Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0010258

Physical Location & Seq

Genomic Coordinates Reverse (-)

2428857 .. 2433524

Gene Structure 4668 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG035100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1914 bp

ATGCAACCAAGCATTCAACAATGGCTGACCTTCTGGAGTTCTGGTAGGACACTTGGTTCCCTTAAGCAACCACGTCCAAGAAGACGCTTCAATCCCCAAAATACCCCTCTCCCGGGGCCGGAATTCCATCGGCCGCAACTCCACCCCTTCCCTCACCGACAAGCGTCTCAGCCGCAACCACCTCTCCCTCACCGCCGCCGTGGCCGACGCCTCCTCCGCCGATTTGGTCGTGGAGGGAAGCAATCCGGTTGTGGGCAGTATATTTTTCAGTATAGGAAATTGTGTGGTGATAGTTATGAGAAGTCTTCAAATGGTGAAGAGAAGGCTGAGGAGTCTAGTCGAAAGCGGTCACATCAGTTAGAATGTGGGGAGAATGGTTCGAATTTGAAGCGTTTTAAGGGTGAGGTGGAAGGGAAGAGTGATGATGGTGGTGGTCGTGTGGAGGCGATACGGCATTTTCGTGTTCCTAAGGATAAGTTACCACAGACGTTTCGGCTTTTGAATGTGCAAGGACTGCCCCCGTGGGCGAATACCTCGTGTGTTTCTATAAAGGATGTGATTCAGGGAGACATCCTTTTTGCTGTCCTTTCCAATTACATGGTAGACCTTGATTGGCTGATACCTGCTTGTCCAACAGTTGCAAAAATCCCACATGTATTGGTTGTTCATGGTGAGGGTGATGGTACACTGGATTATATGAAGAGAAAGAAACCTGCAAATTGGATTCTACACAAACCACCATTGCCTATTTCATTTGGGACACACCACTCAAAGGCCATGCTTCTTGTTTATCCTCGAGGAGTGAGAATAATAGTACATACAGCAAACTTAATATTTGTTGATTGGAACAACAAAAGTCAAGGTTTGTGGATGCAAGATTTTCCCTGGAAAGATCAAAGTAATCCAAGCAAAGGTTGTGGATTTGAACATGACTTAATGGACTATCTCAGTGCACTGAAGTGGCCTGAGTTTTCTGTTAATTTGCCTACCCTGGGAACCTTCAATATAAATCCAGGATTTTTCAAGAAATTCGATTACAGCAGTGCAGCAGTGAGGCTAATTGCATCTGTCCCTGGATATCATACCGGTAATAACATGAAAAGGTGGGGACATATGAAACTACGTACTGTTCTCCAGGAGTGTACTTTTGATAAAGAGTTTCAGAAATCTCCTCTTGCTTATCAGTTCTCCTCCCTAGGTTCTTTGGATGAGAAATGGATGGCTGAGCTTGCACATTCAATGTCATCAGGTTTTTCGGATGATAAAACTCCTCTCGGTCCTGGGGAGCCACGTATAATATGGCCCACAGTAGAAGATGTCAGATGCTCTATAGAGGGTTATGCTGCTGGAAATGCTGTTCCAAGTCCAGCAAAGAATGTGGATAAAGATTTCTTGAAGAAGTACTGGGCAAGATGGAAGGCAAGCCACACTGGCCGCTGTCGTGCAATGCCACATATAAAGACATTTACTCGATACAGTGGTCAGAAACTTGCTTGGTTTTTGCTAACATCAGCGAATCTTAGCAAAGCTGCATGGGGAGCTCTCCAGAAGAATAATTCTCAACTCATGATCCGTTCTTATGAGCTTGGGGTGCTGTTTCTACCATATAAAACACGAAGTTCTGGATTTTCTTGTACCAGTAATGGGGTTCAATCTGAGGATAAATCTGAAGAGTCAGATAATTCGGAATCAAGGAGAAATAAACTAGTGACTCTGAACTGGCAAGGGAACAGGAACACAGATTCATCATCTGAAGTAATCACATTGCCTGTGCCCTATGAACTCCCTCCTCAACCATACACCACCCAAGATGTTCCTTGGTCATGGGACCGGCGATACACCAAGAAAGATGTTTATGGTCAAGTTTGGCCACGGCAAGTTCAGCTGTATGCAGCAGCTCTTCAAGATTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000012 