Prupe.4G059000_v2.0.a1

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Forward (+)
2817021 .. 2819046
2026 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G059000.1

Sequence Viewer

Length: 1089 bp
ATGAAGCTGTTTATTCTTGTAGCCTCTCTATGCCTGACTTTGAGCACAGTCTCCTCAAGTCTTCAACCATACGAGGCAATTTTCAACTTCGGTGACTCCCTTAGTGACACCGGAAATTTCCTCCTCTCTGGTGCTCTTGCATTCCCAGTCATCGGAAAGCTCCCTTATGGAGAGACCTTTTTTCGACGTGCAACCGGCCGGTGCTCCGATGGACGACTTGTCGTTGATTTCATTGCTGAGGCACTTGGGTTGCCACATTTGCCACCCTACCTGGCACTAAGCAAAGGCCAAGATGTGAAGCATGGAGTGAACTTTGCTGTTGCTGGAGCCACTGCGCTTGACCCACAATTCTTCTACCAAAGAAAAATCGGATCCGTTATGTGGACAAACGATTCCTTGAGCACTCAGCTTGGTTGGTTCAAGAAGCTTAAGCCCTCACTTTGCACCACCAAACAAGAGTGTGACAACTACTTCAAAAAGGCTCTGTTTCTGGTGGGGGAGATAGGTGGAAACGATTACAACTATGCCTTCTTTGTTGGTGGAAACATTAAACAGCTCAAAGCTTCTGTCCCATTTGTTGTTGAAGCAATTACTCAGGCCACCAGTGCATTGATAGAGGAAGGAGCAGTGGAGTTGGTGGTGCCCGGAAACTTGCCGATTGGGTGCTCAGCTGTGTATCTGACTCTGTTTCGAAGCCCCAACGAAGCTGTTTATGATAAACGAAATAGGTGTTTGAAGGCATTCAATGGTTTCTCCAAGTACCATAACAGTGAGCTCAAGCGTGCCCTGGGGGCACTTAGACTAAAATACCCTCATGCAAGGATTATATATGCTGACTACTATGGTGCAGCCATGCCTTTTTACCATGCCCCTCAGCATTATGGGTTCAAAAGTGGGACATTAAGGGCTTGTTGTGGAGGGGGAGGGCCATACAACTTCAATAATTCAGCAAGGTGTGGGCACATTGGATCAACAGCCTGTAAAGATCCATCTTCCTATGCAAACTGGGATGGAATTCACTTAACAGAAGCAGCTTATGGGCACATTGCCAAGGGCTTGATCCATGGCCGTTTTGCCACACCCCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

363

Amino Acids

39.46

Weight (kDa)

9.03

Isoelectric Point (pI)

