Prupe.4G068400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0011605
Physical Location & Seq
Forward (+)
3322170 .. 3322968
799 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G068400.1

Sequence Viewer

Length: 357 bp
ATGGCAACCCGGTTCCCGAGTCCGAGTCCGAGTCATAAAGTGGCGAGCTTGGTCCTGGTCCTGGTCCTCTTAGCTAGCCTCTACGGCTCCTGCCGTGGATCTGAGTCTCGGATCCATCCGGGTCGCGACCTGTTGGCCACTCAAAGGAGGAACAACGGCAGTCAGAACCAGATCCCGAGCTGCAACGACATGTCGTCGGAGTCACAGTGCTCCCGGAACCCAAAGTGCCGGTGGTGCCGCAGCGACGTCCTCAACGACATGTGCTTCCCAAAGCTCGAGGCTTTGCGCTTACCCCTACAGGTCTTCTCTTGCAAAATTGACTACAGTCGTCTCAACAGAAATCATGAGAAAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.29

Weight (kDa)

9.49

Isoelectric Point (pI)

74.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 249
AccB1I GGYRCC 1 cut(s) 234
AccII CGCG 1 cut(s) 126
AciI CCGC 1 cut(s) 238
AclWI GGATC 4 cut(s) 106, 106, 119, 166
AcoI YGGCCR 1 cut(s) 135
AcyI GRCGYC 1 cut(s) 246
AfiI CCNNNNNNNGG 2 cut(s) 61, 144
AflIII ACRYGT 2 cut(s) 189, 258
AhdI GACNNNNNGTC 1 cut(s) 193
AjnI CCWGG 2 cut(s) 54, 60
AluBI AGCT 5 cut(s) 48, 74, 180, 274, 353
AluI AGCT 5 cut(s) 48, 74, 180, 274, 353
Alw21I GWGCWC 1 cut(s) 212
Alw26I GTCTC 2 cut(s) 111, 335
AlwI GGATC 4 cut(s) 106, 106, 119, 166
Ama87I CYCGRG 3 cut(s) 16, 175, 275
AoxI GGCC 1 cut(s) 135
ApeKI GCWGC 2 cut(s) 180, 240
AspLEI GCGC 1 cut(s) 288
AspS9I GGNCC 3 cut(s) 52, 58, 64
AsuC2I CCSGG 3 cut(s) 10, 120, 214
AsuNHI GCTAGC 1 cut(s) 74
AvaI CYCGRG 3 cut(s) 16, 175, 275
AvaII GGWCC 3 cut(s) 52, 58, 64
BalI TGGCCA 1 cut(s) 137
BamHI GGATCC 1 cut(s) 111
BanI GGYRCC 1 cut(s) 234
BbsI GAAGAC 1 cut(s) 295
Bbv12I GWGCWC 1 cut(s) 212
BbvI GCAGC 2 cut(s) 167, 252
BccI CCATC 1 cut(s) 123
BceAI ACGGC 3 cut(s) 78, 100, 172
BciT130I CCWGG 2 cut(s) 56, 62
BcnI CCSGG 3 cut(s) 10, 120, 214
BcoDI GTCTC 2 cut(s) 111, 335
BfaI CTAG 1 cut(s) 75
BfmI CTRYAG 2 cut(s) 296, 322
BglI GCCNNNNNGGC 1 cut(s) 84
BisI GCNGC 3 cut(s) 181, 238, 241
BlsI GCNGC 3 cut(s) 182, 239, 242
Bme1390I CCNGG 5 cut(s) 10, 56, 62, 120, 214
Bme18I GGWCC 3 cut(s) 52, 58, 64
BmeRI GACNNNNNGTC 1 cut(s) 193
BmeT110I CYCGRG 3 cut(s) 16, 175, 275
