Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0010258

Physical Location & Seq

Genomic Coordinates Forward (+)

93200281 .. 93211765

Gene Structure 11485 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00072010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2211 bp

ATGTTCTCCTCCCTATGTTCTTTGGATGAGAAATGGATGGCTGAGCTTGCACATTCATTGTCATCAGGTTTTTCGGATGATAAAACTCCTCTCGGTCCTGGGGAGCCATGTATAATATGGCCCACAGTAGAAGATGTCAGATGCTCTATAGAGGGTTATGCTGCTGGAAATGCTGTCCCAAGTCCAGTAAAGAATGTGGAGAAAGATTTCTTGAAGAAGTACTGGGCAAGTGTACTGAGTACTGACACTGAATTCATTTTCATGAATTTTCTGAAAAAGCATCTTGCTTTAGAGATCACAACCGTGAATAGCTTGTCTAAAATCACTTGGTCTTGGGGATTGCGACAAGTTGGCTTGTCGTGTATTACAAATTCAAAGAAAAAAAAAAAAAAAAAAAACCTCACTGCCTCAGCATGTTACAGTGCTGGACAGACGTTGTGTGTGGAGGGAAGCAATCCGGTTGTGGTAACTAGCGGAAATGATAGGAAGAAACTGTATCATAAAGAAAGTATGATGATTCGAGACGGTGATATTATAGAGCTGATTCCAGGGCAGTATATTTTTCAGTATAGGAAATTGTGTGGTGATAGTTATGAGAAGTGTTCAAATGGTGAAGAGAACGCTGAGGAGTCTAGTCGAAAGCGGTCACATCAGTTAGAATGTGGGGAGAATGGTTCGAATTTGAAGCGTTTTAAGGGTGAGGTGGAAGGGAAGAGTGATGATGGTGGTGGTCCTGCGGAGGCGATAAGGCATTTTCGTGTTCCTAATGAAAAGTTGCCACATACGTTTCGGCTTTTGAATGTGCAAGGACTGCCCCCGTGGGCGAATACCTCGTGTGTTTCTATACAGGATGTGATTCAGGGTGACATCCTTGTTGCTGTCATTTCCAATTACATGGTAGACCTTGATTGGCTGATACCTGCTTGTCCAACAGTTGCAAAAATCCCACATGTATTGGTTGTTCATGGTGAGGGTGATGGTACATTGGATTATATGAAGAGAAAGAAACCTGCAAATTGGATTCTACACAAACCACCATTGCCTATTTCATTTGGGACACACCACTCAAAGGCCATGCTTCTTGTTTATCCTCGAGGAATGAGAATAATAGTACATACAGCAAACTTAATATTTGTTGATTGGAACAACAAAAGTCAAGGTTTGTGGATGCAAGATTTTCCCTGGAAAGATCAAAGTAATCCAAGCAAAGGTTGTGGATTTGAAAATGACTTAATTGACTATCTCAGTGCACTGAAGTGGCCCGAGTTTTCTGTTAATTTGCCTACCCTGGGAACCTTCAATATAAATCCAGGATTTTTCAAGAAATTCAATTACAGCAGTGCAGCAGTGAGGCTAATTGCATCTGTCCCTGGATATCATACTGGTAATAACATGAAAAAGTGGGGACATATGAAACTACGTACTGTTCTCCAGGAGTGTACTTTTGATAAAGAGTTTCGGAAATCTCCTCTTGCTTATCAGTTCTCCTCCCTAGGTTCTTTGGATGAGAAATGGATGGCTGAGCTTGCACATTCAATGTCATCAGGTTTTTCGGATGATAAAACTCCTCTCGGTCCTGGGGAGCCACGTATAATATGGCCCACAGTAGAAGATGTCAGATGCTCTATAGAGGGTTATGCTGCTGGAAATGCTGTTCCAAGTCCAGCAAAGAATGTGGAGAAAGATTTCTTGAAGAAGTACTGGGCAAGATGGAAGGCAAGCCACACTGGCCGCTGTCGTGCAATGCCACATATAAAGACATTTACTCGATACAGCGGTCAGAAACTTGCTTGGTTTTTGCTAACATCAGCGAATCTTAGCAAAGCTGCATGGGGAGCTCTCCAGAAGAATAATTCTCAATTCATGATCCGTTCTTATGAGCTTGGGGTGCTGTTTCTACCATATAAAACACGAAGTTCTGGATTTTCTTGTACCAGTAATGGGGTTCCATCTGAGGATAAATCTGAAGAGTCAGATAATTCGGAATCAAGGAGAAATAAACTAGTGACTCTGAACTGGCAAGGGAACAGGAACACAGATTCATCATCTGAAGTAATCACATTGCCTGTGCCCTATGAACTCCCTCCTCAACCATACACCACCCAAGATGTTCCTTGGTCATGGGACCGGCGATACACCAAGAAAGATGTTTATGGTCAAGTTTGGCCGCGGCAAGTTCAGCTGTATGCAGCAGCTCTTCAAGATTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000012 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008081 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016787 GO:0016788 GO:0017005 GO:0033554 GO:0034641 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0070259 GO:0071704 GO:0071944 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA Tyr-DNA_phospho

Protein Analysis

736

Amino Acids

82.83

Weight (kDa)

8.89

Isoelectric Point (pI)

42.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tyr-DNA_phospho	PF06087	263 - 700	1e-101	Tyrosyl-DNA phosphodiesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010258)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15170
fragaria_vesca	FvH4_3g02650 FvH4_3g02650
malus_domestica	MD10G1314700.v1.1
prunus_persica	Prupe.4G026100_v2.0.a1 Prupe.4G026100_v2.0.a1
pyrus_communis	pycom10g26680
rosa_chinensis	RchiOBHm_Chr5g0003961
rosa_laevigata	RLG00000031190 RLG00000031192
rosa_multiflora	Rmu_sc0000547.1_g000008
rosa_roxburghii	Rroxscaffold_1G00072010
rosa_rugosa	Rorug04G0408200.1 Rorug04G0408300.1 Rorug04G0408400 Rorug04G0408500
rosa_samantha	Rh5AG036200 Rh5BG035100 Rh5CG038800 Rh5DG034700
rosa_wichuraiana	Rw5G003300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	1092
Acc36I	ACCTGC	2 cut(s)	928, 1018
AccI	GTMKAC	1 cut(s)	900
AccII	CGCG	1 cut(s)	2170
AciI	CCGC	7 cut(s)	474, 643, 737, 1732, 1776, 2168, 2170
AclWI	GGATC	1 cut(s)	1861
AcoI	YGGCCR	2 cut(s)	1729, 2165
AcsI	RAATTY	5 cut(s)	251, 265, 370, 679, 1325
AcuI	CTGAAG	3 cut(s)	1274, 1986, 2070
AfaI	GTAC	9 cut(s)	221, 234, 241, 982, 1113, 1423, 1441, 1700, 1933
AfiI	CCNNNNNNNGG	4 cut(s)	1069, 1208, 1289, 1941
