Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0009984

Physical Location & Seq

Genomic Coordinates Forward (+)

88762326 .. 88763449

Gene Structure 1124 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG676900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGCGGTCGCGTCTATGAGTTTCAACCTAGTCGGAGCATTCAGAGGGATGGCTCTGAGCTCAAGCTCTTCTTCCTCTTCCTCCTCTTTCTTCAGAGGTGATTTGGGCTCCCTACAATTGGGCCCAAAGCTGTCCTTGTCTACTACTACCCAACGCAGATTGCCATTGACGATTCAAAACGCGCACAAGAAAGGAGCTGGTAGTACCAAGAACGGTCGCGATTCCAAAGGCCAAAGGCTCGGGGTTAAGATTTACGGTGACCAGGTCGCCAAGCCCGGCTCCATCATCATACGTCAGCGGGGCACCAAGTTCCATGCGGGGAAGAATGTGGGGCTTGGCAAGGACCATACCATTTTCTCTCTGATTGATGGGTTGGTTAAGTTTGAGAAGTATGGACCTGACAGGAAGAAGGTGAGTGTTTACCCTCGGGAGATACAGCCTGAAAATCCCAACAGCTACAGGGTTAGGAAGAGGGAGAACTTCAAGCTACAACGCGAGAAAAAGAAAGCAAGGAAGGAAGGCTATATTCTTCAAAACAAACCACAACTGGTGCTTGCATCTGCTGATAATGGTGCAGAGACCAATCCTCTTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0010033 GO:0031967 GO:0031975 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L27

Protein Analysis

198

Amino Acids

21.72

Weight (kDa)

10.48

Isoelectric Point (pI)

