Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0009984

Physical Location & Seq

Genomic Coordinates Reverse (-)

804548 .. 806117

Gene Structure 1570 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00077170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGCGGTCGCGTCTATGAGTTTCAACCTAGTCGGAGCATTCAGAGGGATGGCTCTGAGCTCAAGCTCTTCCTCTTCCTCCTCCTCCTCCTTCTTCAGAGGTGATTTGGGCTCCCTACAATTGGGCCCAAAGCTATCCTTGTCTACTACTACCCAACGCAGATTGCCATTGACGATACAAAACGCGCACAAGAAAGGAGCTGGTAGTACTAAGAACGGTCGCGATTCCAAAGGCCAAAGGCTCGGCGTCAAGATTTACGGTGACCAGGTCGCCAAGCCCGGCTCCATCATCATACGTCAGCGGGGCACCAAGTTCCATGCGGGGAAGAATGTGGGGCTTGGCAAGGACCATACCATTTTCTCTCTGATTGATGGGTTGGTTAAGTTTGAGAAGTATGGACCTGACAGGAAGAAGGTGAGTGTTTACCCTCGGGAGATACAGCCTGAAAATCCCAACAGCTACAGGGTTAGGAAGAGGGGAGAACTTCAAGCTACAACGCGAGAAAAAGAAAGCAAGAAAGGAAGGCTATATTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0010033 GO:0031967 GO:0031975 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L27

Protein Analysis

178

Amino Acids

19.45

Weight (kDa)

10.71

Isoelectric Point (pI)