BmgT120I GGNCC 3 cut(s) 52, 58, 64
BmiI GGNNCC 5 cut(s) 14, 88, 113, 218, 236
BmrFI CCNGG 5 cut(s) 10, 56, 62, 120, 214
BmtI GCTAGC 1 cut(s) 78
BoxI GACNNNNGTC 1 cut(s) 324
BpiI GAAGAC 1 cut(s) 295
BpuMI CCSGG 3 cut(s) 10, 120, 214
BsaHI GRCGYC 1 cut(s) 246
BsaJI CCNNGG 1 cut(s) 94
BsaXI ACNNNNNCTCC 2 cut(s) 191, 221
Bsc4I CCNNNNNNNGG 2 cut(s) 61, 144
Bse118I RCCGGY 1 cut(s) 228
BseBI CCWGG 2 cut(s) 56, 62
BseDI CCNNGG 1 cut(s) 94
BseGI GGATG 1 cut(s) 115
BseLI CCNNNNNNNGG 2 cut(s) 61, 144
BseMII CTCAG 1 cut(s) 93
BseXI GCAGC 2 cut(s) 167, 252
Bsh1236I CGCG 1 cut(s) 126
BshFI GGCC 1 cut(s) 137
BshNI GGYRCC 1 cut(s) 234
BsiHKAI GWGCWC 1 cut(s) 212
BsiHKCI CYCGRG 3 cut(s) 16, 175, 275
BsiSI CCGG 4 cut(s) 10, 119, 214, 229
BslI CCNNNNNNNGG 2 cut(s) 61, 144
BsmAI GTCTC 2 cut(s) 111, 335
BsmBI CGTCTC 1 cut(s) 335
BsnI GGCC 1 cut(s) 137
BsoBI CYCGRG 3 cut(s) 16, 175, 275
Bsp1286I GDGCHC 1 cut(s) 212
Bsp143I GATC 3 cut(s) 98, 111, 171
Bsp68I TCGCGA 1 cut(s) 126
BspACI CCGC 1 cut(s) 238
BspANI GGCC 1 cut(s) 137
BspCNI CTCAG 1 cut(s) 94
BspFNI CGCG 1 cut(s) 126
BspHI TCATGA 1 cut(s) 343
BspLI GGNNCC 5 cut(s) 14, 88, 113, 218, 236
BspOI GCTAGC 1 cut(s) 78
BspPI GGATC 4 cut(s) 106, 106, 119, 166
BspT107I GGYRCC 1 cut(s) 234
BsrFI RCCGGY 1 cut(s) 228
BssAI RCCGGY 1 cut(s) 228
BssECI CCNNGG 1 cut(s) 94
BssMI GATC 3 cut(s) 98, 111, 171
BssNI GRCGYC 1 cut(s) 246
Bst2UI CCWGG 2 cut(s) 56, 62
Bst4CI ACNGT 2 cut(s) 207, 326
BstACI GRCGYC 1 cut(s) 246
BstC8I GCNNGC 2 cut(s) 46, 76
BstDEI CTNAG 3 cut(s) 70, 102, 354
BstDSI CCRYGG 1 cut(s) 94
BstF5I GGATG 1 cut(s) 115
BstFNI CGCG 1 cut(s) 126
BstHHI GCGC 1 cut(s) 288
BstKTI GATC 3 cut(s) 101, 114, 174
BstMAI GTCTC 2 cut(s) 111, 335
BstMBI GATC 3 cut(s) 98, 111, 171
BstMWI GCNNNNNNNGC 2 cut(s) 84, 234
BstNI CCWGG 2 cut(s) 56, 62
BstNSI RCATGY 2 cut(s) 193, 262
BstPAI GACNNNNGTC 1 cut(s) 324
BstSCI CCNGG 5 cut(s) 8, 54, 60, 118, 212
BstSFI CTRYAG 2 cut(s) 296, 322
BstUI CGCG 1 cut(s) 126
BstV1I GCAGC 2 cut(s) 167, 252
BstV2I GAAGAC 1 cut(s) 295
BstX2I RGATCY 3 cut(s) 98, 111, 171
BstYI RGATCY 3 cut(s) 98, 111, 171
BsuRI GGCC 1 cut(s) 137
BtgI CCRYGG 1 cut(s) 94
