Tyrosyl-DNA phosphodiesterase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G15170 |
| fragaria_vesca | FvH4_3g02650 FvH4_3g02650 |
| malus_domestica | MD10G1314700.v1.1 |
| prunus_persica | Prupe.4G026100_v2.0.a1 Prupe.4G026100_v2.0.a1 |
| pyrus_communis | pycom10g26680 |
| rosa_chinensis | RchiOBHm_Chr5g0003961 |
| rosa_laevigata | RLG00000031190 RLG00000031192 |
| rosa_multiflora | Rmu_sc0000547.1_g000008 |
| rosa_roxburghii | Rroxscaffold_1G00072010 |
| rosa_rugosa | Rorug04G0408200.1 Rorug04G0408300.1 Rorug04G0408400 Rorug04G0408500 |
| rosa_samantha | Rh5AG036200 Rh5BG035100 Rh5CG038800 Rh5DG034700 |
| rosa_wichuraiana | Rw5G003300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1412 |
| AbsI | CCTCGAGG | 1 cut(s) | 912 |
| Acc16I | TGCGCA | 1 cut(s) | 357 |
| Acc36I | ACCTGC | 1 cut(s) | 748 |
| AccI | GTMKAC | 1 cut(s) | 720 |
| AccII | CGCG | 1 cut(s) | 1993 |
| AclWI | GGATC | 2 cut(s) | 1324, 1681 |
| AcoI | YGGCCR | 6 cut(s) | 103, 192, 1079, 1549, 1790, 1988 |
| AcsI | RAATTY | 2 cut(s) | 526, 1852 |
| AcuI | CTGAAG | 4 cut(s) | 429, 1611, 1890, 1944 |
| AfaI | GTAC | 6 cut(s) | 802, 933, 1207, 1259, 1520, 1753 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 379, 889, 1028, 1109, 1761 |
| AflII | CTTAAG | 2 cut(s) | 1073, 1510 |
| AflIII | ACRYGT | 1 cut(s) | 1996 |
| AgsI | TTSAA | 8 cut(s) | 63, 319, 387, 619, 1043, 1120, 1141, 1356 |
| AjiI | CACGTC | 1 cut(s) | 673 |
| AjnI | CCWGG | 4 cut(s) | 1189, 1251, 1396, 1649 |
| AleI | CACNNNNGTG | 2 cut(s) | 279, 1075 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 12, 44, 1458, 1490 |
| Alw21I | GWGCWC | 3 cut(s) | 453, 1072, 1660 |
| Alw44I | GTGCAC | 1 cut(s) | 1068 |
| AlwI | GGATC | 2 cut(s) | 1324, 1681 |
| Ama87I | CYCGRG | 1 cut(s) | 912 |
| AoxI | GGCC | 8 cut(s) | 103, 192, 891, 1079, 1418, 1549, 1790, 1988 |
| ApaLI | GTGCAC | 1 cut(s) | 1068 |
| ApeKI | GCWGC | 3 cut(s) | 501, 1163, 1646 |
| ApoI | RAATTY | 2 cut(s) | 526, 1852 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1505 |
| AspA2I | CCTAGG | 1 cut(s) | 1312 |
| AspLEI | GCGC | 1 cut(s) | 358 |
| AspS9I | GGNCC | 3 cut(s) | 89, 1394, 1948 |
| AsuC2I | CCSGG | 1 cut(s) | 303 |
| AsuHPI | GGTGA | 3 cut(s) | 293, 800, 806 |
| AsuII | TTCGAA | 1 cut(s) | 707 |
| AvaI | CYCGRG | 1 cut(s) | 912 |
| AvaII | GGWCC | 3 cut(s) | 89, 1394, 1948 |
| AvrII | CCTAGG | 1 cut(s) | 1312 |
| BaeGI | GKGCMC | 1 cut(s) | 1072 |
| BanII | GRGCYC | 1 cut(s) | 1660 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1136, 1168 |
| BbsI | GAAGAC | 1 cut(s) | 60 |