24.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L27	PF01016	61 - 140	8.7e-36	Ribosomal L27 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40950
fragaria_vesca	FvH4_6g53590 FvH4_6g53590
malus_domestica	MD00G1153700.v1.1 MD09G1010200.v1.1 MD17G1000400.v1.1
prunus_persica	Prupe.3G306900_v2.0.a1 Prupe.3G306900_v2.0.a1
pyrus_communis	pycom17g00840
rosa_chinensis	RchiOBHm_Chr2g0175661
rosa_laevigata	RLG00000022346 RLG00000022352
rosa_multiflora	Rmu_sc0000998.1_g000018
rosa_roxburghii	Rroxscaffold_2G00077170
rosa_rugosa	Rorug02G0586900 Rorug02G0587100
rosa_samantha	Rh2AG665800 Rh2BG676900 Rh2CG640200 Rh2DG690800
rosa_wichuraiana	Rw2G054600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	302
AccI	GTMKAC	1 cut(s)	140
AccII	CGCG	4 cut(s)	11, 182, 219, 495
AciI	CCGC	3 cut(s)	5, 298, 317
AcuI	CTGAAG	1 cut(s)	76
AfaI	GTAC	1 cut(s)	205
AfiI	CCNNNNNNNGG	1 cut(s)	118
AgsI	TTSAA	4 cut(s)	25, 176, 484, 533
AjnI	CCWGG	1 cut(s)	261
AluBI	AGCT	6 cut(s)	60, 66, 130, 197, 456, 487
AluI	AGCT	6 cut(s)	60, 66, 130, 197, 456, 487
Alw21I	GWGCWC	1 cut(s)	62
Alw26I	GTCTC	1 cut(s)	572
Ama87I	CYCGRG	2 cut(s)	239, 426
AoxI	GGCC	2 cut(s)	121, 229
ApaI	GGGCCC	1 cut(s)	125
AspLEI	GCGC	1 cut(s)	184
AspS9I	GGNCC	4 cut(s)	121, 122, 343, 395
AsuC2I	CCSGG	1 cut(s)	276
AsuHPI	GGTGA	3 cut(s)	110, 269, 424
AvaI	CYCGRG	2 cut(s)	239, 426
AvaII	GGWCC	2 cut(s)	343, 395
BaeGI	GKGCMC	2 cut(s)	125, 305
BanI	GGYRCC	1 cut(s)	302
BanII	GRGCYC	3 cut(s)	62, 110, 125
Bbv12I	GWGCWC	1 cut(s)	62
BccI	CCATC	3 cut(s)	43, 290, 362
BciT130I	CCWGG	1 cut(s)	263
BcnI	CCSGG	1 cut(s)	276
BcoDI	GTCTC	1 cut(s)	572
BfaI	CTAG	1 cut(s)	29
BfmI	CTRYAG	1 cut(s)	457
Bme1390I	CCNGG	2 cut(s)	263, 276
Bme18I	GGWCC	2 cut(s)	343, 395
BmeT110I	CYCGRG	2 cut(s)	239, 426
BmgT120I	GGNCC	4 cut(s)	121, 122, 343, 395
BmiI	GGNNCC	4 cut(s)	109, 123, 280, 304
BmrFI	CCNGG	2 cut(s)	263, 276
BmsI	GCATC	1 cut(s)	566
BpuEI	CTTGAG	1 cut(s)	46
BpuMI	CCSGG	1 cut(s)	276
BsaI	GGTCTC	1 cut(s)	572
BsaJI	CCNNGG	1 cut(s)	425
Bsc4I	CCNNNNNNNGG	1 cut(s)	118
Bse1I	ACTGG	1 cut(s)	552
BseBI	CCWGG	1 cut(s)	263
BseDI	CCNNGG	1 cut(s)	425
BseGI	GGATG	1 cut(s)	54
BseLI	CCNNNNNNNGG	1 cut(s)	118
BseMII	CTCAG	1 cut(s)	47
BseNI	ACTGG	1 cut(s)	552
BseRI	GAGGAG	1 cut(s)	73
BseSI	GKGCMC	2 cut(s)	125, 305
BsgI	GTGCAG	1 cut(s)	594
Bsh1236I	CGCG	4 cut(s)	11, 182, 219, 495
Bsh1285I	CGRYCG	2 cut(s)	9, 217
BshFI	GGCC	2 cut(s)	123, 231
BshNI	GGYRCC	1 cut(s)	302
BsiEI	CGRYCG	2 cut(s)	9, 217