BtsCI GGATG 1 cut(s) 115
BtsIMutI CAGTG 1 cut(s) 212
BtuMI TCGCGA 1 cut(s) 126
Cac8I GCNNGC 2 cut(s) 46, 76
CciI TCATGA 1 cut(s) 343
CfoI GCGC 1 cut(s) 288
Cfr10I RCCGGY 1 cut(s) 228
Cfr13I GGNCC 3 cut(s) 52, 58, 64
CviAII CATG 3 cut(s) 190, 259, 344
CviJI RGCY 9 cut(s) 48, 74, 78, 87, 137, 180, 274, 281, 353
CviKI_1 RGCY 9 cut(s) 48, 74, 78, 87, 137, 180, 274, 281, 353
DdeI CTNAG 3 cut(s) 70, 102, 354
DpnI GATC 3 cut(s) 100, 113, 173
DpnII GATC 3 cut(s) 98, 111, 171
DriI GACNNNNNGTC 1 cut(s) 193
EaeI YGGCCR 1 cut(s) 135
Eam1105I GACNNNNNGTC 1 cut(s) 193
Eco47I GGWCC 3 cut(s) 52, 58, 64
Eco88I CYCGRG 3 cut(s) 16, 175, 275
EcoRII CCWGG 2 cut(s) 54, 60
Esp3I CGTCTC 1 cut(s) 335
FaeI CATG 3 cut(s) 193, 262, 347
FaiI YATR 4 cut(s) 36, 191, 260, 345
FatI CATG 3 cut(s) 189, 258, 343
Fnu4HI GCNGC 3 cut(s) 181, 238, 241
FokI GGATG 1 cut(s) 102
Fsp4HI GCNGC 3 cut(s) 181, 238, 241
FspBI CTAG 1 cut(s) 75
GlaI GCGC 1 cut(s) 287
GluI GCNGC 3 cut(s) 181, 238, 241
HaeIII GGCC 1 cut(s) 137
HapII CCGG 4 cut(s) 10, 119, 214, 229
HhaI GCGC 1 cut(s) 288
Hin1I GRCGYC 1 cut(s) 246
Hin1II CATG 3 cut(s) 193, 262, 347
Hin6I GCGC 1 cut(s) 286
HinP1I GCGC 1 cut(s) 286
HindIII AAGCTT 1 cut(s) 351
HinfI GANTC 5 cut(s) 19, 25, 31, 104, 200
HpaII CCGG 4 cut(s) 10, 119, 214, 229
Hpy188I TCNGA 6 cut(s) 24, 30, 103, 111, 165, 199
Hpy188III TCNNGA 4 cut(s) 16, 125, 175, 344
Hpy99I CGWCG 2 cut(s) 199, 248
HpyCH4III ACNGT 2 cut(s) 207, 326
HpyCH4IV ACGT 1 cut(s) 246
HpyCH4V TGCA 2 cut(s) 183, 312
HpyF10VI GCNNNNNNNGC 2 cut(s) 84, 234
HpyF3I CTNAG 3 cut(s) 70, 102, 354
HpySE526I ACGT 1 cut(s) 246
Hsp92I GRCGYC 1 cut(s) 246
Hsp92II CATG 3 cut(s) 193, 262, 347
HspAI GCGC 1 cut(s) 286
Kzo9I GATC 3 cut(s) 98, 111, 171
LmnI GCTCC 2 cut(s) 92, 215
Lsp1109I GCAGC 2 cut(s) 167, 252
MaeI CTAG 1 cut(s) 75
MaeII ACGT 1 cut(s) 246
MaeIII GTNAC 1 cut(s) 201
MalI GATC 3 cut(s) 100, 113, 173
MboI GATC 3 cut(s) 98, 111, 171
MboII GAAGA 1 cut(s) 295
MflI RGATCY 3 cut(s) 98, 111, 171
MhlI GDGCHC 1 cut(s) 212
MlsI TGGCCA 1 cut(s) 137
MluCI AATT 1 cut(s) 315
MluNI TGGCCA 1 cut(s) 137
MlyI GAGTC 5 cut(s) 28, 34, 40, 113, 209