27.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L27	PF01016	62 - 141	6.8e-36	Ribosomal L27 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0009984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40950
fragaria_vesca	FvH4_6g53590 FvH4_6g53590
malus_domestica	MD00G1153700.v1.1 MD09G1010200.v1.1 MD17G1000400.v1.1
prunus_persica	Prupe.3G306900_v2.0.a1 Prupe.3G306900_v2.0.a1
pyrus_communis	pycom17g00840
rosa_chinensis	RchiOBHm_Chr2g0175661
rosa_laevigata	RLG00000022346 RLG00000022352
rosa_multiflora	Rmu_sc0000998.1_g000018
rosa_roxburghii	Rroxscaffold_2G00077170
rosa_rugosa	Rorug02G0586900 Rorug02G0587100
rosa_samantha	Rh2AG665800 Rh2BG676900 Rh2CG640200 Rh2DG690800
rosa_wichuraiana	Rw2G054600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	305
AccI	GTMKAC	1 cut(s)	143
AccII	CGCG	4 cut(s)	11, 185, 222, 499
AciI	CCGC	3 cut(s)	5, 301, 320
AcuI	CTGAAG	1 cut(s)	79
AcyI	GRCGYC	1 cut(s)	246
AfaI	GTAC	1 cut(s)	208
AfiI	CCNNNNNNNGG	1 cut(s)	121
AgsI	TTSAA	2 cut(s)	25, 488
AjnI	CCWGG	1 cut(s)	264
AluBI	AGCT	6 cut(s)	60, 66, 133, 200, 459, 491
AluI	AGCT	6 cut(s)	60, 66, 133, 200, 459, 491
Alw21I	GWGCWC	1 cut(s)	62
Ama87I	CYCGRG	1 cut(s)	429
AoxI	GGCC	2 cut(s)	124, 232
ApaI	GGGCCC	1 cut(s)	128
AspLEI	GCGC	1 cut(s)	187
AspS9I	GGNCC	4 cut(s)	124, 125, 346, 398
AsuC2I	CCSGG	1 cut(s)	279
AsuHPI	GGTGA	3 cut(s)	113, 272, 427
AvaI	CYCGRG	1 cut(s)	429
AvaII	GGWCC	2 cut(s)	346, 398
BaeGI	GKGCMC	2 cut(s)	128, 308
BanI	GGYRCC	1 cut(s)	305
BanII	GRGCYC	3 cut(s)	62, 113, 128
Bbv12I	GWGCWC	1 cut(s)	62
BccI	CCATC	3 cut(s)	43, 293, 365
BciT130I	CCWGG	1 cut(s)	266
BcnI	CCSGG	1 cut(s)	279
BfaI	CTAG	1 cut(s)	29
BfmI	CTRYAG	1 cut(s)	460
BmcAI	AGTACT	1 cut(s)	208
Bme1390I	CCNGG	2 cut(s)	266, 279
Bme18I	GGWCC	2 cut(s)	346, 398
BmeT110I	CYCGRG	1 cut(s)	429
BmgT120I	GGNCC	4 cut(s)	124, 125, 346, 398
BmiI	GGNNCC	4 cut(s)	112, 126, 283, 307
BmrFI	CCNGG	2 cut(s)	266, 279
BpuEI	CTTGAG	1 cut(s)	46
BpuMI	CCSGG	1 cut(s)	279
BsaHI	GRCGYC	1 cut(s)	246
BsaJI	CCNNGG	1 cut(s)	428
Bsc4I	CCNNNNNNNGG	1 cut(s)	121
BseBI	CCWGG	1 cut(s)	266
BseDI	CCNNGG	1 cut(s)	428
BseGI	GGATG	1 cut(s)	54
BseLI	CCNNNNNNNGG	1 cut(s)	121
BseMII	CTCAG	1 cut(s)	47
BseRI	GAGGAG	3 cut(s)	70, 73, 76
BseSI	GKGCMC	2 cut(s)	128, 308
Bsh1236I	CGCG	4 cut(s)	11, 185, 222, 499
Bsh1285I	CGRYCG	2 cut(s)	9, 220
BshFI	GGCC	2 cut(s)	126, 234
BshNI	GGYRCC	1 cut(s)	305
BsiEI	CGRYCG	2 cut(s)	9, 220
BsiHKAI	GWGCWC	1 cut(s)	62