42.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 640
AclWI GGATC 5 cut(s) 366, 379, 976, 980, 1054
AcoI YGGCCR 2 cut(s) 196, 1066
AcsI RAATTY 2 cut(s) 115, 1014
AfaI GTAC 1 cut(s) 761
AfiI CCNNNNNNNGG 2 cut(s) 152, 381
AflII CTTAAG 1 cut(s) 428
AgsI TTSAA 9 cut(s) 65, 85, 421, 475, 584, 736, 745, 889, 940
AhdI GACNNNNNGTC 1 cut(s) 218
AjiI CACGTC 1 cut(s) 188
AjnI CCWGG 2 cut(s) 270, 786
Alw21I GWGCWC 6 cut(s) 47, 136, 206, 404, 668, 777
Alw26I GTCTC 2 cut(s) 55, 167
AlwI GGATC 5 cut(s) 366, 379, 976, 980, 1054
AoxI GGCC 5 cut(s) 196, 286, 597, 926, 1066
ApeKI GCWGC 2 cut(s) 848, 1031
ApoI RAATTY 2 cut(s) 115, 1014
ArsI GACNNNNNNTTYG 2 cut(s) 552, 584
Asp700I GAANNNNTTC 1 cut(s) 740
AspLEI GCGC 1 cut(s) 337
AspS9I GGNCC 1 cut(s) 926
AsuC2I CCSGG 1 cut(s) 645
AsuHPI GGTGA 1 cut(s) 104
AsuII TTCGAA 1 cut(s) 691
BaeGI GKGCMC 5 cut(s) 645, 787, 796, 963, 1044
BamHI GGATCC 1 cut(s) 371
BanI GGYRCC 1 cut(s) 640
BanII GRGCYC 1 cut(s) 777
BbsI GAAGAC 1 cut(s) 53
Bbv12I GWGCWC 6 cut(s) 47, 136, 206, 404, 668, 777
BbvCI CCTCAGC 2 cut(s) 237, 873
BbvI GCAGC 2 cut(s) 860, 1043
BccI CCATC 3 cut(s) 203, 997, 1004
BceAI ACGGC 1 cut(s) 1053
BciT130I CCWGG 2 cut(s) 272, 788
BcnI CCSGG 1 cut(s) 645
BcoDI GTCTC 2 cut(s) 55, 167
BfaI CTAG 1 cut(s) 1087
BfrI CTTAAG 1 cut(s) 428
BglI GCCNNNNNGGC 1 cut(s) 791
BisI GCNGC 2 cut(s) 849, 1032
BlpI GCTNAGC 1 cut(s) 667
BlsI GCNGC 2 cut(s) 850, 1033
Bme1390I CCNGG 3 cut(s) 272, 645, 788
BmeRI GACNNNNNGTC 1 cut(s) 218
BmgBI CACGTC 1 cut(s) 188
BmgT120I GGNCC 1 cut(s) 926
BmiI GGNNCC 3 cut(s) 328, 373, 642
BmrFI CCNGG 3 cut(s) 272, 645, 788
BmrI ACTGGG 2 cut(s) 140, 1015
BmuI ACTGGG 2 cut(s) 140, 1015
BpiI GAAGAC 1 cut(s) 53
BpmI CTGGAG 1 cut(s) 345
Bpu10I CCTNAGC 2 cut(s) 237, 873
Bpu1102I GCTNAGC 1 cut(s) 667
Bpu14I TTCGAA 1 cut(s) 691
BpuEI CTTGAG 3 cut(s) 40, 418, 761
BpuMI CCSGG 1 cut(s) 645
BsaI GGTCTC 1 cut(s) 167
BsaJI CCNNGG 4 cut(s) 786, 787, 1050, 1063
BsaWI WCCGGW 1 cut(s) 110
Bsc4I CCNNNNNNNGG 2 cut(s) 152, 381
Bse118I RCCGGY 2 cut(s) 194, 198
Bse1I ACTGG 3 cut(s) 146, 603, 1010
Bse3DI GCAATG 2 cut(s) 231, 1044
BseBI CCWGG 2 cut(s) 272, 788
BseDI CCNNGG 4 cut(s) 786, 787, 1050, 1063
BseGI GGATG 1 cut(s) 1015
BseLI CCNNNNNNNGG 2 cut(s) 152, 381
BseMI GCAATG 2 cut(s) 231, 1044
BseMII CTCAG 5 cut(s) 228, 419, 608, 681, 887