AflIII	ACRYGT	1 cut(s)	949
AhlI	ACTAGT	1 cut(s)	2002
AjnI	CCWGG	8 cut(s)	97, 547, 1181, 1287, 1309, 1369, 1431, 1576
AleI	CACNNNNGTG	2 cut(s)	302, 1255
AloI	GAACNNNNNNTCC	2 cut(s)	1638, 1670
AluBI	AGCT	9 cut(s)	46, 312, 541, 1525, 1826, 1838, 1882, 2182, 2195
AluI	AGCT	9 cut(s)	46, 312, 541, 1525, 1826, 1838, 1882, 2182, 2195
Alw21I	GWGCWC	2 cut(s)	1252, 1840
Alw26I	GTCTC	1 cut(s)	516
Alw44I	GTGCAC	1 cut(s)	1248
AlwI	GGATC	1 cut(s)	1861
Ama87I	CYCGRG	2 cut(s)	1092, 1262
AoxI	GGCC	6 cut(s)	119, 1071, 1259, 1598, 1729, 2165
ApaLI	GTGCAC	1 cut(s)	1248
ApeKI	GCWGC	6 cut(s)	161, 1343, 1640, 1826, 2189, 2192
ApoI	RAATTY	5 cut(s)	251, 265, 370, 679, 1325
Asp700I	GAANNNNTTC	2 cut(s)	206, 1685
AspA2I	CCTAGG	1 cut(s)	1492
AspS9I	GGNCC	7 cut(s)	95, 120, 731, 1260, 1574, 1599, 2125
AsuHPI	GGTGA	7 cut(s)	539, 596, 623, 710, 875, 980, 986
AsuII	TTCGAA	1 cut(s)	677
AvaI	CYCGRG	2 cut(s)	1092, 1262
AvaII	GGWCC	4 cut(s)	95, 731, 1574, 2125
AvrII	CCTAGG	1 cut(s)	1492
BaeGI	GKGCMC	2 cut(s)	1252, 2073
BaeI	ACNNNNGTAYC	2 cut(s)	1762, 1795
BanII	GRGCYC	1 cut(s)	1840
BauI	CACGAG	1 cut(s)	832
Bbv12I	GWGCWC	2 cut(s)	1252, 1840
BbvCI	CCTCAGC	2 cut(s)	409, 624
BbvI	GCAGC	6 cut(s)	148, 1355, 1627, 1813, 2201, 2204
BccI	CCATC	6 cut(s)	31, 716, 971, 1510, 1704, 1957
BciT130I	CCWGG	8 cut(s)	99, 549, 1183, 1289, 1311, 1371, 1433, 1578
BcoDI	GTCTC	1 cut(s)	516
BcuI	ACTAGT	1 cut(s)	2002
BfaI	CTAG	4 cut(s)	471, 633, 1493, 2003
BfmI	CTRYAG	2 cut(s)	147, 1626
BfuAI	ACCTGC	2 cut(s)	928, 1018
BglI	GCCNNNNNGGC	1 cut(s)	1728
BisI	GCNGC	9 cut(s)	162, 1344, 1641, 1732, 1827, 2168, 2171, 2190, 2193
BlnI	CCTAGG	1 cut(s)	1492
BlpI	GCTNAGC	2 cut(s)	42, 1521
BlsI	GCNGC	9 cut(s)	163, 1345, 1642, 1733, 1828, 2169, 2172, 2191, 2194
BmcAI	AGTACT	3 cut(s)	221, 241, 1700
Bme1390I	CCNGG	8 cut(s)	99, 549, 1183, 1289, 1311, 1371, 1433, 1578
Bme18I	GGWCC	4 cut(s)	95, 731, 1574, 2125
BmeT110I	CYCGRG	2 cut(s)	1092, 1262
BmgT120I	GGNCC	7 cut(s)	95, 120, 731, 1260, 1574, 1599, 2125
BmiI	GGNNCC	5 cut(s)	105, 1294, 1584, 1947, 2126
BmrFI	CCNGG	8 cut(s)	99, 549, 1183, 1289, 1311, 1371, 1433, 1578