| Bbv12I | GWGCWC | 3 cut(s) | 453, 1072, 1660 |
| BbvCI | CCTCAGC | 1 cut(s) | 486 |
| BbvI | GCAGC | 3 cut(s) | 513, 1175, 1633 |
| BccI | CCATC | 6 cut(s) | 194, 539, 791, 1330, 1524, 1528 |
| BceAI | ACGGC | 4 cut(s) | 170, 179, 1705, 1805 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 687, 721 |
| BciT130I | CCWGG | 4 cut(s) | 1191, 1253, 1398, 1651 |
| BciVI | GTATCC | 1 cut(s) | 918 |
| BcnI | CCSGG | 1 cut(s) | 303 |
| BfaI | CTAG | 5 cut(s) | 47, 237, 446, 1313, 1448 |
| BfmI | CTRYAG | 1 cut(s) | 663 |
| BfrI | CTTAAG | 2 cut(s) | 1073, 1510 |
| BfuAI | ACCTGC | 1 cut(s) | 748 |
| BfuI | GTATCC | 1 cut(s) | 918 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 191, 1548 |
| BisI | GCNGC | 8 cut(s) | 106, 145, 502, 1164, 1461, 1552, 1647, 1991 |
| BlnI | CCTAGG | 1 cut(s) | 1312 |
| BlpI | GCTNAGC | 1 cut(s) | 1341 |
| BlsI | GCNGC | 8 cut(s) | 107, 146, 503, 1165, 1462, 1553, 1648, 1992 |
| BmcAI | AGTACT | 1 cut(s) | 1520 |
| Bme1390I | CCNGG | 5 cut(s) | 303, 1191, 1253, 1398, 1651 |
| Bme18I | GGWCC | 3 cut(s) | 89, 1394, 1948 |
| BmeT110I | CYCGRG | 1 cut(s) | 912 |
| BmgBI | CACGTC | 1 cut(s) | 673 |
| BmgT120I | GGNCC | 3 cut(s) | 89, 1394, 1948 |
| BmiI | GGNNCC | 6 cut(s) | 30, 205, 466, 1404, 1767, 1949 |
| BmrFI | CCNGG | 5 cut(s) | 303, 1191, 1253, 1398, 1651 |
| BmrI | ACTGGG | 1 cut(s) | 1531 |
| BmsI | GCATC | 8 cut(s) | 166, 343, 978, 1022, 1190, 1358, 1430, 1817 |
| BmuI | ACTGGG | 1 cut(s) | 1531 |
| BpiI | GAAGAC | 1 cut(s) | 60 |
| BpmI | CTGGAG | 2 cut(s) | 1235, 1646 |
| Bpu10I | CCTNAGC | 1 cut(s) | 486 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1341 |
| Bpu14I | TTCGAA | 1 cut(s) | 707 |
| BpuEI | CTTGAG | 1 cut(s) | 2001 |
| BpuMI | CCSGG | 1 cut(s) | 303 |
| Bsa29I | ATCGAT | 1 cut(s) | 726 |
| BsaAI | YACGTR | 1 cut(s) | 440 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 154, 184 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 379, 889, 1028, 1109, 1761 |
| Bse118I | RCCGGY | 1 cut(s) | 1950 |
| Bse1I | ACTGG | 5 cut(s) | 810, 965, 1526, 1552, 1755 |
| Bse3DI | GCAATG | 3 cut(s) | 857, 1165, 1569 |
| BseBI | CCWGG | 4 cut(s) | 1191, 1253, 1398, 1651 |
| BseCI | ATCGAT | 1 cut(s) | 726 |
| BseGI | GGATG | 6 cut(s) | 205, 993, 1037, 1330, 1341, 1539 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 379, 889, 1028, 1109, 1761 |
| BseMI | GCAATG | 3 cut(s) | 857, 1165, 1569 |
| BseMII | CTCAG | 4 cut(s) | 477, 504, 1078, 1332 |
| BseNI | ACTGG | 5 cut(s) | 810, 965, 1526, 1552, 1755 |
| BseRI | GAGGAG | 4 cut(s) | 431, 930, 1278, 1297 |
| BseSI | GKGCMC | 1 cut(s) | 1072 |
