Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012578.1

Orthogroup ID

OG0009794

Physical Location & Seq

Genomic Coordinates Reverse (-)

28903 .. 30223

Gene Structure 1321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012578.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ctgtttctggtgggggagataggtggaaacgattacaactacgccttctttgttggtgggagcattaaacagctcaaagcctcggtgcctcttgttgtggatgcaattactaaggccaccggtgcattgatagaggaaggagcagtggagctagtggtgcctggaaatttgccaattgggtgctcagccgcctacttgactctgtatggaggccctaacaaagcttattatgataaacgaaatgggtgtttgaaggcgttcaatgcttttgccaagcaccataacaaagagctcaaacgtgccctagggacactagaagaaaaataccctcatgcaaggatcatatatgctgactactatggtgcttccatgcctttttatcatgcccctcaacattatgggtttacaagtggaagtctagcagcttgttgcggaggaggaggaccatacaacttcaacaattcggcatggtgtggacatattggttctaaggcttgcaaagatccatcgtcatatgcaaattgggatggacttcacttaacagaagcagcttatagccacattgccaagggtttgatccatggaaatttcaccgcacccatctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00901 ko01110 map00901 map01110

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

201

Amino Acids

21.5

Weight (kDa)

8.19

Isoelectric Point (pI)

48.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009794)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45910
fragaria_vesca	FvH4_4g04161
malus_domestica	MD10G1283000.v1.1
prunus_persica	Prupe.4G059000_v2.0.a1
pyrus_communis	pycom10g23600
rosa_chinensis	RchiOBHm_Chr5g0010211 RchiOBHm_Chr5g0010281
rosa_laevigata	RLG00000031731 RLG00000031734
rosa_multiflora	Rmu_co8154512.1_g000001 Rmu_sc0000818.1_g000017 Rmu_sc0012578.1_g000005
rosa_roxburghii	Rroxscaffold_1G00065960
rosa_rugosa	Rorug04G0450000
rosa_samantha	Rh5AG080700 Rh5AG081000 Rh5BG075900 Rh5CG089000 Rh5CG089200 Rh5DG076600
rosa_wichuraiana	Rw5G007500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	85, 157
AciI	CCGC	3 cut(s)	189, 432, 594
AclWI	GGATC	3 cut(s)	347, 497, 571
AcsI	RAATTY	2 cut(s)	166, 586
AgeI	ACCGGT	1 cut(s)	119
AgsI	TTSAA	3 cut(s)	253, 262, 457
AjnI	CCWGG	1 cut(s)	160
AluBI	AGCT	6 cut(s)	73, 151, 224, 292, 425, 551
AluI	AGCT	6 cut(s)	73, 151, 224, 292, 425, 551
Alw21I	GWGCWC	2 cut(s)	185, 294
AlwI	GGATC	3 cut(s)	347, 497, 571
AoxI	GGCC	2 cut(s)	114, 211
ApeKI	GCWGC	2 cut(s)	422, 548
ApoI	RAATTY	2 cut(s)	166, 586
AsiGI	ACCGGT	1 cut(s)	119
Asp700I	GAANNNNTTC	1 cut(s)	257
AspA2I	CCTAGG	1 cut(s)	304
AspS9I	GGNCC	2 cut(s)	212, 443
AsuHPI	GGTGA	1 cut(s)	583
AvaII	GGWCC	1 cut(s)	443
AvrII	CCTAGG	1 cut(s)	304
BaeGI	GKGCMC	1 cut(s)	304
BanI	GGYRCC	2 cut(s)	85, 157
BanII	GRGCYC	1 cut(s)	294
Bbv12I	GWGCWC	2 cut(s)	185, 294
BbvI	GCAGC	2 cut(s)	434, 560
BccI	CCATC	2 cut(s)	514, 521
BciT130I	CCWGG	1 cut(s)	162
BfaI	CTAG	5 cut(s)	152, 305, 314, 419, 604
BisI	GCNGC	3 cut(s)	189, 423, 549
BlnI	CCTAGG	1 cut(s)	304
BlpI	GCTNAGC	1 cut(s)	184