BmrI	ACTGGG	2 cut(s)	232, 1711
BmsI	GCATC	5 cut(s)	131, 289, 1158, 1370, 1610
BmuI	ACTGGG	2 cut(s)	232, 1711
BpmI	CTGGAG	2 cut(s)	1415, 1826
Bpu10I	CCTNAGC	2 cut(s)	409, 624
Bpu1102I	GCTNAGC	2 cut(s)	42, 1521
Bpu14I	TTCGAA	1 cut(s)	677
BsaAI	YACGTR	2 cut(s)	1421, 1589
BsaWI	WCCGGW	1 cut(s)	457
Bsc4I	CCNNNNNNNGG	4 cut(s)	1069, 1208, 1289, 1941
Bse118I	RCCGGY	1 cut(s)	2127
Bse1I	ACTGG	7 cut(s)	185, 227, 1387, 1706, 1732, 1935, 2021
Bse3DI	GCAATG	3 cut(s)	1037, 1749, 2060
BseBI	CCWGG	8 cut(s)	99, 549, 1183, 1289, 1311, 1371, 1433, 1578
BseGI	GGATG	9 cut(s)	31, 42, 82, 856, 867, 1173, 1510, 1521, 1561
BseLI	CCNNNNNNNGG	4 cut(s)	1069, 1208, 1289, 1941
BseMI	GCAATG	3 cut(s)	1037, 1749, 2060
BseMII	CTCAG	7 cut(s)	33, 227, 423, 615, 1258, 1512, 1944
BseNI	ACTGG	7 cut(s)	185, 227, 1387, 1706, 1732, 1935, 2021
BseRI	GAGGAG	6 cut(s)	78, 641, 1458, 1477, 1557, 2076
BseSI	GKGCMC	2 cut(s)	1252, 2073
BseXI	GCAGC	6 cut(s)	148, 1355, 1627, 1813, 2201, 2204
BsgI	GTGCAG	1 cut(s)	1362
Bsh1236I	CGCG	1 cut(s)	2170
BshFI	GGCC	6 cut(s)	121, 1073, 1261, 1600, 1731, 2167
BsiHKAI	GWGCWC	2 cut(s)	1252, 1840
BsiHKCI	CYCGRG	2 cut(s)	1092, 1262
BsiSI	CCGG	2 cut(s)	458, 2128
BslFI	GGGAC	5 cut(s)	161, 1069, 1352, 1419, 2138
BslI	CCNNNNNNNGG	4 cut(s)	1069, 1208, 1289, 1941
BsmAI	GTCTC	1 cut(s)	516
BsmBI	CGTCTC	1 cut(s)	516
BsmFI	GGGAC	5 cut(s)	161, 1069, 1352, 1419, 2138
BsnI	GGCC	6 cut(s)	121, 1073, 1261, 1600, 1731, 2167
BsoBI	CYCGRG	2 cut(s)	1092, 1262
Bsp119I	TTCGAA	1 cut(s)	677
Bsp1286I	GDGCHC	3 cut(s)	1252, 1840, 2073
Bsp143I	GATC	3 cut(s)	294, 1189, 1866
Bsp1720I	GCTNAGC	2 cut(s)	42, 1521
BspACI	CCGC	7 cut(s)	474, 643, 737, 1732, 1776, 2168, 2170
BspANI	GGCC	6 cut(s)	121, 1073, 1261, 1600, 1731, 2167
BspCNI	CTCAG	7 cut(s)	34, 228, 422, 616, 1257, 1513, 1945
BspFNI	CGCG	1 cut(s)	2170
BspHI	TCATGA	2 cut(s)	261, 1863
BspLI	GGNNCC	5 cut(s)	105, 1294, 1584, 1947, 2126
BspMI	ACCTGC	2 cut(s)	928, 1018
BspPI	GGATC	1 cut(s)	1861
BspQI	GCTCTTC	1 cut(s)	2202
BspT104I	TTCGAA	1 cut(s)	677
BsrDI	GCAATG	3 cut(s)	1037, 1749, 2060
BsrFI	RCCGGY	1 cut(s)	2127