| BseX3I | CGGCCG | 1 cut(s) | 103 |
| BseXI | GCAGC | 3 cut(s) | 513, 1175, 1633 |
| BseYI | CCCAGC | 1 cut(s) | 1908 |
| Bsh1236I | CGCG | 1 cut(s) | 1993 |
| Bsh1285I | CGRYCG | 1 cut(s) | 106 |
| BshFI | GGCC | 8 cut(s) | 105, 194, 893, 1081, 1420, 1551, 1792, 1990 |
| BshVI | ATCGAT | 1 cut(s) | 726 |
| BsiEI | CGRYCG | 1 cut(s) | 106 |
| BsiHKAI | GWGCWC | 3 cut(s) | 453, 1072, 1660 |
| BsiHKCI | CYCGRG | 1 cut(s) | 912 |
| BsiSI | CCGG | 3 cut(s) | 302, 1082, 1951 |
| BslFI | GGGAC | 6 cut(s) | 683, 749, 889, 1172, 1239, 1961 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 379, 889, 1028, 1109, 1761 |
| BsmFI | GGGAC | 6 cut(s) | 683, 749, 889, 1172, 1239, 1961 |
| BsmI | GAATGC | 1 cut(s) | 238 |
| BsnI | GGCC | 8 cut(s) | 105, 194, 893, 1081, 1420, 1551, 1792, 1990 |
| BsoBI | CYCGRG | 1 cut(s) | 912 |
| Bsp119I | TTCGAA | 1 cut(s) | 707 |
| Bsp1286I | GDGCHC | 3 cut(s) | 453, 1072, 1660 |
| Bsp1407I | TGTACA | 1 cut(s) | 931 |
| Bsp143I | GATC | 3 cut(s) | 1009, 1316, 1686 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1341 |
| Bsp19I | CCATGG | 2 cut(s) | 277, 1001 |
| BspANI | GGCC | 8 cut(s) | 105, 194, 893, 1081, 1420, 1551, 1792, 1990 |
| BspCNI | CTCAG | 4 cut(s) | 478, 505, 1077, 1333 |
| BspDI | ATCGAT | 1 cut(s) | 726 |
| BspFNI | CGCG | 1 cut(s) | 1993 |
| BspHI | TCATGA | 1 cut(s) | 2024 |
| BspLI | GGNNCC | 6 cut(s) | 30, 205, 466, 1404, 1767, 1949 |
| BspMI | ACCTGC | 1 cut(s) | 748 |
| BspPI | GGATC | 2 cut(s) | 1324, 1681 |
| BspT104I | TTCGAA | 1 cut(s) | 707 |
| BspTI | CTTAAG | 2 cut(s) | 1073, 1510 |
| BsrDI | GCAATG | 3 cut(s) | 857, 1165, 1569 |
| BsrFI | RCCGGY | 1 cut(s) | 1950 |
| BsrGI | TGTACA | 1 cut(s) | 931 |
| BsrI | ACTGG | 5 cut(s) | 810, 965, 1526, 1552, 1755 |
| BssAI | RCCGGY | 1 cut(s) | 1950 |
| BssMI | GATC | 3 cut(s) | 1009, 1316, 1686 |
| BssT1I | CCWWGG | 7 cut(s) | 85, 277, 888, 976, 1001, 1312, 1937 |
| Bst2UI | CCWGG | 4 cut(s) | 1191, 1253, 1398, 1651 |
| Bst4CI | ACNGT | 4 cut(s) | 333, 435, 1426, 1680 |
| Bst6I | CTCTTC | 1 cut(s) | 812 |
| BstAFI | CTTAAG | 2 cut(s) | 1073, 1510 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1032 |
| BstAUI | TGTACA | 1 cut(s) | 931 |
| BstBAI | YACGTR | 1 cut(s) | 440 |
| BstBI | TTCGAA | 1 cut(s) | 707 |
| BstC8I | GCNNGC | 5 cut(s) | 149, 745, 831, 1347, 1540 |
| BstDEI | CTNAG | 7 cut(s) | 140, 486, 513, 537, 1064, 1341, 1637 |
| BstDSI | CCRYGG | 3 cut(s) | 195, 277, 1001 |
| BstF5I | GGATG | 6 cut(s) | 205, 993, 1037, 1330, 1341, 1539 |
| BstFNI | CGCG | 1 cut(s) | 1993 |
| BstHHI | GCGC | 1 cut(s) | 358 |
