Rh5AG080700

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0009794
Physical Location & Seq
Forward (+)
6894129 .. 6894722
594 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG080700.1

Sequence Viewer

Length: 444 bp
ATGACCTTTTTTCATCTTCCAACTGGGCGGAGCTCGAATGGACGTGTTCCTGTTGATTTCCTTACTGAGGCATTTGAGTTGCCATTTTTACCACCCTACCTAACACTGAAGAAAGGCCAAGATTTTTACCATGGAGTGAACTTTGCTGTTGCTTCACTAGACCCAGAATACTTCTACCAAAGAAAAATTGGATCAACTCTGTTAACAAACTACTCCTTGAGCACTCAGCTTGGTTGGTTCAAGAAGCTCAAGTCCTCACTCTGCAACAACAAGCAAGGTAACAACATTCTGCATATCAGAAAACAAACCTACCTAATTCCATATTTATTTCACGTTTGGTTGATCACAGAATGCGACAACTACTTCAAGAAGGCTCTCCTTCTGGTGGGGGAGATAGGTGGAAACGATAACAATTACCCCTTCTTCGCAGGTGTGACTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00901 ko01110 map00901 map01110
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

147

Amino Acids

16.88

Weight (kDa)

9.06

Isoelectric Point (pI)

43.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 419
Acc36I ACCTGC 1 cut(s) 419
AciI CCGC 1 cut(s) 28
AclWI GGATC 1 cut(s) 199
AcuI CTGAAG 1 cut(s) 128
AfiI CCNNNNNNNGG 2 cut(s) 67, 385
AflIII ACRYGT 1 cut(s) 43
AgsI TTSAA 2 cut(s) 241, 367
AjiI CACGTC 1 cut(s) 44
AluBI AGCT 3 cut(s) 33, 229, 247
AluI AGCT 3 cut(s) 33, 229, 247
Alw21I GWGCWC 2 cut(s) 35, 224
AlwI GGATC 1 cut(s) 199
AoxI GGCC 1 cut(s) 115
BanII GRGCYC 1 cut(s) 35
Bbv12I GWGCWC 2 cut(s) 35, 224
BclI TGATCA 1 cut(s) 342
BfaI CTAG 1 cut(s) 158
BfuAI ACCTGC 1 cut(s) 419
BmgBI CACGTC 1 cut(s) 44
BmrI ACTGGG 1 cut(s) 33
BmuI ACTGGG 1 cut(s) 33
BpuEI CTTGAG 2 cut(s) 233, 238
BsaJI CCNNGG 1 cut(s) 130
Bsc4I CCNNNNNNNGG 2 cut(s) 67, 385
Bse1I ACTGG 1 cut(s) 28
BseDI CCNNGG 1 cut(s) 130
BseLI CCNNNNNNNGG 2 cut(s) 67, 385
BseMII CTCAG 2 cut(s) 57, 239
BseNI ACTGG 1 cut(s) 28
BshFI GGCC 1 cut(s) 117
BsiHKAI GWGCWC 2 cut(s) 35, 224
BslI CCNNNNNNNGG 2 cut(s) 67, 385
BsmI GAATGC 1 cut(s) 356
BsnI GGCC 1 cut(s) 117
Bsp1286I GDGCHC 2 cut(s) 35, 224
Bsp143I GATC 2 cut(s) 191, 342
Bsp19I CCATGG 1 cut(s) 130
BspACI CCGC 1 cut(s) 28
BspANI GGCC 1 cut(s) 117
BspCNI CTCAG 2 cut(s) 58, 238
BspMI ACCTGC 1 cut(s) 419
BspPI GGATC 1 cut(s) 199
BsrI ACTGG 1 cut(s) 28
BssECI CCNNGG 1 cut(s) 130
BssMI GATC 2 cut(s) 191, 342
BssT1I CCWWGG 1 cut(s) 130
Bst4CI ACNGT 1 cut(s) 439
BstDEI CTNAG 2 cut(s) 66, 225
BstDSI CCRYGG 1 cut(s) 130
BstENI CCTNNNNNAGG 1 cut(s) 65
BstKTI GATC 2 cut(s) 194, 345
BstMBI GATC 2 cut(s) 191, 342
BsuRI GGCC 1 cut(s) 117
BtgI CCRYGG 1 cut(s) 130
BtrI CACGTC 1 cut(s) 44
BtsIMutI CAGTG 1 cut(s) 104
