RLG00000031734

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0009794
Physical Location & Seq
Forward (+)
7879319 .. 7881637
2319 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031734

Sequence Viewer

Length: 693 bp
ATGGCATCGATTCTGGCCACAAACTACTCCTTGAGCACTCAGCTTGGTTGGTTCAAGGAGCTCAAGCCCTCACTCTGCAACACCAAACAAGAATGTGAGAACTACTTCAAGAAGTCTCTGTTTCTGGTGGGGGAGATAGGTGGAAACGATTACAACTACGCCTTCTTTCTTGGTGGGAGCATTAAACAGCTGAAAGCCTCGGTGCCTCTTGTTGTGGATGCAATTACTAAGGCCACCGGTGCATTGATAGAGGAAGGAGCAGTGGAGCTAGTGGTGCCTGGAAACTTGCCAATTGGGTGCTCAGCCGTCTACTTGACTCTGTATGGAGGCCCTAACAAGCTTATTACGATAAACGAAATGGGTCACCATAACAAACAGCTCAAACGTGCCCTAGGGACACTAGAAGAAAAATACCCTCATGCAAGGATCATATATGCCGACTACTATGGTGCTTCCATGCCTTTTTATCATGCCCCTCAACATTATGGGTTCACAAGTGGAAGTCTAGCAGCTTGTTGCGGAGGAGGAGGACCATACAACTTCAACAATTCAGCAAGGTGTGGACATATTGGTTCTAAGGCTTGCAAAGATCCATCGTCGTACACAAATTGGGATGGACTTCACTTAACAGAAGCAGCTTATAGCCACATTGCCAAGGGTTTGATCCATGGAAATTTCACCGCACCCATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00901 ko01110 map00901 map01110
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

231

Amino Acids

24.84

Weight (kDa)

8.1

Isoelectric Point (pI)