| BstKTI | GATC | 3 cut(s) | 1012, 1319, 1689 |
| BstMBI | GATC | 3 cut(s) | 1009, 1316, 1686 |
| BstMCI | CGRYCG | 1 cut(s) | 106 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 191, 1032, 1346, 1469, 1548, 1655, 1708, 1717, 2018 |
| BstNI | CCWGG | 4 cut(s) | 1191, 1253, 1398, 1651 |
| BstNSI | RCATGY | 3 cut(s) | 747, 773, 1734 |
| BstSCI | CCNGG | 5 cut(s) | 301, 1189, 1251, 1396, 1649 |
| BstSFI | CTRYAG | 1 cut(s) | 663 |
| BstSLI | GKGCMC | 1 cut(s) | 1072 |
| BstUI | CGCG | 1 cut(s) | 1993 |
| BstV1I | GCAGC | 3 cut(s) | 513, 1175, 1633 |
| BstV2I | GAAGAC | 1 cut(s) | 60 |
| BstX2I | RGATCY | 1 cut(s) | 1316 |
| BstYI | RGATCY | 1 cut(s) | 1316 |
| BstZI | CGGCCG | 1 cut(s) | 103 |
| Bsu15I | ATCGAT | 1 cut(s) | 726 |
| BsuI | GTATCC | 1 cut(s) | 918 |
| BsuRI | GGCC | 8 cut(s) | 105, 194, 893, 1081, 1420, 1551, 1792, 1990 |
| BsuTUI | ATCGAT | 1 cut(s) | 726 |
| BtgI | CCRYGG | 3 cut(s) | 195, 277, 1001 |
| BtrI | CACGTC | 1 cut(s) | 673 |
| BtsCI | GGATG | 6 cut(s) | 205, 993, 1037, 1330, 1341, 1539 |
| BtsI | GCAGTG | 2 cut(s) | 162, 1173 |
| BtsIMutI | CAGTG | 6 cut(s) | 162, 329, 803, 1072, 1173, 1920 |
| BveI | ACCTGC | 1 cut(s) | 748 |
| Cac8I | GCNNGC | 5 cut(s) | 149, 745, 831, 1347, 1540 |
| CciI | TCATGA | 1 cut(s) | 2024 |
| CfoI | GCGC | 1 cut(s) | 358 |
| Cfr10I | RCCGGY | 1 cut(s) | 1950 |
| Cfr13I | GGNCC | 3 cut(s) | 89, 1394, 1948 |
| ClaI | ATCGAT | 1 cut(s) | 726 |
| CseI | GACGC | 2 cut(s) | 886, 2010 |
| Csp6I | GTAC | 6 cut(s) | 801, 932, 1206, 1258, 1519, 1752 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 965, 1000 |
| CviQI | GTAC | 6 cut(s) | 801, 932, 1206, 1258, 1519, 1752 |
| DdeI | CTNAG | 7 cut(s) | 140, 486, 513, 537, 1064, 1341, 1637 |
| DpnI | GATC | 3 cut(s) | 1011, 1318, 1688 |
| DpnII | GATC | 3 cut(s) | 1009, 1316, 1686 |
| DraI | TTTAAA | 1 cut(s) | 1726 |
| EaeI | YGGCCR | 6 cut(s) | 103, 192, 1079, 1549, 1790, 1988 |
| EagI | CGGCCG | 1 cut(s) | 103 |
| Eam1104I | CTCTTC | 1 cut(s) | 812 |
| EarI | CTCTTC | 1 cut(s) | 812 |
| EciI | GGCGGA | 1 cut(s) | 172 |
| Ecl136II | GAGCTC | 1 cut(s) | 1658 |
| EclXI | CGGCCG | 1 cut(s) | 103 |
| Eco130I | CCWWGG | 7 cut(s) | 85, 277, 888, 976, 1001, 1312, 1937 |
| Eco24I | GRGCYC | 1 cut(s) | 1660 |
| Eco32I | GATATC | 1 cut(s) | 1196 |
| Eco47I | GGWCC | 3 cut(s) | 89, 1394, 1948 |
| Eco52I | CGGCCG | 1 cut(s) | 103 |
| Eco53kI | GAGCTC | 1 cut(s) | 1658 |
| Eco57I | CTGAAG | 4 cut(s) | 429, 1611, 1890, 1944 |
| Eco88I | CYCGRG | 1 cut(s) | 912 |
| EcoICRI | GAGCTC | 1 cut(s) | 1658 |
| EcoRI | GAATTC | 1 cut(s) | 1852 |