BsrI	ACTGG	7 cut(s)	185, 227, 1387, 1706, 1732, 1935, 2021
BssAI	RCCGGY	1 cut(s)	2127
BssMI	GATC	3 cut(s)	294, 1189, 1866
BssSI	CACGAG	1 cut(s)	832
BssT1I	CCWWGG	2 cut(s)	1492, 2114
Bst2BI	CACGAG	1 cut(s)	832
Bst2UI	CCWGG	8 cut(s)	99, 549, 1183, 1289, 1311, 1371, 1433, 1578
Bst4CI	ACNGT	8 cut(s)	127, 304, 422, 495, 527, 934, 1426, 1606
Bst6I	CTCTTC	5 cut(s)	609, 707, 992, 1962, 2202
BstAPI	GCANNNNNTGC	1 cut(s)	811
BstBAI	YACGTR	2 cut(s)	1421, 1589
BstBI	TTCGAA	1 cut(s)	677
BstC8I	GCNNGC	3 cut(s)	48, 1527, 1720
BstDEI	CTNAG	8 cut(s)	42, 236, 409, 624, 1244, 1521, 1817, 1953
BstDSI	CCRYGG	2 cut(s)	818, 2168
BstF5I	GGATG	9 cut(s)	31, 42, 82, 856, 867, 1173, 1510, 1521, 1561
BstFNI	CGCG	1 cut(s)	2170
BstKTI	GATC	3 cut(s)	297, 1192, 1869
BstMAI	GTCTC	1 cut(s)	516
BstMBI	GATC	3 cut(s)	294, 1189, 1866
BstMWI	GCNNNNNNNGC	9 cut(s)	47, 170, 811, 1526, 1649, 1728, 1835, 1888, 2179
BstNI	CCWGG	8 cut(s)	99, 549, 1183, 1289, 1311, 1371, 1433, 1578
BstNSI	RCATGY	2 cut(s)	417, 953
BstSCI	CCNGG	8 cut(s)	97, 547, 1181, 1287, 1309, 1369, 1431, 1576
BstSFI	CTRYAG	2 cut(s)	147, 1626
BstSLI	GKGCMC	2 cut(s)	1252, 2073
BstSNI	TACGTA	1 cut(s)	1421
BstUI	CGCG	1 cut(s)	2170
BstV1I	GCAGC	6 cut(s)	148, 1355, 1627, 1813, 2201, 2204
BstXI	CCANNNNNNTGG	1 cut(s)	895
BsuRI	GGCC	6 cut(s)	121, 1073, 1261, 1600, 1731, 2167
BtgI	CCRYGG	2 cut(s)	818, 2168
BtsCI	GGATG	9 cut(s)	31, 42, 82, 856, 867, 1173, 1510, 1521, 1561
BtsI	GCAGTG	3 cut(s)	402, 1345, 1353
BtsIMutI	CAGTG	8 cut(s)	246, 402, 427, 1250, 1252, 1345, 1353, 1725
BveI	ACCTGC	2 cut(s)	928, 1018
Cac8I	GCNNGC	3 cut(s)	48, 1527, 1720
CciI	TCATGA	2 cut(s)	261, 1863
Cfr10I	RCCGGY	1 cut(s)	2127
Cfr13I	GGNCC	7 cut(s)	95, 120, 731, 1260, 1574, 1599, 2125
Cfr42I	CCGCGG	1 cut(s)	2171
Csp6I	GTAC	9 cut(s)	220, 233, 240, 981, 1112, 1422, 1440, 1699, 1932
CspCI	CAANNNNNGTGG	8 cut(s)	936, 971, 1145, 1180, 1195, 1230, 1656, 1691
CviQI	GTAC	9 cut(s)	220, 233, 240, 981, 1112, 1422, 1440, 1699, 1932
DdeI	CTNAG	8 cut(s)	42, 236, 409, 624, 1244, 1521, 1817, 1953
DpnI	GATC	3 cut(s)	296, 1191, 1868
DpnII	GATC	3 cut(s)	294, 1189, 1866
EaeI	YGGCCR	2 cut(s)	1729, 2165