42.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 26 - 220 2.7e-14 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 202, 274
AccI GTMKAC 1 cut(s) 309
AciI CCGC 2 cut(s) 519, 681
AclWI GGATC 3 cut(s) 434, 584, 658
AcoI YGGCCR 1 cut(s) 15
AcsI RAATTY 1 cut(s) 673
AfaI GTAC 1 cut(s) 602
AgeI ACCGGT 1 cut(s) 236
AgsI TTSAA 3 cut(s) 55, 109, 544
AjnI CCWGG 1 cut(s) 277
AluBI AGCT 8 cut(s) 43, 61, 190, 268, 340, 379, 512, 638
AluI AGCT 8 cut(s) 43, 61, 190, 268, 340, 379, 512, 638
Alw21I GWGCWC 3 cut(s) 38, 63, 302
Alw26I GTCTC 1 cut(s) 120
AlwI GGATC 3 cut(s) 434, 584, 658
AoxI GGCC 3 cut(s) 15, 231, 328
ApeKI GCWGC 2 cut(s) 509, 635
ApoI RAATTY 1 cut(s) 673
AsiGI ACCGGT 1 cut(s) 236
Asp700I GAANNNNTTC 1 cut(s) 104
AspA2I CCTAGG 1 cut(s) 391
AspS9I GGNCC 2 cut(s) 329, 530
AsuHPI GGTGA 2 cut(s) 356, 670
AvaII GGWCC 1 cut(s) 530
AvrII CCTAGG 1 cut(s) 391
BaeGI GKGCMC 1 cut(s) 391
BalI TGGCCA 1 cut(s) 17
BanI GGYRCC 2 cut(s) 202, 274
BanII GRGCYC 1 cut(s) 63
Bbv12I GWGCWC 3 cut(s) 38, 63, 302
BbvI GCAGC 2 cut(s) 521, 647
BccI CCATC 2 cut(s) 601, 608
BceAI ACGGC 1 cut(s) 290
BciT130I CCWGG 1 cut(s) 279
BcoDI GTCTC 1 cut(s) 120
BfaI CTAG 5 cut(s) 269, 392, 401, 506, 691
BisI GCNGC 2 cut(s) 510, 636
BlnI CCTAGG 1 cut(s) 391
BlpI GCTNAGC 1 cut(s) 301
BlsI GCNGC 2 cut(s) 511, 637
Bme1390I CCNGG 1 cut(s) 279
Bme18I GGWCC 1 cut(s) 530
BmgT120I GGNCC 2 cut(s) 329, 530
BmiI GGNNCC 2 cut(s) 204, 276
BmrFI CCNGG 1 cut(s) 279
BmsI GCATC 2 cut(s) 14, 208
Bpu1102I GCTNAGC 1 cut(s) 301
BpuEI CTTGAG 2 cut(s) 47, 52
Bsa29I ATCGAT 1 cut(s) 8
BsaJI CCNNGG 4 cut(s) 198, 391, 654, 667
BsaWI WCCGGW 1 cut(s) 236
Bse118I RCCGGY 1 cut(s) 236
Bse3DI GCAATG 1 cut(s) 648
BseBI CCWGG 1 cut(s) 279
BseCI ATCGAT 1 cut(s) 8
BseDI CCNNGG 4 cut(s) 198, 391, 654, 667
BseGI GGATG 2 cut(s) 223, 619
BseMI GCAATG 1 cut(s) 648
BseMII CTCAG 2 cut(s) 53, 315
BseRI GAGGAG 2 cut(s) 537, 540
BseSI GKGCMC 1 cut(s) 391
BseXI GCAGC 2 cut(s) 521, 647
BshFI GGCC 3 cut(s) 17, 233, 330
BshNI GGYRCC 2 cut(s) 202, 274
BshTI ACCGGT 1 cut(s) 236
BshVI ATCGAT 1 cut(s) 8
BsiHKAI GWGCWC 3 cut(s) 38, 63, 302
BsiSI CCGG 1 cut(s) 237
BslFI GGGAC 1 cut(s) 409
BsmAI GTCTC 1 cut(s) 120
BsmFI GGGAC 1 cut(s) 409
BsnI GGCC 3 cut(s) 17, 233, 330
Bsp1286I GDGCHC 4 cut(s) 38, 63, 302, 391
Bsp143I GATC 3 cut(s) 426, 589, 663
Bsp1720I GCTNAGC 1 cut(s) 301
Bsp19I CCATGG 1 cut(s) 667
BspACI CCGC 2 cut(s) 519, 681
BspANI GGCC 3 cut(s) 17, 233, 330
BspCNI CTCAG 2 cut(s) 52, 314
BspDI ATCGAT 1 cut(s) 8
BspLI GGNNCC 2 cut(s) 204, 276
BspPI GGATC 3 cut(s) 434, 584, 658
