Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0011605

Physical Location & Seq

Genomic Coordinates Forward (+)

8966698 .. 8967330

Gene Structure 633 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031877

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGCGGCAACCACCACCGCAAAGACTTCGACTTCAACTCCCAAACTCAAGAGCTTCGCCCCAGTCCTCCTGCTCCTCCTCATCGTCGTCTTATCAACCTTCTCCGGCGGATCTGCGAATCGGATCCGGTTGGTTAAGAATCAGATCCCCAGCTGCTGCGACATGTCGTCGGAAGCGCAGTGCTCCCAGAACCCCAAGTGCCGGTGGTGCCGCAGCGAGTCCCTGGACGACATGTGCTTCCCCAAGTCCGAGGCTCTGCGATTGCCCCGTCAGCTAATTTGTGATGAATGTGCTTCAGTTTGTGCAATGAATTCAACTGATTTTTACTTTCATGGCGTAAAGTTTGTGGCACATTGTGCAAATTTTGTTGCTACAATGTATGTGAGAGTTAATGAATTGTTGTTAAAGAGTGTGATTGCTGATCTTGCCTGGCTAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

147

Amino Acids

16.11

Weight (kDa)

8.56

Isoelectric Point (pI)

44.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011605)

Species	Orthologous Gene IDs
prunus_persica	Prupe.4G068400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0011991
rosa_laevigata	RLG00000001485 RLG00000003619 RLG00000031877
rosa_multiflora	Rmu_sc0004594.1_g000001 Rmu_sc0008676.1_g000020
rosa_roxburghii	Rroxscaffold_1G00064600
rosa_rugosa	Rorug03G0201200 Rorug04G0460300 Rorug05G0349100 Rorug05G0418600 Rorug06G0268400
rosa_samantha	Rh5AG092200 Rh5BG088000 Rh5CG101900 Rh5DG088600 Rh6BG151900 Rh6DG136100
rosa_wichuraiana	Rw5G008050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	207
AciI	CCGC	4 cut(s)	5, 18, 108, 211
AclWI	GGATC	4 cut(s)	118, 118, 131, 139
AcsI	RAATTY	2 cut(s)	310, 361
AcuI	CTGAAG	1 cut(s)	279
AdeI	CACNNNGTG	1 cut(s)	356
AfiI	CCNNNNNNNGG	1 cut(s)	201
AflIII	ACRYGT	2 cut(s)	162, 231
AgsI	TTSAA	2 cut(s)	36, 315
AhdI	GACNNNNNGTC	1 cut(s)	166
AjnI	CCWGG	2 cut(s)	222, 428
AluBI	AGCT	3 cut(s)	54, 153, 274
AluI	AGCT	3 cut(s)	54, 153, 274
Alw21I	GWGCWC	1 cut(s)	185
AlwI	GGATC	4 cut(s)	118, 118, 131, 139
AlwNI	CAGNNNCTG	1 cut(s)	156
ApeKI	GCWGC	3 cut(s)	153, 156, 213
ApoI	RAATTY	2 cut(s)	310, 361
AspLEI	GCGC	1 cut(s)	178
BamHI	GGATCC	1 cut(s)	123
BanI	GGYRCC	1 cut(s)	207
Bbv12I	GWGCWC	1 cut(s)	185
BbvI	GCAGC	3 cut(s)	140, 143, 225
BcgI	CGANNNNNNTGC	2 cut(s)	9, 43
BciT130I	CCWGG	2 cut(s)	224, 430
BisI	GCNGC	5 cut(s)	6, 154, 157, 211, 214
BlsI	GCNGC	5 cut(s)	7, 155, 158, 212, 215
Bme1390I	CCNGG	2 cut(s)	224, 430
BmeRI	GACNNNNNGTC	1 cut(s)	166
BmiI	GGNNCC	2 cut(s)	125, 209