BseNI ACTGG 3 cut(s) 146, 603, 1010
BseRI GAGGAG 2 cut(s) 43, 113
BseSI GKGCMC 5 cut(s) 645, 787, 796, 963, 1044
BseX3I CGGCCG 1 cut(s) 196
BseXI GCAGC 2 cut(s) 860, 1043
BsgI GTGCAG 1 cut(s) 867
Bsh1285I CGRYCG 1 cut(s) 199
BshFI GGCC 5 cut(s) 198, 288, 599, 928, 1068
BshNI GGYRCC 1 cut(s) 640
BsiEI CGRYCG 1 cut(s) 199
BsiHKAI GWGCWC 6 cut(s) 47, 136, 206, 404, 668, 777
BsiSI CCGG 4 cut(s) 111, 195, 199, 645
BslFI GGGAC 2 cut(s) 554, 910
BslI CCNNNNNNNGG 2 cut(s) 152, 381
BsmAI GTCTC 2 cut(s) 55, 167
BsmFI GGGAC 2 cut(s) 554, 910
BsmI GAATGC 2 cut(s) 140, 740
BsnI GGCC 5 cut(s) 198, 288, 599, 928, 1068
Bso31I GGTCTC 1 cut(s) 167
Bsp119I TTCGAA 1 cut(s) 691
Bsp143I GATC 4 cut(s) 371, 968, 985, 1059
Bsp1720I GCTNAGC 1 cut(s) 667
Bsp19I CCATGG 1 cut(s) 1063
BspANI GGCC 5 cut(s) 198, 288, 599, 928, 1068
BspCNI CTCAG 5 cut(s) 229, 418, 607, 680, 886
BspLI GGNNCC 3 cut(s) 328, 373, 642
BspPI GGATC 5 cut(s) 366, 379, 976, 980, 1054
BspT104I TTCGAA 1 cut(s) 691
BspT107I GGYRCC 1 cut(s) 640
BspTI CTTAAG 1 cut(s) 428
BspTNI GGTCTC 1 cut(s) 167
BsrDI GCAATG 2 cut(s) 231, 1044
BsrFI RCCGGY 2 cut(s) 194, 198
BsrI ACTGG 3 cut(s) 146, 603, 1010
BssAI RCCGGY 2 cut(s) 194, 198
BssECI CCNNGG 4 cut(s) 786, 787, 1050, 1063
BssMI GATC 4 cut(s) 371, 968, 985, 1059
BssT1I CCWWGG 2 cut(s) 1050, 1063
Bst2UI CCWGG 2 cut(s) 272, 788
Bst4CI ACNGT 2 cut(s) 49, 770
BstAFI CTTAAG 1 cut(s) 428
BstBI TTCGAA 1 cut(s) 691
BstC8I GCNNGC 1 cut(s) 783
BstDEI CTNAG 8 cut(s) 101, 237, 278, 405, 594, 667, 797, 873
BstDSI CCRYGG 1 cut(s) 1063
BstF5I GGATG 1 cut(s) 1015
BstHHI GCGC 1 cut(s) 337
BstKTI GATC 4 cut(s) 374, 971, 988, 1062
BstMAI GTCTC 2 cut(s) 55, 167
BstMBI GATC 4 cut(s) 371, 968, 985, 1059
BstMCI CGRYCG 1 cut(s) 199
BstMWI GCNNNNNNNGC 3 cut(s) 259, 605, 791
BstNI CCWGG 2 cut(s) 272, 788
BstSCI CCNGG 3 cut(s) 270, 643, 786
BstSLI GKGCMC 5 cut(s) 645, 787, 796, 963, 1044
BstV1I GCAGC 2 cut(s) 860, 1043
BstV2I GAAGAC 1 cut(s) 53
BstX2I RGATCY 2 cut(s) 371, 985
BstYI RGATCY 2 cut(s) 371, 985
BstZI CGGCCG 1 cut(s) 196
BsuRI GGCC 5 cut(s) 198, 288, 599, 928, 1068
BtgI CCRYGG 1 cut(s) 1063
BtrI CACGTC 1 cut(s) 188
BtsCI GGATG 1 cut(s) 1015
BtsI GCAGTG 2 cut(s) 330, 633
BtsIMutI CAGTG 4 cut(s) 330, 610, 633, 775
Cac8I GCNNGC 1 cut(s) 783
CfoI GCGC 1 cut(s) 337
Cfr10I RCCGGY 2 cut(s) 194, 198