Eam1104I	CTCTTC	5 cut(s)	609, 707, 992, 1962, 2202
EarI	CTCTTC	5 cut(s)	609, 707, 992, 1962, 2202
Ecl136II	GAGCTC	1 cut(s)	1838
Eco105I	TACGTA	1 cut(s)	1421
Eco130I	CCWWGG	2 cut(s)	1492, 2114
Eco24I	GRGCYC	1 cut(s)	1840
Eco32I	GATATC	1 cut(s)	1376
Eco47I	GGWCC	4 cut(s)	95, 731, 1574, 2125
Eco53kI	GAGCTC	1 cut(s)	1838
Eco57I	CTGAAG	3 cut(s)	1274, 1986, 2070
Eco88I	CYCGRG	2 cut(s)	1092, 1262
EcoICRI	GAGCTC	1 cut(s)	1838
EcoRI	GAATTC	1 cut(s)	251
EcoRII	CCWGG	8 cut(s)	97, 547, 1181, 1287, 1309, 1369, 1431, 1576
EcoRV	GATATC	1 cut(s)	1376
EcoT14I	CCWWGG	2 cut(s)	1492, 2114
EcoT38I	GRGCYC	1 cut(s)	1840
ErhI	CCWWGG	2 cut(s)	1492, 2114
Esp3I	CGTCTC	1 cut(s)	516
FaqI	GGGAC	5 cut(s)	161, 1069, 1352, 1419, 2138
FauNDI	CATATG	1 cut(s)	1410
FblI	GTMKAC	1 cut(s)	900
Fnu4HI	GCNGC	9 cut(s)	162, 1344, 1641, 1732, 1827, 2168, 2171, 2190, 2193
FokI	GGATG	9 cut(s)	38, 49, 89, 854, 863, 1180, 1517, 1528, 1568
FriOI	GRGCYC	1 cut(s)	1840
Fsp4HI	GCNGC	9 cut(s)	162, 1344, 1641, 1732, 1827, 2168, 2171, 2190, 2193
FspBI	CTAG	4 cut(s)	471, 633, 1493, 2003
GluI	GCNGC	9 cut(s)	162, 1344, 1641, 1732, 1827, 2168, 2171, 2190, 2193
GsuI	CTGGAG	2 cut(s)	1415, 1826
HaeIII	GGCC	6 cut(s)	121, 1073, 1261, 1600, 1731, 2167
HapII	CCGG	2 cut(s)	458, 2128
HpaII	CCGG	2 cut(s)	458, 2128
HphI	GGTGA	7 cut(s)	539, 596, 623, 710, 875, 980, 986
Hpy166II	GTNNAC	4 cut(s)	233, 901, 1250, 1440
Hpy8I	GTNNAC	4 cut(s)	233, 901, 1250, 1440
HpyAV	CCTTC	3 cut(s)	701, 1306, 1708
HpyCH4III	ACNGT	8 cut(s)	127, 304, 422, 495, 527, 934, 1426, 1606
HpyCH4IV	ACGT	4 cut(s)	434, 785, 1420, 1588
HpyF10VI	GCNNNNNNNGC	9 cut(s)	47, 170, 811, 1526, 1649, 1728, 1835, 1888, 2179
HpyF3I	CTNAG	8 cut(s)	42, 236, 409, 624, 1244, 1521, 1817, 1953
HpySE526I	ACGT	4 cut(s)	434, 785, 1420, 1588
KspI	CCGCGG	1 cut(s)	2171
Kzo9I	GATC	3 cut(s)	294, 1189, 1866
LguI	GCTCTTC	1 cut(s)	2202
LmnI	GCTCC	3 cut(s)	103, 1582, 1835
Lsp1109I	GCAGC	6 cut(s)	148, 1355, 1627, 1813, 2201, 2204
LweI	GCATC	5 cut(s)	131, 289, 1158, 1370, 1610
MaeI	CTAG	4 cut(s)	471, 633, 1493, 2003
MaeII	ACGT	4 cut(s)	434, 785, 1420, 1588