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008081 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016787 GO:0016788 GO:0017005 GO:0033554 GO:0034641 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0070259 GO:0071704 GO:0071944 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA Tyr-DNA_phospho

Protein Analysis

637

Amino Acids

72.56

Weight (kDa)

9.65

Isoelectric Point (pI)

56.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tyr-DNA_phospho	PF06087	164 - 601	6.3e-103	Tyrosyl-DNA phosphodiesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010258)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15170
fragaria_vesca	FvH4_3g02650 FvH4_3g02650
malus_domestica	MD10G1314700.v1.1
prunus_persica	Prupe.4G026100_v2.0.a1 Prupe.4G026100_v2.0.a1
pyrus_communis	pycom10g26680
rosa_chinensis	RchiOBHm_Chr5g0003961
rosa_laevigata	RLG00000031190 RLG00000031192
rosa_multiflora	Rmu_sc0000547.1_g000008
rosa_roxburghii	Rroxscaffold_1G00072010
rosa_rugosa	Rorug04G0408200.1 Rorug04G0408300.1 Rorug04G0408400 Rorug04G0408500
rosa_samantha	Rh5AG036200 Rh5BG035100 Rh5CG038800 Rh5DG034700
rosa_wichuraiana	Rw5G003300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	795
Acc36I	ACCTGC	2 cut(s)	631, 721
AccI	GTMKAC	1 cut(s)	603
AciI	CCGC	7 cut(s)	134, 173, 193, 196, 217, 346, 1435
AclWI	GGATC	1 cut(s)	1564
AcoI	YGGCCR	4 cut(s)	131, 202, 1432, 1868
AcsI	RAATTY	3 cut(s)	122, 382, 1028
AcuI	CTGAAG	3 cut(s)	977, 1689, 1773
AcyI	GRCGYC	1 cut(s)	208
AfaI	GTAC	6 cut(s)	685, 816, 1126, 1144, 1403, 1636
AfiI	CCNNNNNNNGG	8 cut(s)	112, 113, 118, 252, 772, 911, 992, 1644
AflII	CTTAAG	1 cut(s)	62
AflIII	ACRYGT	1 cut(s)	652
AgeI	ACCGGT	1 cut(s)	1085
AhlI	ACTAGT	1 cut(s)	1705
AjiI	CACGTC	1 cut(s)	74
AjnI	CCWGG	6 cut(s)	884, 990, 1012, 1072, 1134, 1279
AleI	CACNNNNGTG	1 cut(s)	958
AloI	GAACNNNNNNTCC	4 cut(s)	40, 72, 1341, 1373
AluBI	AGCT	6 cut(s)	1228, 1529, 1541, 1585, 1885, 1898
AluI	AGCT	6 cut(s)	1228, 1529, 1541, 1585, 1885, 1898
Alw21I	GWGCWC	2 cut(s)	955, 1543
Alw26I	GTCTC	2 cut(s)	171, 561
Alw44I	GTGCAC	1 cut(s)	951
AlwI	GGATC	1 cut(s)	1564
Ama87I	CYCGRG	2 cut(s)	112, 795