BspT107I GGYRCC 2 cut(s) 202, 274
BsrDI GCAATG 1 cut(s) 648
BsrFI RCCGGY 1 cut(s) 236
BssAI RCCGGY 1 cut(s) 236
BssECI CCNNGG 4 cut(s) 198, 391, 654, 667
BssMI GATC 3 cut(s) 426, 589, 663
BssT1I CCWWGG 3 cut(s) 391, 654, 667
Bst2UI CCWGG 1 cut(s) 279
BstC8I GCNNGC 1 cut(s) 583
BstDEI CTNAG 4 cut(s) 39, 228, 301, 576
BstDSI CCRYGG 1 cut(s) 667
BstEII GGTNACC 1 cut(s) 362
BstF5I GGATG 2 cut(s) 223, 619
BstKTI GATC 3 cut(s) 429, 592, 666
BstMAI GTCTC 1 cut(s) 120
BstMBI GATC 3 cut(s) 426, 589, 663
BstMWI GCNNNNNNNGC 2 cut(s) 239, 274
BstNI CCWGG 1 cut(s) 279
BstPI GGTNACC 1 cut(s) 362
BstSCI CCNGG 1 cut(s) 277
BstSLI GKGCMC 1 cut(s) 391
BstV1I GCAGC 2 cut(s) 521, 647
BstX2I RGATCY 1 cut(s) 589
BstYI RGATCY 1 cut(s) 589
Bsu15I ATCGAT 1 cut(s) 8
BsuRI GGCC 3 cut(s) 17, 233, 330
BsuTUI ATCGAT 1 cut(s) 8
BtgI CCRYGG 1 cut(s) 667
BtsCI GGATG 2 cut(s) 223, 619
BtsI GCAGTG 1 cut(s) 267
BtsIMutI CAGTG 1 cut(s) 267
Cac8I GCNNGC 1 cut(s) 583
Cfr10I RCCGGY 1 cut(s) 236
Cfr13I GGNCC 2 cut(s) 329, 530
ClaI ATCGAT 1 cut(s) 8
Csp6I GTAC 1 cut(s) 601
CspAI ACCGGT 1 cut(s) 236
CviAII CATG 4 cut(s) 419, 457, 470, 668
CviQI GTAC 1 cut(s) 601
DdeI CTNAG 4 cut(s) 39, 228, 301, 576
DpnI GATC 3 cut(s) 428, 591, 665
DpnII GATC 3 cut(s) 426, 589, 663
EaeI YGGCCR 1 cut(s) 15
Ecl136II GAGCTC 1 cut(s) 61
Eco130I CCWWGG 3 cut(s) 391, 654, 667
Eco24I GRGCYC 1 cut(s) 63
Eco47I GGWCC 1 cut(s) 530
Eco53kI GAGCTC 1 cut(s) 61
Eco91I GGTNACC 1 cut(s) 362
EcoICRI GAGCTC 1 cut(s) 61
EcoO109I RGGNCCY 1 cut(s) 329
EcoO65I GGTNACC 1 cut(s) 362
EcoRII CCWGG 1 cut(s) 277
EcoT14I CCWWGG 3 cut(s) 391, 654, 667
EcoT38I GRGCYC 1 cut(s) 63
ErhI CCWWGG 3 cut(s) 391, 654, 667
FaeI CATG 4 cut(s) 422, 460, 473, 671
FaqI GGGAC 1 cut(s) 409
FatI CATG 4 cut(s) 418, 456, 469, 667
FblI GTMKAC 1 cut(s) 309
Fnu4HI GCNGC 2 cut(s) 510, 636
FokI GGATG 2 cut(s) 230, 626
FriOI GRGCYC 1 cut(s) 63
Fsp4HI GCNGC 2 cut(s) 510, 636
FspBI CTAG 5 cut(s) 269, 392, 401, 506, 691
GluI GCNGC 2 cut(s) 510, 636
HaeIII GGCC 3 cut(s) 17, 233, 330
HapII CCGG 1 cut(s) 237
Hin1II CATG 4 cut(s) 422, 460, 473, 671
HindIII AAGCTT 1 cut(s) 338
HinfI GANTC 2 cut(s) 10, 316
HpaII CCGG 1 cut(s) 237
HphI GGTGA 2 cut(s) 356, 670
Hpy166II GTNNAC 4 cut(s) 310, 492, 563, 603
Hpy188III TCNNGA 1 cut(s) 109
Hpy8I GTNNAC 4 cut(s) 310, 492, 563, 603
Hpy99I CGWCG 1 cut(s) 601
HpyAV CCTTC 2 cut(s) 172, 248
HpyCH4IV ACGT 1 cut(s) 385
HpyCH4V TGCA 5 cut(s) 78, 221, 242, 422, 585
HpyF10VI GCNNNNNNNGC 2 cut(s) 239, 274
HpyF3I CTNAG 4 cut(s) 39, 228, 301, 576
HpySE526I ACGT 1 cut(s) 385
Hsp92II CATG 4 cut(s) 422, 460, 473, 671