BsiHKAI	GWGCWC	1 cut(s)	62
BsiHKCI	CYCGRG	2 cut(s)	239, 426
BsiSI	CCGG	1 cut(s)	276
BslI	CCNNNNNNNGG	1 cut(s)	118
BsmAI	GTCTC	1 cut(s)	572
BsmI	GAATGC	1 cut(s)	38
BsnI	GGCC	2 cut(s)	123, 231
Bso31I	GGTCTC	1 cut(s)	572
BsoBI	CYCGRG	2 cut(s)	239, 426
Bsp120I	GGGCCC	1 cut(s)	121
Bsp1286I	GDGCHC	4 cut(s)	62, 110, 125, 305
Bsp68I	TCGCGA	1 cut(s)	219
BspACI	CCGC	3 cut(s)	5, 298, 317
BspANI	GGCC	2 cut(s)	123, 231
BspCNI	CTCAG	1 cut(s)	48
BspFNI	CGCG	4 cut(s)	11, 182, 219, 495
BspLI	GGNNCC	4 cut(s)	109, 123, 280, 304
BspQI	GCTCTTC	1 cut(s)	73
BspT107I	GGYRCC	1 cut(s)	302
BspTNI	GGTCTC	1 cut(s)	572
BsrI	ACTGG	1 cut(s)	552
BssECI	CCNNGG	1 cut(s)	425
Bst2UI	CCWGG	1 cut(s)	263
Bst4CI	ACNGT	2 cut(s)	215, 257
Bst6I	CTCTTC	3 cut(s)	73, 82, 464
BstC8I	GCNNGC	1 cut(s)	555
BstDEI	CTNAG	1 cut(s)	56
BstEII	GGTNACC	1 cut(s)	257
BstF5I	GGATG	1 cut(s)	54
BstFNI	CGCG	4 cut(s)	11, 182, 219, 495
BstHHI	GCGC	1 cut(s)	184
BstMAI	GTCTC	1 cut(s)	572
BstMCI	CGRYCG	2 cut(s)	9, 217
BstNI	CCWGG	1 cut(s)	263
BstPI	GGTNACC	1 cut(s)	257
BstSCI	CCNGG	2 cut(s)	261, 274
BstSFI	CTRYAG	1 cut(s)	457
BstSLI	GKGCMC	2 cut(s)	125, 305
BstUI	CGCG	4 cut(s)	11, 182, 219, 495
BsuRI	GGCC	2 cut(s)	123, 231
BtsCI	GGATG	1 cut(s)	54
BtuMI	TCGCGA	1 cut(s)	219
Cac8I	GCNNGC	1 cut(s)	555
CfoI	GCGC	1 cut(s)	184
Cfr13I	GGNCC	4 cut(s)	121, 122, 343, 395
CsiI	ACCWGGT	1 cut(s)	261
Csp6I	GTAC	1 cut(s)	204
CviAII	CATG	1 cut(s)	314
CviQI	GTAC	1 cut(s)	204
DdeI	CTNAG	1 cut(s)	56
Eam1104I	CTCTTC	3 cut(s)	73, 82, 464
EarI	CTCTTC	3 cut(s)	73, 82, 464
Ecl136II	GAGCTC	1 cut(s)	60
Eco24I	GRGCYC	3 cut(s)	62, 110, 125
Eco31I	GGTCTC	1 cut(s)	572
Eco47I	GGWCC	2 cut(s)	343, 395
Eco53kI	GAGCTC	1 cut(s)	60
Eco57I	CTGAAG	1 cut(s)	76
Eco88I	CYCGRG	2 cut(s)	239, 426
Eco91I	GGTNACC	1 cut(s)	257
EcoICRI	GAGCTC	1 cut(s)	60
EcoO65I	GGTNACC	1 cut(s)	257
EcoRII	CCWGG	1 cut(s)	261
EcoT38I	GRGCYC	3 cut(s)	62, 110, 125
FaeI	CATG	1 cut(s)	317
FaiI	YATR	6 cut(s)	17, 290, 315, 348, 393, 525
FalI	AAGNNNNNCTT	4 cut(s)	55, 87, 119, 151
FatI	CATG	1 cut(s)	313
FauI	CCCGC	2 cut(s)	291, 310
FblI	GTMKAC	1 cut(s)	140
FokI	GGATG	1 cut(s)	61
FriOI	GRGCYC	3 cut(s)	62, 110, 125
FspBI	CTAG	1 cut(s)	29
GlaI	GCGC	1 cut(s)	183
HaeIII	GGCC	2 cut(s)	123, 231
HapII	CCGG	1 cut(s)	276
HhaI	GCGC	1 cut(s)	184
Hin1II	CATG	1 cut(s)	317
Hin6I	GCGC	1 cut(s)	182
HinP1I	GCGC	1 cut(s)	182
HinfI	GANTC	2 cut(s)	172, 221
HpaII	CCGG	1 cut(s)	276
HphI	GGTGA	3 cut(s)	110, 269, 424
Hpy166II	GTNNAC	2 cut(s)	141, 421