AoxI	GGCC	8 cut(s)	116, 131, 202, 774, 962, 1301, 1432, 1868
ApaLI	GTGCAC	1 cut(s)	951
ApeKI	GCWGC	5 cut(s)	1046, 1343, 1529, 1892, 1895
ApoI	RAATTY	3 cut(s)	122, 382, 1028
ArsI	GACNNNNNNTTYG	2 cut(s)	560, 592
AsiGI	ACCGGT	1 cut(s)	1085
AspA2I	CCTAGG	1 cut(s)	1195
AspS9I	GGNCC	4 cut(s)	116, 1277, 1302, 1828
AsuC2I	CCSGG	2 cut(s)	113, 114
AsuHPI	GGTGA	7 cut(s)	146, 182, 299, 326, 413, 683, 689
AsuII	TTCGAA	1 cut(s)	380
AvaI	CYCGRG	2 cut(s)	112, 795
AvaII	GGWCC	2 cut(s)	1277, 1828
AvrII	CCTAGG	1 cut(s)	1195
AxyI	CCTNAGG	1 cut(s)	468
BaeGI	GKGCMC	2 cut(s)	955, 1776
BaeI	ACNNNNGTAYC	2 cut(s)	1465, 1498
BalI	TGGCCA	1 cut(s)	1870
BanII	GRGCYC	1 cut(s)	1543
BauI	CACGAG	1 cut(s)	535
BbsI	GAAGAC	2 cut(s)	88, 297
Bbv12I	GWGCWC	2 cut(s)	955, 1543
BbvCI	CCTCAGC	1 cut(s)	327
BbvI	GCAGC	5 cut(s)	1058, 1330, 1516, 1904, 1907
BccI	CCATC	5 cut(s)	135, 419, 674, 1213, 1407
BceAI	ACGGC	3 cut(s)	183, 467, 1889
BciT130I	CCWGG	6 cut(s)	886, 992, 1014, 1074, 1136, 1281
BcnI	CCSGG	2 cut(s)	113, 114
BcoDI	GTCTC	2 cut(s)	171, 561
BcuI	ACTAGT	1 cut(s)	1705
BfaI	CTAG	3 cut(s)	336, 1196, 1706
BfmI	CTRYAG	1 cut(s)	1329
BfrI	CTTAAG	1 cut(s)	62
BfuAI	ACCTGC	2 cut(s)	631, 721
BglI	GCCNNNNNGGC	2 cut(s)	201, 1431
BisI	GCNGC	9 cut(s)	134, 173, 196, 1047, 1344, 1435, 1530, 1893, 1896
BlnI	CCTAGG	1 cut(s)	1195
BlpI	GCTNAGC	1 cut(s)	1224
BlsI	GCNGC	9 cut(s)	135, 174, 197, 1048, 1345, 1436, 1531, 1894, 1897
BmcAI	AGTACT	1 cut(s)	1403
Bme1390I	CCNGG	8 cut(s)	113, 114, 886, 992, 1014, 1074, 1136, 1281
Bme18I	GGWCC	2 cut(s)	1277, 1828
BmeT110I	CYCGRG	2 cut(s)	112, 795
BmgBI	CACGTC	1 cut(s)	74
BmgT120I	GGNCC	4 cut(s)	116, 1277, 1302, 1828
BmiI	GGNNCC	5 cut(s)	58, 117, 997, 1287, 1829
BmrFI	CCNGG	8 cut(s)	113, 114, 886, 992, 1014, 1074, 1136, 1281
BmrI	ACTGGG	1 cut(s)	1414
BmsI	GCATC	3 cut(s)	861, 1073, 1313
BmuI	ACTGGG	1 cut(s)	1414
BoxI	GACNNNNGTC	1 cut(s)	163
BpiI	GAAGAC	2 cut(s)	88, 297
BpmI	CTGGAG	3 cut(s)	55, 1118, 1529
Bpu10I	CCTNAGC	1 cut(s)	327
Bpu1102I	GCTNAGC	1 cut(s)	1224
Bpu14I	TTCGAA	1 cut(s)	380
BpuMI	CCSGG	2 cut(s)	113, 114
BsaAI	YACGTR	2 cut(s)	1124, 1292
BsaHI	GRCGYC	1 cut(s)	208
BsaWI	WCCGGW	2 cut(s)	245, 1085
BsaXI	ACNNNNNCTCC	6 cut(s)	28, 58, 168, 198, 198, 228