BmrFI	CCNGG	2 cut(s)	224, 430
BmrI	ACTGGG	1 cut(s)	56
BmuI	ACTGGG	1 cut(s)	56
BpuEI	CTTGAG	1 cut(s)	32
BsaJI	CCNNGG	2 cut(s)	222, 249
BsaWI	WCCGGW	1 cut(s)	126
BsaXI	ACNNNNNCTCC	2 cut(s)	22, 52
Bsc4I	CCNNNNNNNGG	1 cut(s)	201
Bse118I	RCCGGY	1 cut(s)	201
Bse1I	ACTGG	1 cut(s)	62
Bse3DI	GCAATG	1 cut(s)	312
BseBI	CCWGG	2 cut(s)	224, 430
BseDI	CCNNGG	2 cut(s)	222, 249
BseLI	CCNNNNNNNGG	1 cut(s)	201
BseMI	GCAATG	1 cut(s)	312
BseNI	ACTGG	1 cut(s)	62
BseRI	GAGGAG	2 cut(s)	65, 68
BseXI	GCAGC	3 cut(s)	140, 143, 225
BseYI	CCCAGC	1 cut(s)	149
BshNI	GGYRCC	1 cut(s)	207
BsiHKAI	GWGCWC	1 cut(s)	185
BsiSI	CCGG	3 cut(s)	105, 127, 202
BslFI	GGGAC	1 cut(s)	205
BslI	CCNNNNNNNGG	1 cut(s)	201
BsmFI	GGGAC	1 cut(s)	205
Bsp1286I	GDGCHC	1 cut(s)	185
Bsp143I	GATC	4 cut(s)	110, 123, 144, 421
BspACI	CCGC	4 cut(s)	5, 18, 108, 211
BspLI	GGNNCC	2 cut(s)	125, 209
BspPI	GGATC	4 cut(s)	118, 118, 131, 139
BspT107I	GGYRCC	1 cut(s)	207
BsrDI	GCAATG	1 cut(s)	312
BsrFI	RCCGGY	1 cut(s)	201
BsrI	ACTGG	1 cut(s)	62
BssAI	RCCGGY	1 cut(s)	201
BssECI	CCNNGG	2 cut(s)	222, 249
BssMI	GATC	4 cut(s)	110, 123, 144, 421
Bst2UI	CCWGG	2 cut(s)	224, 430
BstAPI	GCANNNNNTGC	1 cut(s)	356
BstHHI	GCGC	1 cut(s)	178
BstKTI	GATC	4 cut(s)	113, 126, 147, 424
BstMBI	GATC	4 cut(s)	110, 123, 144, 421
BstMWI	GCNNNNNNNGC	4 cut(s)	207, 271, 356, 425
BstNI	CCWGG	2 cut(s)	224, 430
BstNSI	RCATGY	2 cut(s)	166, 235
BstSCI	CCNGG	2 cut(s)	222, 428
BstV1I	GCAGC	3 cut(s)	140, 143, 225
BstX2I	RGATCY	3 cut(s)	110, 123, 144
BstYI	RGATCY	3 cut(s)	110, 123, 144
BtsI	GCAGTG	1 cut(s)	185
BtsIMutI	CAGTG	1 cut(s)	185
CaiI	CAGNNNCTG	1 cut(s)	156
CfoI	GCGC	1 cut(s)	178
Cfr10I	RCCGGY	1 cut(s)	201
CviAII	CATG	3 cut(s)	163, 232, 332
CviJI	RGCY	5 cut(s)	54, 153, 254, 274, 433
CviKI_1	RGCY	5 cut(s)	54, 153, 254, 274, 433
DpnI	GATC	4 cut(s)	112, 125, 146, 423
DpnII	GATC	4 cut(s)	110, 123, 144, 421
DraIII	CACNNNGTG	1 cut(s)	356
DriI	GACNNNNNGTC	1 cut(s)	166
Eam1105I	GACNNNNNGTC	1 cut(s)	166
EciI	GGCGGA	1 cut(s)	123
Eco57I	CTGAAG	1 cut(s)	279
EcoRI	GAATTC	1 cut(s)	310
EcoRII	CCWGG	2 cut(s)	222, 428
FaeI	CATG	3 cut(s)	166, 235, 335
FaiI	YATR	4 cut(s)	164, 233, 333, 381
FaqI	GGGAC	1 cut(s)	205
FatI	CATG	3 cut(s)	162, 231, 331
Fnu4HI	GCNGC	5 cut(s)	6, 154, 157, 211, 214
Fsp4HI	GCNGC	5 cut(s)	6, 154, 157, 211, 214
GlaI	GCGC	1 cut(s)	177
GluI	GCNGC	5 cut(s)	6, 154, 157, 211, 214
GsaI	CCCAGC	1 cut(s)	153
HapII	CCGG	3 cut(s)	105, 127, 202
