI	CTNAG	1 cut(s)	56
Eam1104I	CTCTTC	3 cut(s)	73, 82, 464
EarI	CTCTTC	3 cut(s)	73, 82, 464
Ecl136II	GAGCTC	1 cut(s)	60
Eco24I	GRGCYC	3 cut(s)	62, 110, 125
Eco31I	GGTCTC	1 cut(s)	572
Eco47I	GGWCC	2 cut(s)	343, 395
Eco53kI	GAGCTC	1 cut(s)	60
Eco57I	CTGAAG	1 cut(s)	76
Eco88I	CYCGRG	2 cut(s)	239, 426
Eco91I	GGTNACC	1 cut(s)	257
EcoICRI	GAGCTC	1 cut(s)	60
EcoO65I	GGTNACC	1 cut(s)	257
EcoRII	CCWGG	1 cut(s)	261
EcoT38I	GRGCYC	3 cut(s)	62, 110, 125
FaeI	CATG	1 cut(s)	317
FaiI	YATR	6 cut(s)	17, 290, 315, 348, 393, 525
FalI	AAGNNNNNCTT	4 cut(s)	55, 87, 119, 151
FatI	CATG	1 cut(s)	313
FauI	CCCGC	2 cut(s)	291, 310
FblI	GTMKAC	1 cut(s)	140
FokI	GGATG	1 cut(s)	61
FriOI	GRGCYC	3 cut(s)	62, 110, 125
FspBI	CTAG	1 cut(s)	29
GlaI	GCGC	1 cut(s)	183
HaeIII	GGCC	2 cut(s)	123, 231
HapII	CCGG	1 cut(s)	276
HhaI	GCGC	1 cut(s)	184
Hin1II	CATG	1 cut(s)	317
Hin6I	GCGC	1 cut(s)	182
HinP1I	GCGC	1 cut(s)	182
HinfI	GANTC	2 cut(s)	172, 221
HpaII	CCGG	1 cut(s)	276
HphI	GGTGA	3 cut(s)	110, 269, 424
Hpy166II	GTNNAC	2 cut(s)	141, 421
Hpy188I	TCNGA	5 cut(s)	35, 44, 57, 95, 363
Hpy188III	TCNNGA	2 cut(s)	218, 428
Hpy8I	GTNNAC	2 cut(s)	141, 421
HpyAV	CCTTC	3 cut(s)	403, 508, 512
HpyCH4III	ACNGT	2 cut(s)	215, 257
HpyCH4IV	ACGT	1 cut(s)	292
HpyCH4V	TGCA	2 cut(s)	557, 575
HpyF3I	CTNAG	1 cut(s)	56
HpySE526I	ACGT	1 cut(s)	292
Hsp92II	CATG	1 cut(s)	317
HspAI	GCGC	1 cut(s)	182
LguI	GCTCTTC	1 cut(s)	73
LmnI	GCTCC	4 cut(s)	35, 113, 194, 284
LpnPI	CCDG	9 cut(s)	183, 248, 275, 289, 388, 411, 445, 453, 533
LweI	GCATC	1 cut(s)	566
MabI	ACCWGGT	1 cut(s)	261
MaeI	CTAG	1 cut(s)	29
MaeII	ACGT	1 cut(s)	292
MaeIII	GTNAC	1 cut(s)	257
MboII	GAAGA	8 cut(s)	60, 63, 69, 82, 334, 418, 481, 521
MfeI	CAATTG	1 cut(s)	116
MhlI	GDGCHC	4 cut(s)	62, 110, 125, 305
MluCI	AATT	1 cut(s)	116
MmeI	TCCRAC	1 cut(s)	13
MnlI	CCTC	8 cut(s)	38, 85, 89, 91, 94, 435, 465, 597
MseI	TTAA	2 cut(s)	246, 378
MspA1I	CMGCKG	1 cut(s)	298
MspI	CCGG	1 cut(s)	276
MspR9I	CCNGG	2 cut(s)	263, 276
MunI	CAATTG	1 cut(s)	116
Mva1269I	GAATGC	1 cut(s)	38
MvaI	CCWGG	1 cut(s)	263
MvnI	CGCG	4 cut(s)	11, 182, 219, 495
NciI	CCSGG	1 cut(s)	276
NlaIII	CATG	1 cut(s)	317
NlaIV	GGNNCC	4 cut(s)	109, 123, 280, 304
NmuCI	GTSAC	1 cut(s)	257
NruI	TCGCGA	1 cut(s)	219
PciSI	GCTCTTC	1 cut(s)	73
PctI	GAATGC	1 cut(s)	38
PfeI	GAWTC	2 cut(s)	172, 221
PflFI	GACNNNGTC	1 cut(s)	263
Psp124BI	GAGCTC	1 cut(s)	62
Psp6I	CCWGG	1 cut(s)	261
PspEI	GGTNACC	1 cut(s)	257
PspGI	CCWGG	1 cut(s)	261
PspN4I	GGNNCC	4 cut(s)	109, 123, 280, 304
PspOMI	GGGCCC	1 cut(s)	121
PspPI	GGNCC	4 cut(s)	121, 122, 343, 395
PsyI	GACNNNGTC	1 cut(s)	263
RruI	TCGCGA	1 cut(s)	219
RsaI	GTAC	1 cut(s)	205
RsaNI	GTAC	1 cut(s)	204
SacI	GAGCTC	1 cut(s)	62
SapI	GCTCTTC	1 cut(s)	73
SaqAI	TTAA	2 cut(s)	246, 378
Sau96I	GGNCC	4 cut(s)	121, 122, 343, 395
ScrFI	CCNGG	2 cut(s)	263, 276
SduI	GDGCHC	4 cut(s)	62, 110, 125, 305
SexAI	ACCWGGT	1 cut(s)	261
SfaNI	GCATC	1 cut(s)	566
SfcI	CTRYAG	1 cut(s)	457
SinI	GGWCC	2 cut(s)	343, 395
SmlI	CTYRAG	1 cut(s)	61
SmoI	CTYRAG	1 cut(s)	61
Sse9I	AATT	1 cut(s)	116
SsiI	CCGC	3 cut(s)	5, 298, 317
SspMI	CTAG	1 cut(s)	29
SstI	GAGCTC	1 cut(s)	62
StyD4I	CCNGG	2 cut(s)	261, 274
TaaI	ACNGT	2 cut(s)	215, 257
TaiI	ACGT	1 cut(s)	295
TasI	AATT	1 cut(s)	116
TfiI	GAWTC	2 cut(s)	172, 221
Tru1I	TTAA	2 cut(s)	246, 378
Tru9I	TTAA	2 cut(s)	246, 378
TseFI	GTSAC	1 cut(s)	257
Tsp45I	GTSAC	1 cut(s)	257
Tth111I	GACNNNGTC	1 cut(s)	263
VpaK11BI	GGWCC	2 cut(s)	343, 395
XmiI	GTMKAC	1 cut(s)	140
XspI	CTAG	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.