Kzo9I GATC 3 cut(s) 426, 589, 663
LmnI GCTCC 4 cut(s) 58, 177, 257, 265
LpnPI CCDG 4 cut(s) 110, 250, 264, 291
Lsp1109I GCAGC 2 cut(s) 521, 647
LweI GCATC 2 cut(s) 14, 208
MaeI CTAG 5 cut(s) 269, 392, 401, 506, 691
MaeII ACGT 1 cut(s) 385
MaeIII GTNAC 1 cut(s) 362
MalI GATC 3 cut(s) 428, 591, 665
MboI GATC 3 cut(s) 426, 589, 663
MboII GAAGA 1 cut(s) 416
MfeI CAATTG 1 cut(s) 291
MflI RGATCY 1 cut(s) 589
MhlI GDGCHC 4 cut(s) 38, 63, 302, 391
MlsI TGGCCA 1 cut(s) 17
MluCI AATT 5 cut(s) 222, 291, 547, 607, 673
MluNI TGGCCA 1 cut(s) 17
MlyI GAGTC 1 cut(s) 310
Mox20I TGGCCA 1 cut(s) 17
MroXI GAANNNNTTC 1 cut(s) 104
MscI TGGCCA 1 cut(s) 17
MseI TTAA 2 cut(s) 183, 626
Msp20I TGGCCA 1 cut(s) 17
MspA1I CMGCKG 1 cut(s) 190
MspI CCGG 1 cut(s) 237
MspR9I CCNGG 1 cut(s) 279
MunI CAATTG 1 cut(s) 291
MvaI CCWGG 1 cut(s) 279
MwoI GCNNNNNNNGC 2 cut(s) 239, 274
NcoI CCATGG 1 cut(s) 667
NdeII GATC 3 cut(s) 426, 589, 663
NlaIII CATG 4 cut(s) 422, 460, 473, 671
NlaIV GGNNCC 2 cut(s) 204, 276
NmuCI GTSAC 1 cut(s) 362
PdmI GAANNNNTTC 1 cut(s) 104
PfeI GAWTC 1 cut(s) 10
PinAI ACCGGT 1 cut(s) 236
PkrI GCNGC 2 cut(s) 511, 637
PleI GAGTC 1 cut(s) 310
PpsI GAGTC 1 cut(s) 310
Psp124BI GAGCTC 1 cut(s) 63
Psp6I CCWGG 1 cut(s) 277
PspEI GGTNACC 1 cut(s) 362
PspGI CCWGG 1 cut(s) 277
PspN4I GGNNCC 2 cut(s) 204, 276
PspPI GGNCC 2 cut(s) 329, 530
PsuI RGATCY 1 cut(s) 589
PvuII CAGCTG 1 cut(s) 190
RsaI GTAC 1 cut(s) 602
RsaNI GTAC 1 cut(s) 601
SacI GAGCTC 1 cut(s) 63
SaqAI TTAA 2 cut(s) 183, 626
SatI GCNGC 2 cut(s) 510, 636
Sau3AI GATC 3 cut(s) 426, 589, 663
Sau96I GGNCC 2 cut(s) 329, 530
SchI GAGTC 1 cut(s) 310
ScrFI CCNGG 1 cut(s) 279
SduI GDGCHC 4 cut(s) 38, 63, 302, 391
SfaNI GCATC 2 cut(s) 14, 208
SgrAI CRCCGGYG 1 cut(s) 236
SinI GGWCC 1 cut(s) 530
SmlI CTYRAG 2 cut(s) 31, 62
SmoI CTYRAG 2 cut(s) 31, 62
Sse9I AATT 5 cut(s) 222, 291, 547, 607, 673
SsiI CCGC 2 cut(s) 519, 681
SspMI CTAG 5 cut(s) 269, 392, 401, 506, 691
SstI GAGCTC 1 cut(s) 63
StyD4I CCNGG 1 cut(s) 277
StyI CCWWGG 3 cut(s) 391, 654, 667
TaiI ACGT 1 cut(s) 388
TaqI TCGA 1 cut(s) 8
TasI AATT 5 cut(s) 222, 291, 547, 607, 673
TfiI GAWTC 1 cut(s) 10
Tru1I TTAA 2 cut(s) 183, 626
Tru9I TTAA 2 cut(s) 183, 626
TscAI CASTG 1 cut(s) 267
TseFI GTSAC 1 cut(s) 362
TseI GCWGC 2 cut(s) 509, 635
Tsp45I GTSAC 1 cut(s) 362
TspRI CASTG 1 cut(s) 267
VpaK11BI GGWCC 1 cut(s) 530
XapI RAATTY 1 cut(s) 673
XmaJI CCTAGG 1 cut(s) 391
XmiI GTMKAC 1 cut(s) 309
XmnI GAANNNNTTC 1 cut(s) 104
XspI CTAG 5 cut(s) 269, 392, 401, 506, 691
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.