Bsc4I	CCNNNNNNNGG	8 cut(s)	112, 113, 118, 252, 772, 911, 992, 1644
Bse118I	RCCGGY	2 cut(s)	1085, 1830
Bse1I	ACTGG	5 cut(s)	693, 1409, 1435, 1638, 1724
Bse21I	CCTNAGG	1 cut(s)	468
Bse3DI	GCAATG	3 cut(s)	740, 1452, 1763
BseBI	CCWGG	6 cut(s)	886, 992, 1014, 1074, 1136, 1281
BseGI	GGATG	6 cut(s)	559, 570, 876, 1213, 1224, 1264
BseLI	CCNNNNNNNGG	8 cut(s)	112, 113, 118, 252, 772, 911, 992, 1644
BseMI	GCAATG	3 cut(s)	740, 1452, 1763
BseMII	CTCAG	6 cut(s)	182, 318, 957, 961, 1215, 1647
BseNI	ACTGG	5 cut(s)	693, 1409, 1435, 1638, 1724
BseRI	GAGGAG	7 cut(s)	203, 344, 813, 1161, 1180, 1260, 1779
BseSI	GKGCMC	2 cut(s)	955, 1776
BseX3I	CGGCCG	1 cut(s)	131
BseXI	GCAGC	5 cut(s)	1058, 1330, 1516, 1904, 1907
BsgI	GTGCAG	1 cut(s)	1065
Bsh1285I	CGRYCG	1 cut(s)	134
BshFI	GGCC	8 cut(s)	118, 133, 204, 776, 964, 1303, 1434, 1870
BshTI	ACCGGT	1 cut(s)	1085
BsiEI	CGRYCG	1 cut(s)	134
BsiHKAI	GWGCWC	2 cut(s)	955, 1543
BsiHKCI	CYCGRG	2 cut(s)	112, 795
BsiSI	CCGG	5 cut(s)	113, 119, 246, 1086, 1831
BslFI	GGGAC	4 cut(s)	772, 1055, 1122, 1841
BslI	CCNNNNNNNGG	8 cut(s)	112, 113, 118, 252, 772, 911, 992, 1644
BsmAI	GTCTC	2 cut(s)	171, 561
BsmBI	CGTCTC	1 cut(s)	171
BsmFI	GGGAC	4 cut(s)	772, 1055, 1122, 1841
BsmI	GAATGC	1 cut(s)	12
BsnI	GGCC	8 cut(s)	118, 133, 204, 776, 964, 1303, 1434, 1870
BsoBI	CYCGRG	2 cut(s)	112, 795
Bsp119I	TTCGAA	1 cut(s)	380
Bsp1286I	GDGCHC	3 cut(s)	955, 1543, 1776
Bsp143I	GATC	2 cut(s)	892, 1569
Bsp1720I	GCTNAGC	1 cut(s)	1224
BspACI	CCGC	7 cut(s)	134, 173, 193, 196, 217, 346, 1435
BspANI	GGCC	8 cut(s)	118, 133, 204, 776, 964, 1303, 1434, 1870
BspCNI	CTCAG	6 cut(s)	181, 319, 958, 960, 1216, 1648
BspHI	TCATGA	1 cut(s)	1566
BspLI	GGNNCC	5 cut(s)	58, 117, 997, 1287, 1829
BspMI	ACCTGC	2 cut(s)	631, 721
BspPI	GGATC	1 cut(s)	1564
BspQI	GCTCTTC	1 cut(s)	1905
BspT104I	TTCGAA	1 cut(s)	380
BspTI	CTTAAG	1 cut(s)	62
BsrDI	GCAATG	3 cut(s)	740, 1452, 1763
BsrFI	RCCGGY	2 cut(s)	1085, 1830
BsrI	ACTGG	5 cut(s)	693, 1409, 1435, 1638, 1724
BssAI	RCCGGY	2 cut(s)	1085, 1830
BssMI	GATC	2 cut(s)	892, 1569
BssNI	GRCGYC	1 cut(s)	208
BssSI	CACGAG	1 cut(s)	535
BssT1I	CCWWGG	2 cut(s)	1195, 1817
Bst2BI	CACGAG	1 cut(s)	535
Bst2UI	CCWGG	6 cut(s)	886, 992, 1014, 1074, 1136, 1281
Bst4CI	ACNGT	4 cut(s)	637, 1129, 1309, 1478
