Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0009984

Physical Location & Seq

Genomic Coordinates Forward (+)

82777729 .. 82778879

Gene Structure 1151 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022352

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGCGGTCGCGTCTATGAGTTTGAACCTAGTCGGAGCATTCAGAGGGATGGCTCTGAGCTCAAGCTCCTCAAGCTCTTCTTCTTCCCCGCCCTCCTCTTTCTTCAGAGGTGATTTGGGCTCCGTCCAATTGGGCCCAAAGCTATCCTTGCCTACTACTACCCAACGCAGATTGCCATTGACGATTCAAAACGCGCACAAGAAAGGAGCTGGCCAAAGGCTCGGCGTCAAGATTTACGGTGACCAGGTCGCCAACGCCGGCTCCATCATCATACGTCAGCGTGGCACCAAGTTCCATGGGGGGAATAATGTGGGGCTTGGCAAGGACCATACCATTTTCTCTTTGATAGATGGCTTGGTTAAGTTTGAGAAGTATGGACCTGACAGGAAGAAGCCTGAAAATCCCAACAGCTACAGGGTTAGGAAGAGGGAGAACTTCAAGCTACAACGTGAGAAAAAGAAAGCAAGAAAGGAAGGCTATATTCTTCAAAACAAACCACAACTGGTGCTTGCATCTGCTGATAATGGTGCAGAGACCAATCCTCTTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0010033 GO:0031967 GO:0031975 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L27

Protein Analysis

184

Amino Acids

19.88

Weight (kDa)

10.47

Isoelectric Point (pI)