MaeIII	GTNAC	5 cut(s)	416, 466, 645, 863, 2005
MalI	GATC	3 cut(s)	296, 1191, 1868
MboI	GATC	3 cut(s)	294, 1189, 1866
MhlI	GDGCHC	3 cut(s)	1252, 1840, 2073
MlyI	GAGTC	3 cut(s)	638, 1979, 2002
MmeI	TCCRAC	1 cut(s)	953
MroXI	GAANNNNTTC	2 cut(s)	206, 1685
MseI	TTAA	4 cut(s)	693, 1127, 1232, 1275
MslI	CAYNNNNRTG	4 cut(s)	260, 302, 756, 1255
MspA1I	CMGCKG	4 cut(s)	1734, 1776, 2170, 2182
MspI	CCGG	2 cut(s)	458, 2128
MspR9I	CCNGG	8 cut(s)	99, 549, 1183, 1289, 1311, 1371, 1433, 1578
MvaI	CCWGG	8 cut(s)	99, 549, 1183, 1289, 1311, 1371, 1433, 1578
MvnI	CGCG	1 cut(s)	2170
MwoI	GCNNNNNNNGC	9 cut(s)	47, 170, 811, 1526, 1649, 1728, 1835, 1888, 2179
NdeI	CATATG	1 cut(s)	1410
NdeII	GATC	3 cut(s)	294, 1189, 1866
NlaIV	GGNNCC	5 cut(s)	105, 1294, 1584, 1947, 2126
NmuCI	GTSAC	3 cut(s)	645, 863, 2005
NspI	RCATGY	2 cut(s)	417, 953
NspV	TTCGAA	1 cut(s)	677
OliI	CACNNNNGTG	2 cut(s)	302, 1255
PaeR7I	CTCGAG	1 cut(s)	1092
PagI	TCATGA	2 cut(s)	261, 1863
PasI	CCCWGGG	1 cut(s)	1288
PciI	ACATGT	1 cut(s)	949
PciSI	GCTCTTC	1 cut(s)	2202
PdmI	GAANNNNTTC	2 cut(s)	206, 1685
PfeI	GAWTC	8 cut(s)	517, 544, 856, 1021, 1813, 1985, 2039, 2204
PfoI	TCCNGGA	2 cut(s)	1309, 1431
PkrI	GCNGC	9 cut(s)	163, 1345, 1642, 1733, 1828, 2169, 2172, 2191, 2194
PleI	GAGTC	3 cut(s)	637, 1978, 2002
PpsI	GAGTC	3 cut(s)	637, 1978, 2002
Ppu21I	YACGTR	2 cut(s)	1421, 1589
PscI	ACATGT	1 cut(s)	949
Psp124BI	GAGCTC	1 cut(s)	1840
Psp6I	CCWGG	8 cut(s)	97, 547, 1181, 1287, 1309, 1369, 1431, 1576
PspGI	CCWGG	8 cut(s)	97, 547, 1181, 1287, 1309, 1369, 1431, 1576
PspN4I	GGNNCC	5 cut(s)	105, 1294, 1584, 1947, 2126
PspPI	GGNCC	7 cut(s)	95, 120, 731, 1260, 1574, 1599, 2125
PspXI	VCTCGAGB	1 cut(s)	1092
PsrI	GAACNNNNNNTAC	2 cut(s)	945, 977
PvuII	CAGCTG	1 cut(s)	2182
RsaI	GTAC	9 cut(s)	221, 234, 241, 982, 1113, 1423, 1441, 1700, 1933
RsaNI	GTAC	9 cut(s)	220, 233, 240, 981, 1112, 1422, 1440, 1699, 1932
RseI	CAYNNNNRTG	4 cut(s)	260, 302, 756, 1255
SacI	GAGCTC	1 cut(s)	1840
SacII	CCGCGG	1 cut(s)	2171
SapI	GCTCTTC	1 cut(s)	2202
SaqAI	TTAA	4 cut(s)	693, 1127, 1232, 1275
SatI	GCNGC	9 cut(s)	162, 1344, 1641, 1732, 1827, 2168, 2171, 2190, 2193
