Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0011605

Physical Location & Seq

Genomic Coordinates Forward (+)

7615404 .. 7615806

Gene Structure 403 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG088000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGCGGCAACCACCACCGCCAAGACTTCCACTTCAACTCCCAAACTCAAGAGCTTCGCCCCAGTCCTCCTCCTCCTCCTCCTCCTCTTATCAACCTTCTCCGGCGGATCTGCGAATCGGATCCGGTTGGGTAAGAATCAGATCCCCAGCTGCTGCGACATGTCGTCGGAAGCGCAGTGCTCCCAGAACCCCAAGTGCCGGTGGTGCCGCAGCGAGTCCCTCGACGACTTGTGCTTCCCCAAGTCCGAGGCTCTGCGATTGCCCCCTCAGGTCTTCACTTGCAAATTGATCCGATTCAGCCAAAAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

103

Amino Acids

11.36

Weight (kDa)

9.46

Isoelectric Point (pI)

54.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011605)

Species	Orthologous Gene IDs
prunus_persica	Prupe.4G068400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0011991
rosa_laevigata	RLG00000001485 RLG00000003619 RLG00000031877
rosa_multiflora	Rmu_sc0004594.1_g000001 Rmu_sc0008676.1_g000020
rosa_roxburghii	Rroxscaffold_1G00064600
rosa_rugosa	Rorug03G0201200 Rorug04G0460300 Rorug05G0349100 Rorug05G0418600 Rorug06G0268400
rosa_samantha	Rh5AG092200 Rh5BG088000 Rh5CG101900 Rh5DG088600 Rh6BG151900 Rh6DG136100
rosa_wichuraiana	Rw5G008050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	204
AciI	CCGC	4 cut(s)	5, 18, 105, 208
AclWI	GGATC	5 cut(s)	115, 115, 128, 136, 283
AcsI	RAATTY	1 cut(s)	305
AfiI	CCNNNNNNNGG	1 cut(s)	198
AflIII	ACRYGT	1 cut(s)	159
AgsI	TTSAA	1 cut(s)	36
AhdI	GACNNNNNGTC	1 cut(s)	163
AluBI	AGCT	2 cut(s)	54, 150
AluI	AGCT	2 cut(s)	54, 150
Alw21I	GWGCWC	1 cut(s)	182
AlwI	GGATC	5 cut(s)	115, 115, 128, 136, 283
AlwNI	CAGNNNCTG	1 cut(s)	153
ApeKI	GCWGC	3 cut(s)	150, 153, 210
ApoI	RAATTY	1 cut(s)	305
AspLEI	GCGC	1 cut(s)	175
AxyI	CCTNAGG	1 cut(s)	267
BamHI	GGATCC	1 cut(s)	120
BanI	GGYRCC	1 cut(s)	204
BbsI	GAAGAC	1 cut(s)	265
Bbv12I	GWGCWC	1 cut(s)	182
BbvI	GCAGC	3 cut(s)	137, 140, 222
BisI	GCNGC	5 cut(s)	6, 151, 154, 208, 211
BlsI	GCNGC	5 cut(s)	7, 152, 155, 209, 212
BmeRI	GACNNNNNGTC	1 cut(s)	163
BmiI	GGNNCC	2 cut(s)	122, 206
BmrI	ACTGGG	1 cut(s)	56
BmuI	ACTGGG	1 cut(s)	56
BpiI	GAAGAC	1 cut(s)	265
BpuEI	CTTGAG	1 cut(s)	32
BsaJI	CCNNGG	1 cut(s)	246
BsaWI	WCCGGW	1 cut(s)	123
BsaXI	ACNNNNNCTCC	2 cut(s)	22, 52
Bsc4I	CCNNNNNNNGG	1 cut(s)	198
Bse118I	RCCGGY	1 cut(s)	198
Bse1I	ACTGG	1 cut(s)	62
Bse21I	CCTNAGG	1 cut(s)	267
BseDI	CCNNGG	1 cut(s)	246
BseLI	CCNNNNNNNGG	1 cut(s)	198
BseMII	CTCAG	1 cut(s)	281
BseNI	ACTGG	1 cut(s)	62
BseRI	GAGGAG	6 cut(s)	59, 62, 65, 68, 71, 74
BseXI	GCAGC	3 cut(s)	137, 140, 222
BseYI	CCCAGC	1 cut(s)	146
BshNI	GGYRCC	1 cut(s)	204
BsiHKAI	GWGCWC	1 cut(s)	182
BsiSI	CCGG	3 cut(s)	102, 124, 199
BslFI	GGGAC	1 cut(s)	202
BslI	CCNNNNNNNGG	1 cut(s)	198
BsmFI	GGGAC	1 cut(s)	202
Bsp1286I	GDGCHC	1 cut(s)	182
Bsp143I	GATC	4 cut(s)	107, 120, 141, 288
BspACI	CCGC	4 cut(s)	5, 18, 105, 208
BspCNI	CTCAG	1 cut(s)	280
BspLI	GGNNCC	2 cut(s)	122, 206
BspPI	GGATC	5 cut(s)	115, 115, 128, 136, 283
BspT107I	GGYRCC	1 cut(s)	204
BsrFI	RCCGGY	1 cut(s)	198
BsrI	ACTGG	1 cut(s)	62
BssAI	RCCGGY	1 cut(s)	198
BssECI	CCNNGG	1 cut(s)	246