| EcoRII | CCWGG | 4 cut(s) | 1189, 1251, 1396, 1649 |
| EcoRV | GATATC | 1 cut(s) | 1196 |
| EcoT14I | CCWWGG | 7 cut(s) | 85, 277, 888, 976, 1001, 1312, 1937 |
| EcoT38I | GRGCYC | 1 cut(s) | 1660 |
| ErhI | CCWWGG | 7 cut(s) | 85, 277, 888, 976, 1001, 1312, 1937 |
| FaqI | GGGAC | 6 cut(s) | 683, 749, 889, 1172, 1239, 1961 |
| FauI | CCCGC | 1 cut(s) | 774 |
| FauNDI | CATATG | 1 cut(s) | 1230 |
| FblI | GTMKAC | 1 cut(s) | 720 |
| Fnu4HI | GCNGC | 8 cut(s) | 106, 145, 502, 1164, 1461, 1552, 1647, 1991 |
| FokI | GGATG | 6 cut(s) | 212, 1000, 1044, 1337, 1348, 1546 |
| FriOI | GRGCYC | 1 cut(s) | 1660 |
| Fsp4HI | GCNGC | 8 cut(s) | 106, 145, 502, 1164, 1461, 1552, 1647, 1991 |
| FspAI | RTGCGCAY | 1 cut(s) | 357 |
| FspBI | CTAG | 5 cut(s) | 47, 237, 446, 1313, 1448 |
| FspI | TGCGCA | 1 cut(s) | 357 |
| GlaI | GCGC | 1 cut(s) | 357 |
| GluI | GCNGC | 8 cut(s) | 106, 145, 502, 1164, 1461, 1552, 1647, 1991 |
| GsaI | CCCAGC | 1 cut(s) | 1912 |
| GsuI | CTGGAG | 2 cut(s) | 1235, 1646 |
| HaeIII | GGCC | 8 cut(s) | 105, 194, 893, 1081, 1420, 1551, 1792, 1990 |
| HapII | CCGG | 3 cut(s) | 302, 1082, 1951 |
| HgaI | GACGC | 2 cut(s) | 886, 2010 |
| HhaI | GCGC | 1 cut(s) | 358 |
| Hin6I | GCGC | 1 cut(s) | 356 |
| HinP1I | GCGC | 1 cut(s) | 356 |
| HincII | GTYRAC | 1 cut(s) | 958 |
| HindII | GTYRAC | 1 cut(s) | 958 |
| HindIII | AAGCTT | 1 cut(s) | 1114 |
| HinfI | GANTC | 6 cut(s) | 517, 676, 841, 1796, 1828, 1859 |
| HpaII | CCGG | 3 cut(s) | 302, 1082, 1951 |
| HphI | GGTGA | 3 cut(s) | 293, 800, 806 |
| Hpy166II | GTNNAC | 7 cut(s) | 721, 803, 934, 958, 1070, 1260, 1484 |
| Hpy188III | TCNNGA | 7 cut(s) | 173, 1141, 1448, 1663, 1740, 1812, 2025 |
| Hpy8I | GTNNAC | 7 cut(s) | 721, 803, 934, 958, 1070, 1260, 1484 |
| HpyAV | CCTTC | 2 cut(s) | 20, 488 |
| HpyCH4III | ACNGT | 4 cut(s) | 333, 435, 1426, 1680 |
| HpyCH4IV | ACGT | 3 cut(s) | 439, 672, 1998 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 191, 1032, 1346, 1469, 1548, 1655, 1708, 1717, 2018 |
| HpyF3I | CTNAG | 7 cut(s) | 140, 486, 513, 537, 1064, 1341, 1637 |
| HpySE526I | ACGT | 3 cut(s) | 439, 672, 1998 |
| HspAI | GCGC | 1 cut(s) | 356 |
| Kzo9I | GATC | 3 cut(s) | 1009, 1316, 1686 |
| LmnI | GCTCC | 3 cut(s) | 456, 1402, 1655 |
| Lsp1109I | GCAGC | 3 cut(s) | 513, 1175, 1633 |
| LweI | GCATC | 8 cut(s) | 166, 343, 978, 1022, 1190, 1358, 1430, 1817 |
| MaeI | CTAG | 5 cut(s) | 47, 237, 446, 1313, 1448 |
| MaeII | ACGT | 3 cut(s) | 439, 672, 1998 |
| MaeIII | GTNAC | 4 cut(s) | 338, 435, 1589, 1825 |
| MalI | GATC | 3 cut(s) | 1011, 1318, 1688 |