29.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L27	PF01016	64 - 130	4.8e-26	Ribosomal L27 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0009984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40950
fragaria_vesca	FvH4_6g53590 FvH4_6g53590
malus_domestica	MD00G1153700.v1.1 MD09G1010200.v1.1 MD17G1000400.v1.1
prunus_persica	Prupe.3G306900_v2.0.a1 Prupe.3G306900_v2.0.a1
pyrus_communis	pycom17g00840
rosa_chinensis	RchiOBHm_Chr2g0175661
rosa_laevigata	RLG00000022346 RLG00000022352
rosa_multiflora	Rmu_sc0000998.1_g000018
rosa_roxburghii	Rroxscaffold_2G00077170
rosa_rugosa	Rorug02G0586900 Rorug02G0587100
rosa_samantha	Rh2AG665800 Rh2BG676900 Rh2CG640200 Rh2DG690800
rosa_wichuraiana	Rw2G054600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	284
AccII	CGCG	2 cut(s)	11, 194
AciI	CCGC	2 cut(s)	5, 89
AcoI	YGGCCR	1 cut(s)	211
AcuI	CTGAAG	1 cut(s)	88
AcyI	GRCGYC	1 cut(s)	225
AgsI	TTSAA	4 cut(s)	25, 188, 439, 488
AjnI	CCWGG	1 cut(s)	243
AluBI	AGCT	7 cut(s)	60, 66, 75, 142, 209, 411, 442
AluI	AGCT	7 cut(s)	60, 66, 75, 142, 209, 411, 442
Alw21I	GWGCWC	1 cut(s)	62
Alw26I	GTCTC	1 cut(s)	527
AoxI	GGCC	2 cut(s)	133, 211
ApaI	GGGCCC	1 cut(s)	137
AspLEI	GCGC	1 cut(s)	196
AspS9I	GGNCC	4 cut(s)	133, 134, 325, 377
AsuHPI	GGTGA	2 cut(s)	122, 251
AvaII	GGWCC	2 cut(s)	325, 377
BaeGI	GKGCMC	1 cut(s)	137
BalI	TGGCCA	1 cut(s)	213
BanI	GGYRCC	1 cut(s)	284
BanII	GRGCYC	3 cut(s)	62, 122, 137
Bbv12I	GWGCWC	1 cut(s)	62
BccI	CCATC	3 cut(s)	43, 272, 344
BciT130I	CCWGG	1 cut(s)	245
BcoDI	GTCTC	1 cut(s)	527
BfaI	CTAG	1 cut(s)	29
BfmI	CTRYAG	1 cut(s)	412
Bme1390I	CCNGG	1 cut(s)	245
Bme18I	GGWCC	2 cut(s)	325, 377
BmgT120I	GGNCC	4 cut(s)	133, 134, 325, 377
BmiI	GGNNCC	4 cut(s)	121, 135, 262, 286
BmrFI	CCNGG	1 cut(s)	245
BmsI	GCATC	1 cut(s)	521
BpuEI	CTTGAG	2 cut(s)	46, 55
BsaHI	GRCGYC	1 cut(s)	225
BsaI	GGTCTC	1 cut(s)	527
BsaJI	CCNNGG	1 cut(s)	295
BsaXI	ACNNNNNCTCC	2 cut(s)	245, 275
Bse118I	RCCGGY	1 cut(s)	257
Bse1I	ACTGG	1 cut(s)	507
BseBI	CCWGG	1 cut(s)	245
BseDI	CCNNGG	1 cut(s)	295
BseGI	GGATG	1 cut(s)	54
BseMII	CTCAG	1 cut(s)	47
BseNI	ACTGG	1 cut(s)	507
BseRI	GAGGAG	2 cut(s)	58, 85
BseSI	GKGCMC	1 cut(s)	137
BsgI	GTGCAG	1 cut(s)	549
Bsh1236I	CGCG	2 cut(s)	11, 194
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	2 cut(s)	135, 213
BshNI	GGYRCC	1 cut(s)	284
BsiEI	CGRYCG	1 cut(s)	9
BsiHKAI	GWGCWC	1 cut(s)	62
BsiSI	CCGG	1 cut(s)	258
BsmAI	GTCTC	1 cut(s)	527
BsmI	GAATGC	1 cut(s)	38
BsnI	GGCC	2 cut(s)	135, 213
Bso31I	GGTCTC	1 cut(s)	527
Bsp120I	GGGCCC	1 cut(s)	133