Bst6I	CTCTTC	5 cut(s)	312, 410, 695, 1665, 1905
BstACI	GRCGYC	1 cut(s)	208
BstAFI	CTTAAG	1 cut(s)	62
BstAPI	GCANNNNNTGC	1 cut(s)	514
BstBAI	YACGTR	2 cut(s)	1124, 1292
BstBI	TTCGAA	1 cut(s)	380
BstC8I	GCNNGC	2 cut(s)	1230, 1423
BstDEI	CTNAG	8 cut(s)	168, 327, 468, 947, 966, 1224, 1520, 1656
BstDSI	CCRYGG	3 cut(s)	199, 521, 1871
BstF5I	GGATG	6 cut(s)	559, 570, 876, 1213, 1224, 1264
BstKTI	GATC	2 cut(s)	895, 1572
BstMAI	GTCTC	2 cut(s)	171, 561
BstMBI	GATC	2 cut(s)	892, 1569
BstMCI	CGRYCG	1 cut(s)	134
BstMWI	GCNNNNNNNGC	9 cut(s)	201, 216, 514, 1229, 1352, 1431, 1538, 1591, 1882
BstNI	CCWGG	6 cut(s)	886, 992, 1014, 1074, 1136, 1281
BstNSI	RCATGY	1 cut(s)	656
BstPAI	GACNNNNGTC	1 cut(s)	163
BstSCI	CCNGG	8 cut(s)	111, 112, 884, 990, 1012, 1072, 1134, 1279
BstSFI	CTRYAG	1 cut(s)	1329
BstSLI	GKGCMC	2 cut(s)	955, 1776
BstSNI	TACGTA	1 cut(s)	1124
BstV1I	GCAGC	5 cut(s)	1058, 1330, 1516, 1904, 1907
BstV2I	GAAGAC	2 cut(s)	88, 297
BstXI	CCANNNNNNTGG	1 cut(s)	598
BstZI	CGGCCG	1 cut(s)	131
Bsu36I	CCTNAGG	1 cut(s)	468
BsuRI	GGCC	8 cut(s)	118, 133, 204, 776, 964, 1303, 1434, 1870
BtgI	CCRYGG	3 cut(s)	199, 521, 1871
BtrI	CACGTC	1 cut(s)	74
BtsCI	GGATG	6 cut(s)	559, 570, 876, 1213, 1224, 1264
BtsI	GCAGTG	2 cut(s)	1048, 1056
BtsIMutI	CAGTG	7 cut(s)	686, 953, 955, 1048, 1056, 1428, 1483
BveI	ACCTGC	2 cut(s)	631, 721
Cac8I	GCNNGC	2 cut(s)	1230, 1423
CciI	TCATGA	1 cut(s)	1566
Cfr10I	RCCGGY	2 cut(s)	1085, 1830
Cfr13I	GGNCC	4 cut(s)	116, 1277, 1302, 1828
Cfr9I	CCCGGG	1 cut(s)	112
CseI	GACGC	3 cut(s)	93, 153, 216
Csp6I	GTAC	6 cut(s)	684, 815, 1125, 1143, 1402, 1635
CspAI	ACCGGT	1 cut(s)	1085
CspCI	CAANNNNNGTGG	8 cut(s)	639, 674, 848, 883, 898, 933, 1359, 1394
CviAII	CATG	9 cut(s)	598, 653, 668, 778, 929, 1096, 1533, 1567, 1824
CviQI	GTAC	6 cut(s)	684, 815, 1125, 1143, 1402, 1635
DdeI	CTNAG	8 cut(s)	168, 327, 468, 947, 966, 1224, 1520, 1656
DpnI	GATC	2 cut(s)	894, 1571
DpnII	GATC	2 cut(s)	892, 1569
EaeI	YGGCCR	4 cut(s)	131, 202, 1432, 1868
EagI	CGGCCG	1 cut(s)	131
Eam1104I	CTCTTC	5 cut(s)	312, 410, 695, 1665, 1905
EarI	CTCTTC	5 cut(s)	312, 410, 695, 1665, 1905
EciI	GGCGGA	1 cut(s)	206
Ecl136II	GAGCTC	1 cut(s)	1541
EclXI	CGGCCG	1 cut(s)	131
Eco105I	TACGTA	1 cut(s)	1124