BveI ACCTGC 1 cut(s) 419
CviAII CATG 1 cut(s) 131
CviJI RGCY 5 cut(s) 33, 117, 229, 247, 374
CviKI_1 RGCY 5 cut(s) 33, 117, 229, 247, 374
DdeI CTNAG 2 cut(s) 66, 225
DpnI GATC 2 cut(s) 193, 344
DpnII GATC 2 cut(s) 191, 342
EciI GGCGGA 1 cut(s) 43
Ecl136II GAGCTC 1 cut(s) 33
Eco130I CCWWGG 1 cut(s) 130
Eco24I GRGCYC 1 cut(s) 35
Eco53kI GAGCTC 1 cut(s) 33
Eco57I CTGAAG 1 cut(s) 128
EcoICRI GAGCTC 1 cut(s) 33
EcoNI CCTNNNNNAGG 1 cut(s) 65
EcoT14I CCWWGG 1 cut(s) 130
EcoT38I GRGCYC 1 cut(s) 35
ErhI CCWWGG 1 cut(s) 130
FaeI CATG 1 cut(s) 134
FaiI YATR 3 cut(s) 132, 294, 322
FatI CATG 1 cut(s) 130
FbaI TGATCA 1 cut(s) 342
FriOI GRGCYC 1 cut(s) 35
FspBI CTAG 1 cut(s) 158
HaeIII GGCC 1 cut(s) 117
Hin1II CATG 1 cut(s) 134
HincII GTYRAC 1 cut(s) 204
HindII GTYRAC 1 cut(s) 204
HpaI GTTAAC 1 cut(s) 204
Hpy166II GTNNAC 2 cut(s) 139, 204
Hpy188I TCNGA 1 cut(s) 299
Hpy188III TCNNGA 2 cut(s) 241, 367
Hpy8I GTNNAC 2 cut(s) 139, 204
HpyAV CCTTC 3 cut(s) 364, 389, 430
HpyCH4III ACNGT 1 cut(s) 439
HpyCH4IV ACGT 2 cut(s) 43, 333
HpyCH4V TGCA 2 cut(s) 264, 292
HpyF3I CTNAG 2 cut(s) 66, 225
HpySE526I ACGT 2 cut(s) 43, 333
Hsp92II CATG 1 cut(s) 134
Ksp22I TGATCA 1 cut(s) 342
KspAI GTTAAC 1 cut(s) 204
Kzo9I GATC 2 cut(s) 191, 342
LmnI GCTCC 1 cut(s) 30
LpnPI CCDG 5 cut(s) 9, 63, 177, 368, 414
MaeI CTAG 1 cut(s) 158
MaeII ACGT 2 cut(s) 43, 333
MaeIII GTNAC 2 cut(s) 278, 433
MalI GATC 2 cut(s) 193, 344
MboI GATC 2 cut(s) 191, 342
MboII GAAGA 3 cut(s) 8, 121, 415
MhlI GDGCHC 2 cut(s) 35, 224
MluCI AATT 3 cut(s) 186, 315, 412
MmeI TCCRAC 1 cut(s) 44
MnlI CCTC 2 cut(s) 61, 265
MseI TTAA 1 cut(s) 203
Mva1269I GAATGC 1 cut(s) 356
NcoI CCATGG 1 cut(s) 130
NdeII GATC 2 cut(s) 191, 342
NlaIII CATG 1 cut(s) 134
NmuCI GTSAC 1 cut(s) 433
PaqCI CACCTGC 1 cut(s) 419
PctI GAATGC 1 cut(s) 356
Psp124BI GAGCTC 1 cut(s) 35
SacI GAGCTC 1 cut(s) 35
SaqAI TTAA 1 cut(s) 203
Sau3AI GATC 2 cut(s) 191, 342
SduI GDGCHC 2 cut(s) 35, 224
SmlI CTYRAG 2 cut(s) 217, 248
SmoI CTYRAG 2 cut(s) 217, 248
Sse9I AATT 3 cut(s) 186, 315, 412
SsiI CCGC 1 cut(s) 28
SspMI CTAG 1 cut(s) 158
SstI GAGCTC 1 cut(s) 35
StyI CCWWGG 1 cut(s) 130
TaaI ACNGT 1 cut(s) 439
TaiI ACGT 2 cut(s) 46, 336
TaqI TCGA 1 cut(s) 35
TasI AATT 3 cut(s) 186, 315, 412
Tru1I TTAA 1 cut(s) 203
Tru9I TTAA 1 cut(s) 203
TscAI CASTG 1 cut(s) 111
TseFI GTSAC 1 cut(s) 433
Tsp45I GTSAC 1 cut(s) 433
TspRI CASTG 1 cut(s) 111
XagI CCTNNNNNAGG 1 cut(s) 65
XcmI CCANNNNNNNNNTGG 1 cut(s) 185
XspI CTAG 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.