Bsp1286I	GDGCHC	3 cut(s)	62, 122, 137
Bsp19I	CCATGG	1 cut(s)	295
BspACI	CCGC	2 cut(s)	5, 89
BspANI	GGCC	2 cut(s)	135, 213
BspCNI	CTCAG	1 cut(s)	48
BspFNI	CGCG	2 cut(s)	11, 194
BspLI	GGNNCC	4 cut(s)	121, 135, 262, 286
BspQI	GCTCTTC	1 cut(s)	82
BspT107I	GGYRCC	1 cut(s)	284
BspTNI	GGTCTC	1 cut(s)	527
BsrFI	RCCGGY	1 cut(s)	257
BsrI	ACTGG	1 cut(s)	507
BssAI	RCCGGY	1 cut(s)	257
BssECI	CCNNGG	1 cut(s)	295
BssNI	GRCGYC	1 cut(s)	225
BssT1I	CCWWGG	1 cut(s)	295
Bst2UI	CCWGG	1 cut(s)	245
Bst4CI	ACNGT	1 cut(s)	239
Bst6I	CTCTTC	2 cut(s)	82, 419
BstACI	GRCGYC	1 cut(s)	225
BstC8I	GCNNGC	3 cut(s)	211, 259, 510
BstDEI	CTNAG	1 cut(s)	56
BstDSI	CCRYGG	1 cut(s)	295
BstEII	GGTNACC	1 cut(s)	239
BstF5I	GGATG	1 cut(s)	54
BstFNI	CGCG	2 cut(s)	11, 194
BstHHI	GCGC	1 cut(s)	196
BstMAI	GTCTC	1 cut(s)	527
BstMCI	CGRYCG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	2 cut(s)	72, 148
BstNI	CCWGG	1 cut(s)	245
BstPI	GGTNACC	1 cut(s)	239
BstSCI	CCNGG	1 cut(s)	243
BstSFI	CTRYAG	1 cut(s)	412
BstSLI	GKGCMC	1 cut(s)	137
BstUI	CGCG	2 cut(s)	11, 194
BsuRI	GGCC	2 cut(s)	135, 213
BtgI	CCRYGG	1 cut(s)	295
BtsCI	GGATG	1 cut(s)	54
Cac8I	GCNNGC	3 cut(s)	211, 259, 510
CfoI	GCGC	1 cut(s)	196
Cfr10I	RCCGGY	1 cut(s)	257
Cfr13I	GGNCC	4 cut(s)	133, 134, 325, 377
CseI	GACGC	1 cut(s)	214
CsiI	ACCWGGT	1 cut(s)	243
CviAII	CATG	1 cut(s)	296
DdeI	CTNAG	1 cut(s)	56
EaeI	YGGCCR	1 cut(s)	211
Eam1104I	CTCTTC	2 cut(s)	82, 419
EarI	CTCTTC	2 cut(s)	82, 419
Ecl136II	GAGCTC	1 cut(s)	60
Eco130I	CCWWGG	1 cut(s)	295
Eco24I	GRGCYC	3 cut(s)	62, 122, 137
Eco31I	GGTCTC	1 cut(s)	527
Eco47I	GGWCC	2 cut(s)	325, 377
Eco53kI	GAGCTC	1 cut(s)	60
Eco57I	CTGAAG	1 cut(s)	88
Eco91I	GGTNACC	1 cut(s)	239
EcoICRI	GAGCTC	1 cut(s)	60
EcoO65I	GGTNACC	1 cut(s)	239
EcoRII	CCWGG	1 cut(s)	243
EcoT14I	CCWWGG	1 cut(s)	295
EcoT38I	GRGCYC	3 cut(s)	62, 122, 137
ErhI	CCWWGG	1 cut(s)	295
FaeI	CATG	1 cut(s)	299
FaiI	YATR	6 cut(s)	17, 272, 297, 330, 375, 480
FalI	AAGNNNNNCTT	4 cut(s)	64, 96, 131, 163
FatI	CATG	1 cut(s)	295
FauI	CCCGC	1 cut(s)	96
FokI	GGATG	1 cut(s)	61
FriOI	GRGCYC	3 cut(s)	62, 122, 137
FspBI	CTAG	1 cut(s)	29
GlaI	GCGC	1 cut(s)	195
HaeIII	GGCC	2 cut(s)	135, 213
HapII	CCGG	1 cut(s)	258
HgaI	GACGC	1 cut(s)	214
HhaI	GCGC	1 cut(s)	196
Hin1I	GRCGYC	1 cut(s)	225
Hin1II	CATG	1 cut(s)	299
Hin6I	GCGC	1 cut(s)	194
HinP1I	GCGC	1 cut(s)	194
HinfI	GANTC	1 cut(s)	184
HpaII	CCGG	1 cut(s)	258
HphI	GGTGA	2 cut(s)	122, 251
Hpy188I	TCNGA	4 cut(s)	35, 44, 57, 107
Hpy188III	TCNNGA	1 cut(s)	229
HpyAV	CCTTC	1 cut(s)	467
HpyCH4III	ACNGT	1 cut(s)	239
HpyCH4IV	ACGT	2 cut(s)	274, 448