Eco130I	CCWWGG	2 cut(s)	1195, 1817
Eco24I	GRGCYC	1 cut(s)	1543
Eco32I	GATATC	1 cut(s)	1079
Eco47I	GGWCC	2 cut(s)	1277, 1828
Eco52I	CGGCCG	1 cut(s)	131
Eco53kI	GAGCTC	1 cut(s)	1541
Eco57I	CTGAAG	3 cut(s)	977, 1689, 1773
Eco81I	CCTNAGG	1 cut(s)	468
Eco88I	CYCGRG	2 cut(s)	112, 795
EcoICRI	GAGCTC	1 cut(s)	1541
EcoRI	GAATTC	1 cut(s)	122
EcoRII	CCWGG	6 cut(s)	884, 990, 1012, 1072, 1134, 1279
EcoRV	GATATC	1 cut(s)	1079
EcoT14I	CCWWGG	2 cut(s)	1195, 1817
EcoT38I	GRGCYC	1 cut(s)	1543
ErhI	CCWWGG	2 cut(s)	1195, 1817
Esp3I	CGTCTC	1 cut(s)	171
FaeI	CATG	9 cut(s)	601, 656, 671, 781, 932, 1099, 1536, 1570, 1827
FaqI	GGGAC	4 cut(s)	772, 1055, 1122, 1841
FatI	CATG	9 cut(s)	597, 652, 667, 777, 928, 1095, 1532, 1566, 1823
FauNDI	CATATG	1 cut(s)	1113
FblI	GTMKAC	1 cut(s)	603
Fnu4HI	GCNGC	9 cut(s)	134, 173, 196, 1047, 1344, 1435, 1530, 1893, 1896
FokI	GGATG	6 cut(s)	557, 566, 883, 1220, 1231, 1271
FriOI	GRGCYC	1 cut(s)	1543
Fsp4HI	GCNGC	9 cut(s)	134, 173, 196, 1047, 1344, 1435, 1530, 1893, 1896
FspBI	CTAG	3 cut(s)	336, 1196, 1706
GluI	GCNGC	9 cut(s)	134, 173, 196, 1047, 1344, 1435, 1530, 1893, 1896
GsuI	CTGGAG	3 cut(s)	55, 1118, 1529
HaeIII	GGCC	8 cut(s)	118, 133, 204, 776, 964, 1303, 1434, 1870
HapII	CCGG	5 cut(s)	113, 119, 246, 1086, 1831
HgaI	GACGC	3 cut(s)	93, 153, 216
Hin1I	GRCGYC	1 cut(s)	208
Hin1II	CATG	9 cut(s)	601, 656, 671, 781, 932, 1099, 1536, 1570, 1827
HinfI	GANTC	9 cut(s)	332, 559, 724, 1516, 1673, 1688, 1711, 1742, 1907
HpaII	CCGG	5 cut(s)	113, 119, 246, 1086, 1831
HphI	GGTGA	7 cut(s)	146, 182, 299, 326, 413, 683, 689
Hpy166II	GTNNAC	4 cut(s)	604, 686, 953, 1143
Hpy188III	TCNNGA	8 cut(s)	34, 1024, 1393, 1546, 1567, 1623, 1904, 1911
Hpy8I	GTNNAC	4 cut(s)	604, 686, 953, 1143
Hpy99I	CGWCG	1 cut(s)	210
HpyAV	CCTTC	6 cut(s)	40, 157, 316, 404, 1009, 1411
HpyCH4III	ACNGT	4 cut(s)	637, 1129, 1309, 1478
HpyCH4IV	ACGT	4 cut(s)	73, 488, 1123, 1291
HpyF10VI	GCNNNNNNNGC	9 cut(s)	201, 216, 514, 1229, 1352, 1431, 1538, 1591, 1882
HpyF3I	CTNAG	8 cut(s)	168, 327, 468, 947, 966, 1224, 1520, 1656
HpySE526I	ACGT	4 cut(s)	73, 488, 1123, 1291
Hsp92I	GRCGYC	1 cut(s)	208
Hsp92II	CATG	9 cut(s)	601, 656, 671, 781, 932, 1099, 1536, 1570, 1827
Kzo9I	GATC	2 cut(s)	892, 1569