BsiHKCI	CYCGRG	1 cut(s)	429
BsiSI	CCGG	1 cut(s)	279
BslI	CCNNNNNNNGG	1 cut(s)	121
BsmI	GAATGC	1 cut(s)	38
BsnI	GGCC	2 cut(s)	126, 234
BsoBI	CYCGRG	1 cut(s)	429
Bsp120I	GGGCCC	1 cut(s)	124
Bsp1286I	GDGCHC	4 cut(s)	62, 113, 128, 308
Bsp68I	TCGCGA	1 cut(s)	222
BspACI	CCGC	3 cut(s)	5, 301, 320
BspANI	GGCC	2 cut(s)	126, 234
BspCNI	CTCAG	1 cut(s)	48
BspFNI	CGCG	4 cut(s)	11, 185, 222, 499
BspLI	GGNNCC	4 cut(s)	112, 126, 283, 307
BspQI	GCTCTTC	1 cut(s)	73
BspT107I	GGYRCC	1 cut(s)	305
BssECI	CCNNGG	1 cut(s)	428
BssNI	GRCGYC	1 cut(s)	246
Bst2UI	CCWGG	1 cut(s)	266
Bst4CI	ACNGT	2 cut(s)	218, 260
Bst6I	CTCTTC	3 cut(s)	73, 79, 467
BstACI	GRCGYC	1 cut(s)	246
BstDEI	CTNAG	2 cut(s)	56, 210
BstEII	GGTNACC	1 cut(s)	260
BstF5I	GGATG	1 cut(s)	54
BstFNI	CGCG	4 cut(s)	11, 185, 222, 499
BstHHI	GCGC	1 cut(s)	187
BstMCI	CGRYCG	2 cut(s)	9, 220
BstNI	CCWGG	1 cut(s)	266
BstPI	GGTNACC	1 cut(s)	260
BstSCI	CCNGG	2 cut(s)	264, 277
BstSFI	CTRYAG	1 cut(s)	460
BstSLI	GKGCMC	2 cut(s)	128, 308
BstUI	CGCG	4 cut(s)	11, 185, 222, 499
BsuRI	GGCC	2 cut(s)	126, 234
BtsCI	GGATG	1 cut(s)	54
BtuMI	TCGCGA	1 cut(s)	222
CfoI	GCGC	1 cut(s)	187
Cfr13I	GGNCC	4 cut(s)	124, 125, 346, 398
CseI	GACGC	1 cut(s)	235
CsiI	ACCWGGT	1 cut(s)	264
Csp6I	GTAC	1 cut(s)	207
CviAII	CATG	1 cut(s)	317
CviQI	GTAC	1 cut(s)	207
DdeI	CTNAG	2 cut(s)	56, 210
Eam1104I	CTCTTC	3 cut(s)	73, 79, 467
EarI	CTCTTC	3 cut(s)	73, 79, 467
Ecl136II	GAGCTC	1 cut(s)	60
Eco24I	GRGCYC	3 cut(s)	62, 113, 128
Eco47I	GGWCC	2 cut(s)	346, 398
Eco53kI	GAGCTC	1 cut(s)	60
Eco57I	CTGAAG	1 cut(s)	79
Eco88I	CYCGRG	1 cut(s)	429
Eco91I	GGTNACC	1 cut(s)	260
EcoICRI	GAGCTC	1 cut(s)	60
EcoO65I	GGTNACC	1 cut(s)	260
EcoRII	CCWGG	1 cut(s)	264
EcoT38I	GRGCYC	3 cut(s)	62, 113, 128
FaeI	CATG	1 cut(s)	320
FaiI	YATR	6 cut(s)	17, 293, 318, 351, 396, 529
FalI	AAGNNNNNCTT	2 cut(s)	122, 154
FatI	CATG	1 cut(s)	316
FauI	CCCGC	2 cut(s)	294, 313
FblI	GTMKAC	1 cut(s)	143
FokI	GGATG	1 cut(s)	61
FriOI	GRGCYC	3 cut(s)	62, 113, 128
FspBI	CTAG	1 cut(s)	29
GlaI	GCGC	1 cut(s)	186
HaeIII	GGCC	2 cut(s)	126, 234
HapII	CCGG	1 cut(s)	279
HgaI	GACGC	1 cut(s)	235
HhaI	GCGC	1 cut(s)	187
Hin1I	GRCGYC	1 cut(s)	246
Hin1II	CATG	1 cut(s)	320
Hin6I	GCGC	1 cut(s)	185
HinP1I	GCGC	1 cut(s)	185
HinfI	GANTC	1 cut(s)	224
HpaII	CCGG	1 cut(s)	279
HphI	GGTGA	3 cut(s)	113, 272, 427
Hpy166II	GTNNAC	2 cut(s)	144, 424
Hpy188I	TCNGA	5 cut(s)	35, 44, 57, 98, 366
Hpy188III	TCNNGA	3 cut(s)	221, 250, 431