HpyCH4V	TGCA	2 cut(s)	512, 530
HpyF10VI	GCNNNNNNNGC	2 cut(s)	72, 148
HpyF3I	CTNAG	1 cut(s)	56
HpySE526I	ACGT	2 cut(s)	274, 448
Hsp92I	GRCGYC	1 cut(s)	225
Hsp92II	CATG	1 cut(s)	299
HspAI	GCGC	1 cut(s)	194
KroI	GCCGGC	1 cut(s)	257
KroNI	GCCGGC	1 cut(s)	259
LguI	GCTCTTC	1 cut(s)	82
LmnI	GCTCC	5 cut(s)	35, 71, 125, 206, 266
LpnPI	CCDG	9 cut(s)	195, 230, 257, 271, 370, 393, 400, 408, 488
LweI	GCATC	1 cut(s)	521
MabI	ACCWGGT	1 cut(s)	243
MaeI	CTAG	1 cut(s)	29
MaeII	ACGT	2 cut(s)	274, 448
MaeIII	GTNAC	1 cut(s)	239
MboII	GAAGA	7 cut(s)	69, 72, 75, 94, 400, 436, 476
MfeI	CAATTG	1 cut(s)	128
MhlI	GDGCHC	3 cut(s)	62, 122, 137
MlsI	TGGCCA	1 cut(s)	213
MluCI	AATT	1 cut(s)	128
MluNI	TGGCCA	1 cut(s)	213
MmeI	TCCRAC	1 cut(s)	13
MnlI	CCTC	7 cut(s)	38, 79, 101, 103, 106, 420, 552
Mox20I	TGGCCA	1 cut(s)	213
MroNI	GCCGGC	1 cut(s)	257
MscI	TGGCCA	1 cut(s)	213
MseI	TTAA	1 cut(s)	360
Msp20I	TGGCCA	1 cut(s)	213
MspI	CCGG	1 cut(s)	258
MspR9I	CCNGG	1 cut(s)	245
MunI	CAATTG	1 cut(s)	128
Mva1269I	GAATGC	1 cut(s)	38
MvaI	CCWGG	1 cut(s)	245
MvnI	CGCG	2 cut(s)	11, 194
MwoI	GCNNNNNNNGC	2 cut(s)	72, 148
NaeI	GCCGGC	1 cut(s)	259
NcoI	CCATGG	1 cut(s)	295
NgoMIV	GCCGGC	1 cut(s)	257
NlaIII	CATG	1 cut(s)	299
NlaIV	GGNNCC	4 cut(s)	121, 135, 262, 286
NmeAIII	GCCGAG	1 cut(s)	201
NmuCI	GTSAC	1 cut(s)	239
PciSI	GCTCTTC	1 cut(s)	82
PctI	GAATGC	1 cut(s)	38
PdiI	GCCGGC	1 cut(s)	259
PfeI	GAWTC	1 cut(s)	184
PflFI	GACNNNGTC	1 cut(s)	245
Psp124BI	GAGCTC	1 cut(s)	62
Psp6I	CCWGG	1 cut(s)	243
PspEI	GGTNACC	1 cut(s)	239
PspGI	CCWGG	1 cut(s)	243
PspN4I	GGNNCC	4 cut(s)	121, 135, 262, 286
PspOMI	GGGCCC	1 cut(s)	133
PspPI	GGNCC	4 cut(s)	133, 134, 325, 377
PsyI	GACNNNGTC	1 cut(s)	245
SacI	GAGCTC	1 cut(s)	62
SapI	GCTCTTC	1 cut(s)	82
SaqAI	TTAA	1 cut(s)	360
Sau96I	GGNCC	4 cut(s)	133, 134, 325, 377
ScrFI	CCNGG	1 cut(s)	245
SduI	GDGCHC	3 cut(s)	62, 122, 137
SexAI	ACCWGGT	1 cut(s)	243
SfaNI	GCATC	1 cut(s)	521
SfcI	CTRYAG	1 cut(s)	412
SinI	GGWCC	2 cut(s)	325, 377
SmlI	CTYRAG	2 cut(s)	61, 70
SmoI	CTYRAG	2 cut(s)	61, 70
Sse9I	AATT	1 cut(s)	128
SsiI	CCGC	2 cut(s)	5, 89
SspMI	CTAG	1 cut(s)	29
SstI	GAGCTC	1 cut(s)	62
StyD4I	CCNGG	1 cut(s)	243
StyI	CCWWGG	1 cut(s)	295
TaaI	ACNGT	1 cut(s)	239
TaiI	ACGT	2 cut(s)	277, 451
TasI	AATT	1 cut(s)	128
TfiI	GAWTC	1 cut(s)	184
Tru1I	TTAA	1 cut(s)	360
Tru9I	TTAA	1 cut(s)	360
TseFI	GTSAC	1 cut(s)	239
Tsp45I	GTSAC	1 cut(s)	239
TspGWI	ACGGA	1 cut(s)	112
Tth111I	GACNNNGTC	1 cut(s)	245
VpaK11BI	GGWCC	2 cut(s)	325, 377
XspI	CTAG	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.