LguI	GCTCTTC	1 cut(s)	1905
LmnI	GCTCC	2 cut(s)	1285, 1538
Lsp1109I	GCAGC	5 cut(s)	1058, 1330, 1516, 1904, 1907
LweI	GCATC	3 cut(s)	861, 1073, 1313
MaeI	CTAG	3 cut(s)	336, 1196, 1706
MaeII	ACGT	4 cut(s)	73, 488, 1123, 1291
MaeIII	GTNAC	3 cut(s)	348, 477, 1708
MalI	GATC	2 cut(s)	894, 1571
MboI	GATC	2 cut(s)	892, 1569
MhlI	GDGCHC	3 cut(s)	955, 1543, 1776
MlsI	TGGCCA	1 cut(s)	1870
MluNI	TGGCCA	1 cut(s)	1870
MlyI	GAGTC	3 cut(s)	341, 1682, 1705
MmeI	TCCRAC	1 cut(s)	656
Mox20I	TGGCCA	1 cut(s)	1870
MscI	TGGCCA	1 cut(s)	1870
MseI	TTAA	5 cut(s)	63, 396, 830, 935, 978
MslI	CAYNNNNRTG	2 cut(s)	459, 958
Msp20I	TGGCCA	1 cut(s)	1870
MspA1I	CMGCKG	2 cut(s)	1437, 1885
MspCI	CTTAAG	1 cut(s)	62
MspI	CCGG	5 cut(s)	113, 119, 246, 1086, 1831
MspR9I	CCNGG	8 cut(s)	113, 114, 886, 992, 1014, 1074, 1136, 1281
Mva1269I	GAATGC	1 cut(s)	12
MvaI	CCWGG	6 cut(s)	886, 992, 1014, 1074, 1136, 1281
MwoI	GCNNNNNNNGC	9 cut(s)	201, 216, 514, 1229, 1352, 1431, 1538, 1591, 1882
NciI	CCSGG	2 cut(s)	113, 114
NdeI	CATATG	1 cut(s)	1113
NdeII	GATC	2 cut(s)	892, 1569
NlaIII	CATG	9 cut(s)	601, 656, 671, 781, 932, 1099, 1536, 1570, 1827
NlaIV	GGNNCC	5 cut(s)	58, 117, 997, 1287, 1829
NmuCI	GTSAC	2 cut(s)	348, 1708
NspI	RCATGY	1 cut(s)	656
NspV	TTCGAA	1 cut(s)	380
OliI	CACNNNNGTG	1 cut(s)	958
PaeR7I	CTCGAG	1 cut(s)	795
PagI	TCATGA	1 cut(s)	1566
PasI	CCCWGGG	1 cut(s)	991
PciI	ACATGT	1 cut(s)	652
PciSI	GCTCTTC	1 cut(s)	1905
PcsI	WCGNNNNNNNCGW	1 cut(s)	457
PctI	GAATGC	1 cut(s)	12
PfeI	GAWTC	6 cut(s)	559, 724, 1516, 1688, 1742, 1907
PfoI	TCCNGGA	2 cut(s)	1012, 1134
PinAI	ACCGGT	1 cut(s)	1085
PkrI	GCNGC	9 cut(s)	135, 174, 197, 1048, 1345, 1436, 1531, 1894, 1897
PleI	GAGTC	3 cut(s)	340, 1681, 1705
PpsI	GAGTC	3 cut(s)	340, 1681, 1705
Ppu21I	YACGTR	2 cut(s)	1124, 1292
PscI	ACATGT	1 cut(s)	652
PshAI	GACNNNNGTC	1 cut(s)	163
Psp124BI	GAGCTC	1 cut(s)	1543
Psp6I	CCWGG	6 cut(s)	884, 990, 1012, 1072, 1134, 1279
PspGI	CCWGG	6 cut(s)	884, 990, 1012, 1072, 1134, 1279
PspN4I	GGNNCC	5 cut(s)	58, 117, 997, 1287, 1829
PspPI	GGNCC	4 cut(s)	116, 1277, 1302, 1828
PspXI	VCTCGAGB	1 cut(s)	795
PsrI	GAACNNNNNNTAC	2 cut(s)	648, 680
PvuII	CAGCTG	1 cut(s)	1885
RsaI	GTAC	6 cut(s)	685, 816, 1126, 1144, 1403, 1636