BlsI	GCNGC	3 cut(s)	190, 424, 550
Bme1390I	CCNGG	1 cut(s)	162
Bme18I	GGWCC	1 cut(s)	443
BmgT120I	GGNCC	2 cut(s)	212, 443
BmiI	GGNNCC	2 cut(s)	87, 159
BmrFI	CCNGG	1 cut(s)	162
BmsI	GCATC	1 cut(s)	91
Bpu1102I	GCTNAGC	1 cut(s)	184
BsaJI	CCNNGG	4 cut(s)	81, 304, 567, 580
BsaWI	WCCGGW	1 cut(s)	119
Bse118I	RCCGGY	1 cut(s)	119
Bse3DI	GCAATG	1 cut(s)	561
BseBI	CCWGG	1 cut(s)	162
BseDI	CCNNGG	4 cut(s)	81, 304, 567, 580
BseGI	GGATG	2 cut(s)	106, 532
BseMI	GCAATG	1 cut(s)	561
BseMII	CTCAG	1 cut(s)	198
BseRI	GAGGAG	2 cut(s)	450, 453
BseSI	GKGCMC	1 cut(s)	304
BseXI	GCAGC	2 cut(s)	434, 560
BshFI	GGCC	2 cut(s)	116, 213
BshNI	GGYRCC	2 cut(s)	85, 157
BshTI	ACCGGT	1 cut(s)	119
BsiHKAI	GWGCWC	2 cut(s)	185, 294
BsiSI	CCGG	1 cut(s)	120
BslFI	GGGAC	1 cut(s)	322
BsmFI	GGGAC	1 cut(s)	322
BsnI	GGCC	2 cut(s)	116, 213
Bsp1286I	GDGCHC	3 cut(s)	185, 294, 304
Bsp143I	GATC	3 cut(s)	339, 502, 576
Bsp1720I	GCTNAGC	1 cut(s)	184
Bsp19I	CCATGG	1 cut(s)	580
BspACI	CCGC	3 cut(s)	189, 432, 594
BspANI	GGCC	2 cut(s)	116, 213
BspCNI	CTCAG	1 cut(s)	197
BspLI	GGNNCC	2 cut(s)	87, 159
BspPI	GGATC	3 cut(s)	347, 497, 571
BspT107I	GGYRCC	2 cut(s)	85, 157
BsrDI	GCAATG	1 cut(s)	561
BsrFI	RCCGGY	1 cut(s)	119
BssAI	RCCGGY	1 cut(s)	119
BssECI	CCNNGG	4 cut(s)	81, 304, 567, 580
BssMI	GATC	3 cut(s)	339, 502, 576
BssT1I	CCWWGG	3 cut(s)	304, 567, 580
Bst2UI	CCWGG	1 cut(s)	162
BstC8I	GCNNGC	1 cut(s)	496
BstDEI	CTNAG	3 cut(s)	111, 184, 489
BstDSI	CCRYGG	1 cut(s)	580
BstF5I	GGATG	2 cut(s)	106, 532
BstKTI	GATC	3 cut(s)	342, 505, 579
BstMBI	GATC	3 cut(s)	339, 502, 576
BstMWI	GCNNNNNNNGC	3 cut(s)	122, 157, 263
BstNI	CCWGG	1 cut(s)	162
BstSCI	CCNGG	1 cut(s)	160
BstSLI	GKGCMC	1 cut(s)	304
BstV1I	GCAGC	2 cut(s)	434, 560
BstX2I	RGATCY	1 cut(s)	502
BstYI	RGATCY	1 cut(s)	502
BsuRI	GGCC	2 cut(s)	116, 213
BtgI	CCRYGG	1 cut(s)	580
BtsCI	GGATG	2 cut(s)	106, 532
BtsI	GCAGTG	1 cut(s)	150
BtsIMutI	CAGTG	1 cut(s)	150
Cac8I	GCNNGC	1 cut(s)	496
Cfr10I	RCCGGY	1 cut(s)	119
Cfr13I	GGNCC	2 cut(s)	212, 443
CspAI	ACCGGT	1 cut(s)	119
CviAII	CATG	5 cut(s)	332, 370, 383, 468, 581
DdeI	CTNAG	3 cut(s)	111, 184, 489
DpnI	GATC	3 cut(s)	341, 504, 578
DpnII	GATC	3 cut(s)	339, 502, 576
Ecl136II	GAGCTC	1 cut(s)	292
Eco130I	CCWWGG	3 cut(s)	304, 567, 580
Eco24I	GRGCYC	1 cut(s)	294
Eco47I	GGWCC	1 cut(s)	443
Eco53kI	GAGCTC	1 cut(s)	292
EcoICRI	GAGCTC	1 cut(s)	292
EcoO109I	RGGNCCY	1 cut(s)	212
EcoRII	CCWGG	1 cut(s)	160
EcoT14I	CCWWGG	3 cut(s)	304, 567, 580
EcoT38I	GRGCYC	1 cut(s)	294
ErhI	CCWWGG	3 cut(s)	304, 567, 580
FaeI	CATG	5 cut(s)	335, 373, 386, 471, 584
FaqI	GGGAC	1 cut(s)	322
FatI	CATG	5 cut(s)	331, 369, 382, 467, 580
FauNDI	CATATG	1 cut(s)	514
Fnu4HI	GCNGC	3 cut(s)	189, 423, 549
FokI	GGATG	2 cut(s)	113, 539
FriOI	GRGCYC	1 cut(s)	294
Fsp4HI	GCNGC	3 cut(s)	189, 423, 549
FspBI	CTAG	5 cut(s)	152, 305, 314, 419, 604