| MboI | GATC | 3 cut(s) | 1009, 1316, 1686 |
| MboII | GAAGA | 7 cut(s) | 65, 356, 829, 1344, 1442, 1678, 1791 |
| MflI | RGATCY | 1 cut(s) | 1316 |
| MhlI | GDGCHC | 3 cut(s) | 453, 1072, 1660 |
| MlyI | GAGTC | 1 cut(s) | 1822 |
| MmeI | TCCRAC | 1 cut(s) | 153 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1505 |
| MseI | TTAA | 9 cut(s) | 222, 480, 947, 1052, 1074, 1095, 1175, 1511, 1725 |
| MslI | CAYNNNNRTG | 4 cut(s) | 279, 282, 576, 1075 |
| MspA1I | CMGCKG | 1 cut(s) | 1554 |
| MspCI | CTTAAG | 2 cut(s) | 1073, 1510 |
| MspI | CCGG | 3 cut(s) | 302, 1082, 1951 |
| MspR9I | CCNGG | 5 cut(s) | 303, 1191, 1253, 1398, 1651 |
| Mva1269I | GAATGC | 1 cut(s) | 238 |
| MvaI | CCWGG | 4 cut(s) | 1191, 1253, 1398, 1651 |
| MvnI | CGCG | 1 cut(s) | 1993 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 191, 1032, 1346, 1469, 1548, 1655, 1708, 1717, 2018 |
| NciI | CCSGG | 1 cut(s) | 303 |
| NcoI | CCATGG | 2 cut(s) | 277, 1001 |
| NdeI | CATATG | 1 cut(s) | 1230 |
| NdeII | GATC | 3 cut(s) | 1009, 1316, 1686 |
| NlaIV | GGNNCC | 6 cut(s) | 30, 205, 466, 1404, 1767, 1949 |
| NmuCI | GTSAC | 2 cut(s) | 435, 1825 |
| NsbI | TGCGCA | 1 cut(s) | 357 |
| NspI | RCATGY | 3 cut(s) | 747, 773, 1734 |
| NspV | TTCGAA | 1 cut(s) | 707 |
| OliI | CACNNNNGTG | 2 cut(s) | 279, 1075 |
| PaeI | GCATGC | 1 cut(s) | 747 |
| PaeR7I | CTCGAG | 1 cut(s) | 912 |
| PagI | TCATGA | 1 cut(s) | 2024 |
| PctI | GAATGC | 1 cut(s) | 238 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1505 |
| PfeI | GAWTC | 5 cut(s) | 517, 676, 841, 1796, 1859 |
| PflFI | GACNNNGTC | 1 cut(s) | 331 |
| PfoI | TCCNGGA | 1 cut(s) | 1251 |
| PkrI | GCNGC | 8 cut(s) | 107, 146, 503, 1165, 1462, 1553, 1648, 1992 |
| PleI | GAGTC | 1 cut(s) | 1822 |
| PpsI | GAGTC | 1 cut(s) | 1822 |
| Ppu21I | YACGTR | 1 cut(s) | 440 |
| PsiI | TTATAA | 1 cut(s) | 1412 |
| Psp124BI | GAGCTC | 1 cut(s) | 1660 |
| Psp6I | CCWGG | 4 cut(s) | 1189, 1251, 1396, 1649 |
| PspFI | CCCAGC | 1 cut(s) | 1908 |
| PspGI | CCWGG | 4 cut(s) | 1189, 1251, 1396, 1649 |
| PspN4I | GGNNCC | 6 cut(s) | 30, 205, 466, 1404, 1767, 1949 |
| PspPI | GGNCC | 3 cut(s) | 89, 1394, 1948 |
| PspXI | VCTCGAGB | 1 cut(s) | 912 |
| PsuI | RGATCY | 1 cut(s) | 1316 |
| PsyI | GACNNNGTC | 1 cut(s) | 331 |
| RsaI | GTAC | 6 cut(s) | 802, 933, 1207, 1259, 1520, 1753 |
| RsaNI | GTAC | 6 cut(s) | 801, 932, 1206, 1258, 1519, 1752 |
| RseI | CAYNNNNRTG | 4 cut(s) | 279, 282, 576, 1075 |
| SacI | GAGCTC | 1 cut(s) | 1660 |
| SaqAI | TTAA | 9 cut(s) | 222, 480, 947, 1052, 1074, 1095, 1175, 1511, 1725 |