Cfr13I GGNCC 1 cut(s) 926
Csp6I GTAC 1 cut(s) 760
CspCI CAANNNNNGTGG 2 cut(s) 319, 354
CviAII CATG 5 cut(s) 302, 815, 853, 866, 1064
CviQI GTAC 1 cut(s) 760
DdeI CTNAG 8 cut(s) 101, 237, 278, 405, 594, 667, 797, 873
DpnI GATC 4 cut(s) 373, 970, 987, 1061
DpnII GATC 4 cut(s) 371, 968, 985, 1059
DriI GACNNNNNGTC 1 cut(s) 218
EaeI YGGCCR 2 cut(s) 196, 1066
EagI CGGCCG 1 cut(s) 196
Eam1105I GACNNNNNGTC 1 cut(s) 218
Ecl136II GAGCTC 1 cut(s) 775
EclXI CGGCCG 1 cut(s) 196
Eco130I CCWWGG 2 cut(s) 1050, 1063
Eco24I GRGCYC 1 cut(s) 777
Eco31I GGTCTC 1 cut(s) 167
Eco52I CGGCCG 1 cut(s) 196
Eco53kI GAGCTC 1 cut(s) 775
EcoICRI GAGCTC 1 cut(s) 775
EcoRI GAATTC 1 cut(s) 1014
EcoRII CCWGG 2 cut(s) 270, 786
EcoT14I CCWWGG 2 cut(s) 1050, 1063
EcoT38I GRGCYC 1 cut(s) 777
ErhI CCWWGG 2 cut(s) 1050, 1063
FaeI CATG 5 cut(s) 305, 818, 856, 869, 1067
FaqI GGGAC 2 cut(s) 554, 910
FatI CATG 5 cut(s) 301, 814, 852, 865, 1063
Fnu4HI GCNGC 2 cut(s) 849, 1032
FokI GGATG 1 cut(s) 1022
FriOI GRGCYC 1 cut(s) 777
Fsp4HI GCNGC 2 cut(s) 849, 1032
FspBI CTAG 1 cut(s) 1087
GlaI GCGC 1 cut(s) 336
GluI GCNGC 2 cut(s) 849, 1032
GsuI CTGGAG 1 cut(s) 345
HaeIII GGCC 5 cut(s) 198, 288, 599, 928, 1068
HapII CCGG 4 cut(s) 111, 195, 199, 645
HhaI GCGC 1 cut(s) 337
Hin1II CATG 5 cut(s) 305, 818, 856, 869, 1067
Hin6I GCGC 1 cut(s) 335
HinP1I GCGC 1 cut(s) 335
HindIII AAGCTT 2 cut(s) 425, 561
HinfI GANTC 3 cut(s) 95, 392, 682
HpaII CCGG 4 cut(s) 111, 195, 199, 645
HphI GGTGA 1 cut(s) 104
Hpy166II GTNNAC 2 cut(s) 310, 384
Hpy188I TCNGA 4 cut(s) 155, 208, 371, 681
Hpy188III TCNNGA 1 cut(s) 421
Hpy8I GTNNAC 2 cut(s) 310, 384
Hpy99I CGWCG 1 cut(s) 189
HpyAV CCTTC 3 cut(s) 538, 614, 730
HpyCH4III ACNGT 2 cut(s) 49, 770
HpyCH4IV ACGT 1 cut(s) 187
HpyCH4V TGCA 7 cut(s) 140, 191, 444, 608, 818, 848, 1001
HpyF10VI GCNNNNNNNGC 3 cut(s) 259, 605, 791
HpyF3I CTNAG 8 cut(s) 101, 237, 278, 405, 594, 667, 797, 873
HpySE526I ACGT 1 cut(s) 187
Hsp92II CATG 5 cut(s) 305, 818, 856, 869, 1067
HspAI GCGC 1 cut(s) 335
Kzo9I GATC 4 cut(s) 371, 968, 985, 1059
LmnI GCTCC 4 cut(s) 165, 209, 326, 623
Lsp1109I GCAGC 2 cut(s) 860, 1043
MaeI CTAG 1 cut(s) 1087
MaeII ACGT 1 cut(s) 187
MaeIII GTNAC 3 cut(s) 92, 104, 461
MalI GATC 4 cut(s) 373, 970, 987, 1061
MboI GATC 4 cut(s) 371, 968, 985, 1059
MboII GAAGA 3 cut(s) 53, 343, 984