Hpy188I	TCNGA	5 cut(s)	35, 44, 57, 95, 363
Hpy188III	TCNNGA	2 cut(s)	218, 428
Hpy8I	GTNNAC	2 cut(s)	141, 421
HpyAV	CCTTC	3 cut(s)	403, 508, 512
HpyCH4III	ACNGT	2 cut(s)	215, 257
HpyCH4IV	ACGT	1 cut(s)	292
HpyCH4V	TGCA	2 cut(s)	557, 575
HpyF3I	CTNAG	1 cut(s)	56
HpySE526I	ACGT	1 cut(s)	292
Hsp92II	CATG	1 cut(s)	317
HspAI	GCGC	1 cut(s)	182
LguI	GCTCTTC	1 cut(s)	73
LmnI	GCTCC	4 cut(s)	35, 113, 194, 284
LpnPI	CCDG	9 cut(s)	183, 248, 275, 289, 388, 411, 445, 453, 533
LweI	GCATC	1 cut(s)	566
MabI	ACCWGGT	1 cut(s)	261
MaeI	CTAG	1 cut(s)	29
MaeII	ACGT	1 cut(s)	292
MaeIII	GTNAC	1 cut(s)	257
MboII	GAAGA	8 cut(s)	60, 63, 69, 82, 334, 418, 481, 521
MfeI	CAATTG	1 cut(s)	116
MhlI	GDGCHC	4 cut(s)	62, 110, 125, 305
MluCI	AATT	1 cut(s)	116
MmeI	TCCRAC	1 cut(s)	13
MnlI	CCTC	8 cut(s)	38, 85, 89, 91, 94, 435, 465, 597
MseI	TTAA	2 cut(s)	246, 378
MspA1I	CMGCKG	1 cut(s)	298
MspI	CCGG	1 cut(s)	276
MspR9I	CCNGG	2 cut(s)	263, 276
MunI	CAATTG	1 cut(s)	116
Mva1269I	GAATGC	1 cut(s)	38
MvaI	CCWGG	1 cut(s)	263
MvnI	CGCG	4 cut(s)	11, 182, 219, 495
NciI	CCSGG	1 cut(s)	276
NlaIII	CATG	1 cut(s)	317
NlaIV	GGNNCC	4 cut(s)	109, 123, 280, 304
NmuCI	GTSAC	1 cut(s)	257
NruI	TCGCGA	1 cut(s)	219
PciSI	GCTCTTC	1 cut(s)	73
PctI	GAATGC	1 cut(s)	38
PfeI	GAWTC	2 cut(s)	172, 221
PflFI	GACNNNGTC	1 cut(s)	263
Psp124BI	GAGCTC	1 cut(s)	62
Psp6I	CCWGG	1 cut(s)	261
PspEI	GGTNACC	1 cut(s)	257
PspGI	CCWGG	1 cut(s)	261
PspN4I	GGNNCC	4 cut(s)	109, 123, 280, 304
PspOMI	GGGCCC	1 cut(s)	121
PspPI	GGNCC	4 cut(s)	121, 122, 343, 395
PsyI	GACNNNGTC	1 cut(s)	263
RruI	TCGCGA	1 cut(s)	219
RsaI	GTAC	1 cut(s)	205
RsaNI	GTAC	1 cut(s)	204
SacI	GAGCTC	1 cut(s)	62
SapI	GCTCTTC	1 cut(s)	73
SaqAI	TTAA	2 cut(s)	246, 378
Sau96I	GGNCC	4 cut(s)	121, 122, 343, 395
ScrFI	CCNGG	2 cut(s)	263, 276
SduI	GDGCHC	4 cut(s)	62, 110, 125, 305
SexAI	ACCWGGT	1 cut(s)	261
SfaNI	GCATC	1 cut(s)	566
SfcI	CTRYAG	1 cut(s)	457
SinI	GGWCC	2 cut(s)	343, 395
SmlI	CTYRAG	1 cut(s)	61
SmoI	CTYRAG	1 cut(s)	61
Sse9I	AATT	1 cut(s)	116
SsiI	CCGC	3 cut(s)	5, 298, 317
SspMI	CTAG	1 cut(s)	29
SstI	GAGCTC	1 cut(s)	62
StyD4I	CCNGG	2 cut(s)	261, 274
TaaI	ACNGT	2 cut(s)	215, 257
TaiI	ACGT	1 cut(s)	295
TasI	AATT	1 cut(s)	116
TfiI	GAWTC	2 cut(s)	172, 221
Tru1I	TTAA	2 cut(s)	246, 378
Tru9I	TTAA	2 cut(s)	246, 378
TseFI	GTSAC	1 cut(s)	257
Tsp45I	GTSAC	1 cut(s)	257
Tth111I	GACNNNGTC	1 cut(s)	263
VpaK11BI	GGWCC	2 cut(s)	343, 395
XmiI	GTMKAC	1 cut(s)	140
XspI	CTAG	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.