HhaI	GCGC	1 cut(s)	178
Hin1II	CATG	3 cut(s)	166, 235, 335
Hin6I	GCGC	1 cut(s)	176
HinP1I	GCGC	1 cut(s)	176
HinfI	GANTC	3 cut(s)	118, 139, 218
HpaII	CCGG	3 cut(s)	105, 127, 202
Hpy188I	TCNGA	4 cut(s)	123, 144, 172, 250
Hpy188III	TCNNGA	1 cut(s)	49
Hpy99I	CGWCG	2 cut(s)	89, 172
HpyAV	CCTTC	1 cut(s)	109
HpyCH4V	TGCA	2 cut(s)	305, 359
HpyF10VI	GCNNNNNNNGC	4 cut(s)	207, 271, 356, 425
Hsp92II	CATG	3 cut(s)	166, 235, 335
HspAI	GCGC	1 cut(s)	176
Kzo9I	GATC	4 cut(s)	110, 123, 144, 421
LmnI	GCTCC	2 cut(s)	78, 188
Lsp1109I	GCAGC	3 cut(s)	140, 143, 225
MalI	GATC	4 cut(s)	112, 125, 146, 423
MboI	GATC	4 cut(s)	110, 123, 144, 421
MflI	RGATCY	3 cut(s)	110, 123, 144
MhlI	GDGCHC	1 cut(s)	185
MluCI	AATT	5 cut(s)	276, 310, 361, 395, 435
MlyI	GAGTC	1 cut(s)	227
MmeI	TCCRAC	1 cut(s)	150
MnlI	CCTC	4 cut(s)	77, 86, 89, 244
MseI	TTAA	3 cut(s)	135, 390, 404
MspA1I	CMGCKG	1 cut(s)	153
MspI	CCGG	3 cut(s)	105, 127, 202
MspR9I	CCNGG	2 cut(s)	224, 430
MvaI	CCWGG	2 cut(s)	224, 430
MwoI	GCNNNNNNNGC	4 cut(s)	207, 271, 356, 425
NdeII	GATC	4 cut(s)	110, 123, 144, 421
NlaIII	CATG	3 cut(s)	166, 235, 335
NlaIV	GGNNCC	2 cut(s)	125, 209
NspI	RCATGY	2 cut(s)	166, 235
PciI	ACATGT	2 cut(s)	162, 231
PfeI	GAWTC	2 cut(s)	118, 139
PkrI	GCNGC	5 cut(s)	7, 155, 158, 212, 215
PleI	GAGTC	1 cut(s)	226
PpsI	GAGTC	1 cut(s)	226
PscI	ACATGT	2 cut(s)	162, 231
Psp6I	CCWGG	2 cut(s)	222, 428
PspFI	CCCAGC	1 cut(s)	149
PspGI	CCWGG	2 cut(s)	222, 428
PspN4I	GGNNCC	2 cut(s)	125, 209
PstNI	CAGNNNCTG	1 cut(s)	156
PsuI	RGATCY	3 cut(s)	110, 123, 144
PvuII	CAGCTG	1 cut(s)	153
SaqAI	TTAA	3 cut(s)	135, 390, 404
SatI	GCNGC	5 cut(s)	6, 154, 157, 211, 214
Sau3AI	GATC	4 cut(s)	110, 123, 144, 421
SchI	GAGTC	1 cut(s)	227
ScrFI	CCNGG	2 cut(s)	224, 430
SduI	GDGCHC	1 cut(s)	185
SetI	ASST	4 cut(s)	56, 101, 155, 276
SmlI	CTYRAG	1 cut(s)	47
SmoI	CTYRAG	1 cut(s)	47
Sse9I	AATT	5 cut(s)	276, 310, 361, 395, 435
SsiI	CCGC	4 cut(s)	5, 18, 108, 211
StyD4I	CCNGG	2 cut(s)	222, 428
TaqI	TCGA	1 cut(s)	29
TasI	AATT	5 cut(s)	276, 310, 361, 395, 435
TauI	GCSGC	2 cut(s)	8, 213
TfiI	GAWTC	2 cut(s)	118, 139
Tru1I	TTAA	3 cut(s)	135, 390, 404
Tru9I	TTAA	3 cut(s)	135, 390, 404
TscAI	CASTG	1 cut(s)	185
TseI	GCWGC	3 cut(s)	153, 156, 213
TspDTI	ATGAA	4 cut(s)	300, 320, 323, 408
TspRI	CASTG	1 cut(s)	185
XapI	RAATTY	2 cut(s)	310, 361
XceI	RCATGY	2 cut(s)	166, 235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.