| SatI | GCNGC | 8 cut(s) | 106, 145, 502, 1164, 1461, 1552, 1647, 1991 |
| Sau3AI | GATC | 3 cut(s) | 1009, 1316, 1686 |
| Sau96I | GGNCC | 3 cut(s) | 89, 1394, 1948 |
| ScaI | AGTACT | 1 cut(s) | 1520 |
| SchI | GAGTC | 1 cut(s) | 1822 |
| ScrFI | CCNGG | 5 cut(s) | 303, 1191, 1253, 1398, 1651 |
| SduI | GDGCHC | 3 cut(s) | 453, 1072, 1660 |
| SfaNI | GCATC | 8 cut(s) | 166, 343, 978, 1022, 1190, 1358, 1430, 1817 |
| SfcI | CTRYAG | 1 cut(s) | 663 |
| Sfr274I | CTCGAG | 1 cut(s) | 912 |
| SfuI | TTCGAA | 1 cut(s) | 707 |
| SinI | GGWCC | 3 cut(s) | 89, 1394, 1948 |
| SlaI | CTCGAG | 1 cut(s) | 912 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 279, 282, 576, 1075 |
| SmlI | CTYRAG | 4 cut(s) | 912, 1073, 1510, 2016 |
| SmoI | CTYRAG | 4 cut(s) | 912, 1073, 1510, 2016 |
| SphI | GCATGC | 1 cut(s) | 747 |
| SspI | AATATT | 1 cut(s) | 951 |
| SspMI | CTAG | 5 cut(s) | 47, 237, 446, 1313, 1448 |
| SstI | GAGCTC | 1 cut(s) | 1660 |
| StyD4I | CCNGG | 5 cut(s) | 301, 1189, 1251, 1396, 1649 |
| StyI | CCWWGG | 7 cut(s) | 85, 277, 888, 976, 1001, 1312, 1937 |
| TaaI | ACNGT | 4 cut(s) | 333, 435, 1426, 1680 |
| TaiI | ACGT | 3 cut(s) | 442, 675, 2001 |
| TaqI | TCGA | 3 cut(s) | 707, 726, 913 |
| TaqII | GACCGA | 1 cut(s) | 1382 |
| TatI | WGTACW | 3 cut(s) | 931, 1257, 1518 |
| TauI | GCSGC | 5 cut(s) | 108, 147, 1463, 1554, 1993 |
| TfiI | GAWTC | 5 cut(s) | 517, 676, 841, 1796, 1859 |
| Tru1I | TTAA | 9 cut(s) | 222, 480, 947, 1052, 1074, 1095, 1175, 1511, 1725 |
| Tru9I | TTAA | 9 cut(s) | 222, 480, 947, 1052, 1074, 1095, 1175, 1511, 1725 |
| TscAI | CASTG | 6 cut(s) | 169, 336, 810, 1072, 1173, 1927 |
| TseFI | GTSAC | 2 cut(s) | 435, 1825 |
| TseI | GCWGC | 3 cut(s) | 501, 1163, 1646 |
| Tsp45I | GTSAC | 2 cut(s) | 435, 1825 |
| TspDTI | ATGAA | 7 cut(s) | 773, 830, 858, 1229, 1247, 1851, 1911 |
| TspGWI | ACGGA | 3 cut(s) | 1119, 1679, 1758 |
| TspRI | CASTG | 6 cut(s) | 169, 336, 810, 1072, 1173, 1927 |
| Tth111I | GACNNNGTC | 1 cut(s) | 331 |
| Vha464I | CTTAAG | 2 cut(s) | 1073, 1510 |
| VneI | GTGCAC | 1 cut(s) | 1068 |
| VpaK11BI | GGWCC | 3 cut(s) | 89, 1394, 1948 |
| XapI | RAATTY | 2 cut(s) | 526, 1852 |
| XbaI | TCTAGA | 1 cut(s) | 1447 |
| XceI | RCATGY | 3 cut(s) | 747, 773, 1734 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1413 |
| XhoI | CTCGAG | 1 cut(s) | 912 |
| XmaJI | CCTAGG | 1 cut(s) | 1312 |
| XmiI | GTMKAC | 1 cut(s) | 720 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1505 |
| XspI | CTAG | 5 cut(s) | 47, 237, 446, 1313, 1448 |
| ZrmI | AGTACT | 1 cut(s) | 1520 |