MflI RGATCY 2 cut(s) 371, 985
MluCI AATT 6 cut(s) 78, 115, 347, 588, 943, 1014
MlyI GAGTC 2 cut(s) 89, 676
MroXI GAANNNNTTC 1 cut(s) 740
MseI TTAA 4 cut(s) 429, 549, 902, 1022
MslI CAYNNNNRTG 1 cut(s) 768
MspA1I CMGCKG 1 cut(s) 671
MspCI CTTAAG 1 cut(s) 428
MspI CCGG 4 cut(s) 111, 195, 199, 645
MspR9I CCNGG 3 cut(s) 272, 645, 788
Mva1269I GAATGC 2 cut(s) 140, 740
MvaI CCWGG 2 cut(s) 272, 788
MwoI GCNNNNNNNGC 3 cut(s) 259, 605, 791
NciI CCSGG 1 cut(s) 645
NcoI CCATGG 1 cut(s) 1063
NdeII GATC 4 cut(s) 371, 968, 985, 1059
NlaIII CATG 5 cut(s) 305, 818, 856, 869, 1067
NlaIV GGNNCC 3 cut(s) 328, 373, 642
NmuCI GTSAC 3 cut(s) 92, 104, 461
NspV TTCGAA 1 cut(s) 691
PasI CCCWGGG 1 cut(s) 787
PctI GAATGC 2 cut(s) 140, 740
PdmI GAANNNNTTC 1 cut(s) 740
PfeI GAWTC 1 cut(s) 392
PkrI GCNGC 2 cut(s) 850, 1033
PleI GAGTC 2 cut(s) 89, 676
PpsI GAGTC 2 cut(s) 89, 676
Psp124BI GAGCTC 1 cut(s) 777
Psp6I CCWGG 2 cut(s) 270, 786
PspGI CCWGG 2 cut(s) 270, 786
PspN4I GGNNCC 3 cut(s) 328, 373, 642
PspPI GGNCC 1 cut(s) 926
PsuI RGATCY 2 cut(s) 371, 985
PvuII CAGCTG 1 cut(s) 671
RsaI GTAC 1 cut(s) 761
RsaNI GTAC 1 cut(s) 760
RseI CAYNNNNRTG 1 cut(s) 768
SacI GAGCTC 1 cut(s) 777
SaqAI TTAA 4 cut(s) 429, 549, 902, 1022
SatI GCNGC 2 cut(s) 849, 1032
Sau3AI GATC 4 cut(s) 371, 968, 985, 1059
Sau96I GGNCC 1 cut(s) 926
SchI GAGTC 2 cut(s) 89, 676
ScrFI CCNGG 3 cut(s) 272, 645, 788
SfuI TTCGAA 1 cut(s) 691
SmiMI CAYNNNNRTG 1 cut(s) 768
SmlI CTYRAG 4 cut(s) 55, 397, 428, 776
SmoI CTYRAG 4 cut(s) 55, 397, 428, 776
Sse9I AATT 6 cut(s) 78, 115, 347, 588, 943, 1014
SspMI CTAG 1 cut(s) 1087
SstI GAGCTC 1 cut(s) 777
StyD4I CCNGG 3 cut(s) 270, 643, 786
StyI CCWWGG 2 cut(s) 1050, 1063
TaaI ACNGT 2 cut(s) 49, 770
TaiI ACGT 1 cut(s) 190
TaqI TCGA 2 cut(s) 184, 691
TasI AATT 6 cut(s) 78, 115, 347, 588, 943, 1014
TfiI GAWTC 1 cut(s) 392
Tru1I TTAA 4 cut(s) 429, 549, 902, 1022
Tru9I TTAA 4 cut(s) 429, 549, 902, 1022
TscAI CASTG 4 cut(s) 337, 610, 633, 775
TseFI GTSAC 3 cut(s) 92, 104, 461
TseI GCWGC 2 cut(s) 848, 1031
Tsp45I GTSAC 3 cut(s) 92, 104, 461
TspDTI ATGAA 2 cut(s) 17, 220
TspGWI ACGGA 1 cut(s) 364
TspRI CASTG 4 cut(s) 337, 610, 633, 775
Vha464I CTTAAG 1 cut(s) 428
XapI RAATTY 2 cut(s) 115, 1014
XmnI GAANNNNTTC 1 cut(s) 740
XspI CTAG 1 cut(s) 1087
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.