Hpy8I	GTNNAC	2 cut(s)	144, 424
HpyAV	CCTTC	3 cut(s)	100, 406, 516
HpyCH4III	ACNGT	2 cut(s)	218, 260
HpyCH4IV	ACGT	1 cut(s)	295
HpyF3I	CTNAG	2 cut(s)	56, 210
HpySE526I	ACGT	1 cut(s)	295
Hsp92I	GRCGYC	1 cut(s)	246
Hsp92II	CATG	1 cut(s)	320
HspAI	GCGC	1 cut(s)	185
LguI	GCTCTTC	1 cut(s)	73
LmnI	GCTCC	4 cut(s)	35, 116, 197, 287
LpnPI	CCDG	8 cut(s)	186, 251, 278, 292, 391, 414, 448, 456
MabI	ACCWGGT	1 cut(s)	264
MaeI	CTAG	1 cut(s)	29
MaeII	ACGT	1 cut(s)	295
MaeIII	GTNAC	1 cut(s)	260
MboII	GAAGA	6 cut(s)	60, 66, 85, 337, 421, 484
MfeI	CAATTG	1 cut(s)	119
MhlI	GDGCHC	4 cut(s)	62, 113, 128, 308
MluCI	AATT	1 cut(s)	119
MmeI	TCCRAC	1 cut(s)	13
MnlI	CCTC	9 cut(s)	38, 82, 88, 91, 92, 94, 97, 438, 468
MseI	TTAA	2 cut(s)	381, 535
MspA1I	CMGCKG	1 cut(s)	301
MspI	CCGG	1 cut(s)	279
MspR9I	CCNGG	2 cut(s)	266, 279
MunI	CAATTG	1 cut(s)	119
Mva1269I	GAATGC	1 cut(s)	38
MvaI	CCWGG	1 cut(s)	266
MvnI	CGCG	4 cut(s)	11, 185, 222, 499
NciI	CCSGG	1 cut(s)	279
NlaIII	CATG	1 cut(s)	320
NlaIV	GGNNCC	4 cut(s)	112, 126, 283, 307
NmeAIII	GCCGAG	1 cut(s)	222
NmuCI	GTSAC	1 cut(s)	260
NruI	TCGCGA	1 cut(s)	222
PciSI	GCTCTTC	1 cut(s)	73
PctI	GAATGC	1 cut(s)	38
PfeI	GAWTC	1 cut(s)	224
PflFI	GACNNNGTC	1 cut(s)	266
Psp124BI	GAGCTC	1 cut(s)	62
Psp6I	CCWGG	1 cut(s)	264
PspEI	GGTNACC	1 cut(s)	260
PspGI	CCWGG	1 cut(s)	264
PspN4I	GGNNCC	4 cut(s)	112, 126, 283, 307
PspOMI	GGGCCC	1 cut(s)	124
PspPI	GGNCC	4 cut(s)	124, 125, 346, 398
PsyI	GACNNNGTC	1 cut(s)	266
RruI	TCGCGA	1 cut(s)	222
RsaI	GTAC	1 cut(s)	208
RsaNI	GTAC	1 cut(s)	207
SacI	GAGCTC	1 cut(s)	62
SapI	GCTCTTC	1 cut(s)	73
SaqAI	TTAA	2 cut(s)	381, 535
Sau96I	GGNCC	4 cut(s)	124, 125, 346, 398
ScaI	AGTACT	1 cut(s)	208
ScrFI	CCNGG	2 cut(s)	266, 279
SduI	GDGCHC	4 cut(s)	62, 113, 128, 308
SexAI	ACCWGGT	1 cut(s)	264
SfcI	CTRYAG	1 cut(s)	460
SinI	GGWCC	2 cut(s)	346, 398
SmlI	CTYRAG	1 cut(s)	61
SmoI	CTYRAG	1 cut(s)	61
Sse9I	AATT	1 cut(s)	119
SsiI	CCGC	3 cut(s)	5, 301, 320
SspMI	CTAG	1 cut(s)	29
SstI	GAGCTC	1 cut(s)	62
StyD4I	CCNGG	2 cut(s)	264, 277
TaaI	ACNGT	2 cut(s)	218, 260
TaiI	ACGT	1 cut(s)	298
TasI	AATT	1 cut(s)	119
TatI	WGTACW	1 cut(s)	206
TfiI	GAWTC	1 cut(s)	224
Tru1I	TTAA	2 cut(s)	381, 535
Tru9I	TTAA	2 cut(s)	381, 535
TseFI	GTSAC	1 cut(s)	260
Tsp45I	GTSAC	1 cut(s)	260
Tth111I	GACNNNGTC	1 cut(s)	266
VpaK11BI	GGWCC	2 cut(s)	346, 398
XmiI	GTMKAC	1 cut(s)	143
XspI	CTAG	1 cut(s)	29
ZrmI	AGTACT	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.