MmeI TCCRAC 1 cut(s) 177
MnlI CCTC 5 cut(s) 77, 89, 141, 260, 271
Mox20I TGGCCA 1 cut(s) 137
MscI TGGCCA 1 cut(s) 137
Msp20I TGGCCA 1 cut(s) 137
MspI CCGG 4 cut(s) 10, 119, 214, 229
MspR9I CCNGG 5 cut(s) 10, 56, 62, 120, 214
MvaI CCWGG 2 cut(s) 56, 62
MvnI CGCG 1 cut(s) 126
MwoI GCNNNNNNNGC 2 cut(s) 84, 234
NciI CCSGG 3 cut(s) 10, 120, 214
NdeII GATC 3 cut(s) 98, 111, 171
NheI GCTAGC 1 cut(s) 74
NlaIII CATG 3 cut(s) 193, 262, 347
NlaIV GGNNCC 5 cut(s) 14, 88, 113, 218, 236
NmuCI GTSAC 1 cut(s) 201
NruI TCGCGA 1 cut(s) 126
NspI RCATGY 2 cut(s) 193, 262
PaeR7I CTCGAG 1 cut(s) 275
PagI TCATGA 1 cut(s) 343
PciI ACATGT 2 cut(s) 189, 258
PcsI WCGNNNNNNNCGW 1 cut(s) 252
PfoI TCCNGGA 1 cut(s) 212
PkrI GCNGC 3 cut(s) 182, 239, 242
PleI GAGTC 5 cut(s) 27, 33, 39, 112, 208
PpsI GAGTC 5 cut(s) 27, 33, 39, 112, 208
PscI ACATGT 2 cut(s) 189, 258
PshAI GACNNNNGTC 1 cut(s) 324
Psp6I CCWGG 2 cut(s) 54, 60
PspGI CCWGG 2 cut(s) 54, 60
PspN4I GGNNCC 5 cut(s) 14, 88, 113, 218, 236
PspPI GGNCC 3 cut(s) 52, 58, 64
PspXI VCTCGAGB 1 cut(s) 275
PsuI RGATCY 3 cut(s) 98, 111, 171
RruI TCGCGA 1 cut(s) 126
SatI GCNGC 3 cut(s) 181, 238, 241
Sau3AI GATC 3 cut(s) 98, 111, 171
Sau96I GGNCC 3 cut(s) 52, 58, 64
SchI GAGTC 5 cut(s) 28, 34, 40, 113, 209
ScrFI CCNGG 5 cut(s) 10, 56, 62, 120, 214
SduI GDGCHC 1 cut(s) 212
SetI ASST 8 cut(s) 50, 76, 132, 182, 249, 276, 303, 355
SfcI CTRYAG 2 cut(s) 296, 322
Sfr274I CTCGAG 1 cut(s) 275
SinI GGWCC 3 cut(s) 52, 58, 64
SlaI CTCGAG 1 cut(s) 275
SmlI CTYRAG 1 cut(s) 275
SmoI CTYRAG 1 cut(s) 275
Sse9I AATT 1 cut(s) 315
SsiI CCGC 1 cut(s) 238
SspMI CTAG 1 cut(s) 75
StyD4I CCNGG 5 cut(s) 8, 54, 60, 118, 212
TaaI ACNGT 2 cut(s) 207, 326
TaiI ACGT 1 cut(s) 249
TaqI TCGA 1 cut(s) 276
TasI AATT 1 cut(s) 315
TauI GCSGC 1 cut(s) 240
TscAI CASTG 1 cut(s) 212
TseFI GTSAC 1 cut(s) 201
TseI GCWGC 2 cut(s) 180, 240
Tsp45I GTSAC 1 cut(s) 201
TspRI CASTG 1 cut(s) 212
VpaK11BI GGWCC 3 cut(s) 52, 58, 64
XceI RCATGY 2 cut(s) 193, 262
XcmI CCANNNNNNNNNTGG 1 cut(s) 228
XhoI CTCGAG 1 cut(s) 275
XspI CTAG 1 cut(s) 75
ZraI GACGTC 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.