RsaNI	GTAC	6 cut(s)	684, 815, 1125, 1143, 1402, 1635
RseI	CAYNNNNRTG	2 cut(s)	459, 958
SacI	GAGCTC	1 cut(s)	1543
SapI	GCTCTTC	1 cut(s)	1905
SaqAI	TTAA	5 cut(s)	63, 396, 830, 935, 978
SatI	GCNGC	9 cut(s)	134, 173, 196, 1047, 1344, 1435, 1530, 1893, 1896
Sau3AI	GATC	2 cut(s)	892, 1569
Sau96I	GGNCC	4 cut(s)	116, 1277, 1302, 1828
ScaI	AGTACT	1 cut(s)	1403
SchI	GAGTC	3 cut(s)	341, 1682, 1705
ScrFI	CCNGG	8 cut(s)	113, 114, 886, 992, 1014, 1074, 1136, 1281
SduI	GDGCHC	3 cut(s)	955, 1543, 1776
SfaNI	GCATC	3 cut(s)	861, 1073, 1313
SfcI	CTRYAG	1 cut(s)	1329
Sfr274I	CTCGAG	1 cut(s)	795
SfuI	TTCGAA	1 cut(s)	380
SinI	GGWCC	2 cut(s)	1277, 1828
SlaI	CTCGAG	1 cut(s)	795
SmaI	CCCGGG	1 cut(s)	114
SmiMI	CAYNNNNRTG	2 cut(s)	459, 958
SmlI	CTYRAG	2 cut(s)	62, 795
SmoI	CTYRAG	2 cut(s)	62, 795
SnaBI	TACGTA	1 cut(s)	1124
SpeI	ACTAGT	1 cut(s)	1705
SsiI	CCGC	7 cut(s)	134, 173, 193, 196, 217, 346, 1435
SspI	AATATT	1 cut(s)	834
SspMI	CTAG	3 cut(s)	336, 1196, 1706
SstI	GAGCTC	1 cut(s)	1543
StyD4I	CCNGG	8 cut(s)	111, 112, 884, 990, 1012, 1072, 1134, 1279
StyI	CCWWGG	2 cut(s)	1195, 1817
TaaI	ACNGT	4 cut(s)	637, 1129, 1309, 1478
TaiI	ACGT	4 cut(s)	76, 491, 1126, 1294
TaqI	TCGA	5 cut(s)	340, 380, 796, 1032, 1471
TaqII	GACCGA	1 cut(s)	1265
TatI	WGTACW	3 cut(s)	814, 1142, 1401
TauI	GCSGC	4 cut(s)	136, 175, 198, 1437
TfiI	GAWTC	6 cut(s)	559, 724, 1516, 1688, 1742, 1907
Tru1I	TTAA	5 cut(s)	63, 396, 830, 935, 978
Tru9I	TTAA	5 cut(s)	63, 396, 830, 935, 978
TscAI	CASTG	7 cut(s)	693, 955, 960, 1048, 1056, 1435, 1483
TseFI	GTSAC	2 cut(s)	348, 1708
TseI	GCWGC	5 cut(s)	1046, 1343, 1529, 1892, 1895
Tsp45I	GTSAC	2 cut(s)	348, 1708
TspDTI	ATGAA	7 cut(s)	656, 713, 741, 1112, 1130, 1734, 1794
TspGWI	ACGGA	1 cut(s)	1562
TspMI	CCCGGG	1 cut(s)	112
TspRI	CASTG	7 cut(s)	693, 955, 960, 1048, 1056, 1435, 1483
Vha464I	CTTAAG	1 cut(s)	62
VneI	GTGCAC	1 cut(s)	951
VpaK11BI	GGWCC	2 cut(s)	1277, 1828
XapI	RAATTY	3 cut(s)	122, 382, 1028
XceI	RCATGY	1 cut(s)	656
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1296
XhoI	CTCGAG	1 cut(s)	795
XmaI	CCCGGG	1 cut(s)	112
XmaJI	CCTAGG	1 cut(s)	1195
XmiI	GTMKAC	1 cut(s)	603
XspI	CTAG	3 cut(s)	336, 1196, 1706
ZrmI	AGTACT	1 cut(s)	1403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.