Sau3AI	GATC	3 cut(s)	294, 1189, 1866
Sau96I	GGNCC	7 cut(s)	95, 120, 731, 1260, 1574, 1599, 2125
ScaI	AGTACT	3 cut(s)	221, 241, 1700
SchI	GAGTC	3 cut(s)	638, 1979, 2002
ScrFI	CCNGG	8 cut(s)	99, 549, 1183, 1289, 1311, 1371, 1433, 1578
SduI	GDGCHC	3 cut(s)	1252, 1840, 2073
SfaNI	GCATC	5 cut(s)	131, 289, 1158, 1370, 1610
SfcI	CTRYAG	2 cut(s)	147, 1626
Sfr274I	CTCGAG	1 cut(s)	1092
Sfr303I	CCGCGG	1 cut(s)	2171
SfuI	TTCGAA	1 cut(s)	677
SgrBI	CCGCGG	1 cut(s)	2171
SinI	GGWCC	4 cut(s)	95, 731, 1574, 2125
SlaI	CTCGAG	1 cut(s)	1092
SmiMI	CAYNNNNRTG	4 cut(s)	260, 302, 756, 1255
SmlI	CTYRAG	1 cut(s)	1092
SmoI	CTYRAG	1 cut(s)	1092
SnaBI	TACGTA	1 cut(s)	1421
SpeI	ACTAGT	1 cut(s)	2002
SsiI	CCGC	7 cut(s)	474, 643, 737, 1732, 1776, 2168, 2170
SspI	AATATT	1 cut(s)	1131
SspMI	CTAG	4 cut(s)	471, 633, 1493, 2003
SstI	GAGCTC	1 cut(s)	1840
StyD4I	CCNGG	8 cut(s)	97, 547, 1181, 1287, 1309, 1369, 1431, 1576
StyI	CCWWGG	2 cut(s)	1492, 2114
TaaI	ACNGT	8 cut(s)	127, 304, 422, 495, 527, 934, 1426, 1606
TaiI	ACGT	4 cut(s)	437, 788, 1423, 1591
TaqI	TCGA	5 cut(s)	520, 637, 677, 1093, 1768
TaqII	GACCGA	2 cut(s)	83, 1562
TatI	WGTACW	6 cut(s)	219, 232, 239, 1111, 1439, 1698
TauI	GCSGC	3 cut(s)	1734, 2170, 2173
TfiI	GAWTC	8 cut(s)	517, 544, 856, 1021, 1813, 1985, 2039, 2204
Tru1I	TTAA	4 cut(s)	693, 1127, 1232, 1275
Tru9I	TTAA	4 cut(s)	693, 1127, 1232, 1275
TscAI	CASTG	8 cut(s)	253, 409, 427, 1252, 1257, 1345, 1353, 1732
TseFI	GTSAC	3 cut(s)	645, 863, 2005
TseI	GCWGC	6 cut(s)	161, 1343, 1640, 1826, 2189, 2192
Tsp45I	GTSAC	3 cut(s)	645, 863, 2005
TspGWI	ACGGA	1 cut(s)	1859
TspRI	CASTG	8 cut(s)	253, 409, 427, 1252, 1257, 1345, 1353, 1732
VneI	GTGCAC	1 cut(s)	1248
VpaK11BI	GGWCC	4 cut(s)	95, 731, 1574, 2125
XapI	RAATTY	5 cut(s)	251, 265, 370, 679, 1325
XceI	RCATGY	2 cut(s)	417, 953
XcmI	CCANNNNNNNNNTGG	2 cut(s)	114, 1593
XhoI	CTCGAG	1 cut(s)	1092
XmaJI	CCTAGG	1 cut(s)	1492
XmiI	GTMKAC	1 cut(s)	900
XmnI	GAANNNNTTC	2 cut(s)	206, 1685
XspI	CTAG	4 cut(s)	471, 633, 1493, 2003
ZrmI	AGTACT	3 cut(s)	221, 241, 1700

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.