BssMI	GATC	4 cut(s)	107, 120, 141, 288
BstDEI	CTNAG	1 cut(s)	267
BstHHI	GCGC	1 cut(s)	175
BstKTI	GATC	4 cut(s)	110, 123, 144, 291
BstMBI	GATC	4 cut(s)	107, 120, 141, 288
BstMWI	GCNNNNNNNGC	1 cut(s)	204
BstNSI	RCATGY	1 cut(s)	163
BstV1I	GCAGC	3 cut(s)	137, 140, 222
BstV2I	GAAGAC	1 cut(s)	265
BstX2I	RGATCY	3 cut(s)	107, 120, 141
BstYI	RGATCY	3 cut(s)	107, 120, 141
Bsu36I	CCTNAGG	1 cut(s)	267
BtsI	GCAGTG	1 cut(s)	182
BtsIMutI	CAGTG	1 cut(s)	182
CaiI	CAGNNNCTG	1 cut(s)	153
CfoI	GCGC	1 cut(s)	175
Cfr10I	RCCGGY	1 cut(s)	198
CviAII	CATG	1 cut(s)	160
CviJI	RGCY	4 cut(s)	54, 150, 251, 300
CviKI_1	RGCY	4 cut(s)	54, 150, 251, 300
DdeI	CTNAG	1 cut(s)	267
DpnI	GATC	4 cut(s)	109, 122, 143, 290
DpnII	GATC	4 cut(s)	107, 120, 141, 288
DriI	GACNNNNNGTC	1 cut(s)	163
Eam1105I	GACNNNNNGTC	1 cut(s)	163
EciI	GGCGGA	1 cut(s)	120
Eco81I	CCTNAGG	1 cut(s)	267
FaeI	CATG	1 cut(s)	163
FaiI	YATR	1 cut(s)	161
FaqI	GGGAC	1 cut(s)	202
FatI	CATG	1 cut(s)	159
Fnu4HI	GCNGC	5 cut(s)	6, 151, 154, 208, 211
Fsp4HI	GCNGC	5 cut(s)	6, 151, 154, 208, 211
GlaI	GCGC	1 cut(s)	174
GluI	GCNGC	5 cut(s)	6, 151, 154, 208, 211
GsaI	CCCAGC	1 cut(s)	150
HapII	CCGG	3 cut(s)	102, 124, 199
HhaI	GCGC	1 cut(s)	175
Hin1II	CATG	1 cut(s)	163
Hin6I	GCGC	1 cut(s)	173
HinP1I	GCGC	1 cut(s)	173
HinfI	GANTC	4 cut(s)	115, 136, 215, 294
HpaII	CCGG	3 cut(s)	102, 124, 199
Hpy188I	TCNGA	5 cut(s)	120, 141, 169, 247, 293
Hpy188III	TCNNGA	1 cut(s)	49
Hpy99I	CGWCG	2 cut(s)	169, 227
HpyAV	CCTTC	1 cut(s)	106
HpyCH4V	TGCA	1 cut(s)	282
HpyF10VI	GCNNNNNNNGC	1 cut(s)	204
HpyF3I	CTNAG	1 cut(s)	267
Hsp92II	CATG	1 cut(s)	163
HspAI	GCGC	1 cut(s)	173
Kzo9I	GATC	4 cut(s)	107, 120, 141, 288
LmnI	GCTCC	1 cut(s)	185
LpnPI	CCDG	7 cut(s)	75, 115, 137, 160, 197, 212, 254
Lsp1109I	GCAGC	3 cut(s)	137, 140, 222
MalI	GATC	4 cut(s)	109, 122, 143, 290
MboI	GATC	4 cut(s)	107, 120, 141, 288
MboII	GAAGA	1 cut(s)	265
MflI	RGATCY	3 cut(s)	107, 120, 141
MhlI	GDGCHC	1 cut(s)	182
MluCI	AATT	2 cut(s)	284, 305
MlyI	GAGTC	1 cut(s)	224
MmeI	TCCRAC	1 cut(s)	147
MspA1I	CMGCKG	1 cut(s)	150
MspI	CCGG	3 cut(s)	102, 124, 199
MwoI	GCNNNNNNNGC	1 cut(s)	204
NdeII	GATC	4 cut(s)	107, 120, 141, 288
NlaIII	CATG	1 cut(s)	163
NlaIV	GGNNCC	2 cut(s)	122, 206
NspI	RCATGY	1 cut(s)	163
PciI	ACATGT	1 cut(s)	159
PfeI	GAWTC	3 cut(s)	115, 136, 294
PkrI	GCNGC	5 cut(s)	7, 152, 155, 209, 212
PleI	GAGTC	1 cut(s)	223
PpsI	GAGTC	1 cut(s)	223
PscI	ACATGT	1 cut(s)	159
PspFI	CCCAGC	1 cut(s)	146
PspN4I	GGNNCC	2 cut(s)	122, 206
PstNI	CAGNNNCTG	1 cut(s)	153
PsuI	RGATCY	3 cut(s)	107, 120, 141
PvuII	CAGCTG	1 cut(s)	150
SatI	GCNGC	5 cut(s)	6, 151, 154, 208, 211
Sau3AI	GATC	4 cut(s)	107, 120, 141, 288
SchI	GAGTC	1 cut(s)	224
SduI	GDGCHC	1 cut(s)	182
SetI	ASST	4 cut(s)	56, 98, 152, 273
SmlI	CTYRAG	1 cut(s)	47
SmoI	CTYRAG	1 cut(s)	47
Sse9I	AATT	2 cut(s)	284, 305
SsiI	CCGC	4 cut(s)	5, 18, 105, 208
TaqI	TCGA	1 cut(s)	222
TasI	AATT	2 cut(s)	284, 305
TauI	GCSGC	2 cut(s)	8, 210
TfiI	GAWTC	3 cut(s)	115, 136, 294
TscAI	CASTG	1 cut(s)	182
TseI	GCWGC	3 cut(s)	150, 153, 210
TspRI	CASTG	1 cut(s)	182
XapI	RAATTY	1 cut(s)	305
XceI	RCATGY	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.