GluI	GCNGC	3 cut(s)	189, 423, 549
HaeIII	GGCC	2 cut(s)	116, 213
HapII	CCGG	1 cut(s)	120
Hin1II	CATG	5 cut(s)	335, 373, 386, 471, 584
HindIII	AAGCTT	1 cut(s)	222
HinfI	GANTC	1 cut(s)	199
HpaII	CCGG	1 cut(s)	120
HphI	GGTGA	1 cut(s)	583
Hpy166II	GTNNAC	2 cut(s)	405, 476
Hpy8I	GTNNAC	2 cut(s)	405, 476
HpyAV	CCTTC	3 cut(s)	55, 131, 247
HpyCH4IV	ACGT	1 cut(s)	298
HpyCH4V	TGCA	5 cut(s)	104, 125, 335, 498, 518
HpyF10VI	GCNNNNNNNGC	3 cut(s)	122, 157, 263
HpyF3I	CTNAG	3 cut(s)	111, 184, 489
HpySE526I	ACGT	1 cut(s)	298
Hsp92II	CATG	5 cut(s)	335, 373, 386, 471, 584
Kzo9I	GATC	3 cut(s)	339, 502, 576
LmnI	GCTCC	3 cut(s)	60, 140, 148
LpnPI	CCDG	3 cut(s)	133, 147, 174
Lsp1109I	GCAGC	2 cut(s)	434, 560
LweI	GCATC	1 cut(s)	91
MaeI	CTAG	5 cut(s)	152, 305, 314, 419, 604
MaeII	ACGT	1 cut(s)	298
MalI	GATC	3 cut(s)	341, 504, 578
MboI	GATC	3 cut(s)	339, 502, 576
MboII	GAAGA	1 cut(s)	329
MfeI	CAATTG	1 cut(s)	174
MflI	RGATCY	1 cut(s)	502
MhlI	GDGCHC	3 cut(s)	185, 294, 304
MluCI	AATT	6 cut(s)	105, 166, 174, 460, 520, 586
MlyI	GAGTC	1 cut(s)	193
MnlI	CCTC	9 cut(s)	91, 99, 127, 203, 339, 399, 428, 431, 434
MroXI	GAANNNNTTC	1 cut(s)	257
MseI	TTAA	2 cut(s)	66, 539
MspI	CCGG	1 cut(s)	120
MspR9I	CCNGG	1 cut(s)	162
MunI	CAATTG	1 cut(s)	174
MvaI	CCWGG	1 cut(s)	162
MwoI	GCNNNNNNNGC	3 cut(s)	122, 157, 263
NcoI	CCATGG	1 cut(s)	580
NdeI	CATATG	1 cut(s)	514
NdeII	GATC	3 cut(s)	339, 502, 576
NlaIII	CATG	5 cut(s)	335, 373, 386, 471, 584
NlaIV	GGNNCC	2 cut(s)	87, 159
PdmI	GAANNNNTTC	1 cut(s)	257
PinAI	ACCGGT	1 cut(s)	119
PkrI	GCNGC	3 cut(s)	190, 424, 550
PleI	GAGTC	1 cut(s)	193
PpsI	GAGTC	1 cut(s)	193
Psp124BI	GAGCTC	1 cut(s)	294
Psp6I	CCWGG	1 cut(s)	160
PspGI	CCWGG	1 cut(s)	160
PspN4I	GGNNCC	2 cut(s)	87, 159
PspPI	GGNCC	2 cut(s)	212, 443
PsuI	RGATCY	1 cut(s)	502
SacI	GAGCTC	1 cut(s)	294
SaqAI	TTAA	2 cut(s)	66, 539
SatI	GCNGC	3 cut(s)	189, 423, 549
Sau3AI	GATC	3 cut(s)	339, 502, 576
Sau96I	GGNCC	2 cut(s)	212, 443
SchI	GAGTC	1 cut(s)	193
ScrFI	CCNGG	1 cut(s)	162
SduI	GDGCHC	3 cut(s)	185, 294, 304
SetI	ASST	8 cut(s)	25, 75, 153, 226, 294, 301, 427, 553
SfaNI	GCATC	1 cut(s)	91
SgrAI	CRCCGGYG	1 cut(s)	119
SinI	GGWCC	1 cut(s)	443
Sse9I	AATT	6 cut(s)	105, 166, 174, 460, 520, 586
SsiI	CCGC	3 cut(s)	189, 432, 594
SspMI	CTAG	5 cut(s)	152, 305, 314, 419, 604
SstI	GAGCTC	1 cut(s)	294
StyD4I	CCNGG	1 cut(s)	160
StyI	CCWWGG	3 cut(s)	304, 567, 580
TaiI	ACGT	1 cut(s)	301
TasI	AATT	6 cut(s)	105, 166, 174, 460, 520, 586
TauI	GCSGC	1 cut(s)	191
Tru1I	TTAA	2 cut(s)	66, 539
Tru9I	TTAA	2 cut(s)	66, 539
TscAI	CASTG	1 cut(s)	150
TseI	GCWGC	2 cut(s)	422, 548
TspRI	CASTG	1 cut(s)	150
VpaK11BI	GGWCC	1 cut(s)	443
XapI	RAATTY	2 cut(s)	166, 586
XmaJI	CCTAGG	1 cut(s)	304
XmnI	GAANNNNTTC	1 cut(s)	257
XspI	CTAG	5 cut(s)	152, 305, 314, 419, 604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.