Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0011605

Physical Location & Seq

Genomic Coordinates Reverse (-)

24397494 .. 24398236

Gene Structure 743 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG151900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGCGGCAACCACCACCGCCAAGACTTCGGCTTCAACTCCCAAACTCAAGAGCTTCGCCCCAGTCCTCCTGCTCGTCCTCATCCTCGTCTTATTAACCATCTCCGGCGGATCTACGAATCGGATCCGGTTGGTTAAGAATCAGATCCCCAACTACTGCGACATGTCGTTGGAAGCGCAGTGCTCCCAGAACCCCAAGTGCCAGTGGTGCCGCAGCGAGTCCCTGGACGACATCTGCTTCCCCAAGTCCGAGGCTTTGCGATTGCCCCCTCAGGGAAGAGAACGACGACTCGGCGGCTCCAGCGGCGGCGAAGGCGACGTCGTACTCGGGGCTGATGAGGGCACCGTCGCTTCCGATGGAGACGGAGGAGGAGTGGAGGAAGATGAAGGAGTTGCAGACGCTGACGCGATTAGTGGCGAAGCGGAGGAGGTCGGAGAAGCAGAGGAGCAGCAGCAGCAGCAAGGAGGAAGAGCTGGCATTAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

161

Amino Acids

16.79

Weight (kDa)

4.41

Isoelectric Point (pI)

45.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011605)

Species	Orthologous Gene IDs
prunus_persica	Prupe.4G068400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0011991
rosa_laevigata	RLG00000001485 RLG00000003619 RLG00000031877
rosa_multiflora	Rmu_sc0004594.1_g000001 Rmu_sc0008676.1_g000020
rosa_roxburghii	Rroxscaffold_1G00064600
rosa_rugosa	Rorug03G0201200 Rorug04G0460300 Rorug05G0349100 Rorug05G0418600 Rorug06G0268400
rosa_samantha	Rh5AG092200 Rh5BG088000 Rh5CG101900 Rh5DG088600 Rh6BG151900 Rh6DG136100
rosa_wichuraiana	Rw5G008050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	321
AccB1I	GGYRCC	2 cut(s)	207, 341
AccII	CGCG	1 cut(s)	407
AciI	CCGC	8 cut(s)	5, 18, 108, 211, 294, 303, 306, 422
AclWI	GGATC	4 cut(s)	118, 118, 131, 139
AcyI	GRCGYC	1 cut(s)	318
AfaI	GTAC	1 cut(s)	324
AfiI	CCNNNNNNNGG	1 cut(s)	272
AflIII	ACRYGT	1 cut(s)	162
AgsI	TTSAA	1 cut(s)	36
AjnI	CCWGG	1 cut(s)	222
AluBI	AGCT	2 cut(s)	54, 473
AluI	AGCT	2 cut(s)	54, 473
Alw21I	GWGCWC	1 cut(s)	185
Alw26I	GTCTC	1 cut(s)	354
AlwI	GGATC	4 cut(s)	118, 118, 131, 139
AlwNI	CAGNNNCTG	1 cut(s)	401
Ama87I	CYCGRG	1 cut(s)	326
ApeKI	GCWGC	5 cut(s)	213, 448, 451, 454, 457
ArsI	GACNNNNNNTTYG	2 cut(s)	303, 335
AspLEI	GCGC	1 cut(s)	178
AvaI	CYCGRG	1 cut(s)	326
AxyI	CCTNAGG	1 cut(s)	270
BaeGI	GKGCMC	1 cut(s)	344
BamHI	GGATCC	1 cut(s)	123
BanI	GGYRCC	2 cut(s)	207, 341
Bbv12I	GWGCWC	1 cut(s)	185
BbvI	GCAGC	5 cut(s)	225, 460, 463, 466, 469
BccI	CCATC	2 cut(s)	107, 350
BciT130I	CCWGG	1 cut(s)	224
BcoDI	GTCTC	1 cut(s)	354
BfaI	CTAG	1 cut(s)	484
Bme1390I	CCNGG	1 cut(s)	224
BmeT110I	CYCGRG	1 cut(s)	326
BmiI	GGNNCC	4 cut(s)	125, 209, 298, 343
BmrFI	CCNGG	1 cut(s)	224
BmrI	ACTGGG	1 cut(s)	56
BmuI	ACTGGG	1 cut(s)	56
BpmI	CTGGAG	1 cut(s)	283
BpuEI	CTTGAG	1 cut(s)	32
BsaHI	GRCGYC	1 cut(s)	318
BsaJI	CCNNGG	2 cut(s)	222, 249
BsaWI	WCCGGW	1 cut(s)	126
BsaXI	ACNNNNNCTCC	2 cut(s)	357, 387
Bsc4I	CCNNNNNNNGG	1 cut(s)	272
Bse1I	ACTGG	2 cut(s)	62, 202
Bse21I	CCTNAGG	1 cut(s)	270
BseBI	CCWGG	1 cut(s)	224
BseDI	CCNNGG	2 cut(s)	222, 249
BseGI	GGATG	1 cut(s)	81
BseLI	CCNNNNNNNGG	1 cut(s)	272
BseMII	CTCAG	1 cut(s)	284
BseNI	ACTGG	2 cut(s)	62, 202
BseRI	GAGGAG	4 cut(s)	381, 384, 440, 458
BseSI	GKGCMC	1 cut(s)	344
BseXI	GCAGC	5 cut(s)	225, 460, 463, 466, 469
Bsh1236I	CGCG	1 cut(s)	407
BshNI	GGYRCC	2 cut(s)	207, 341
BsiHKAI	GWGCWC	1 cut(s)	185
BsiHKCI	CYCGRG	1 cut(s)	326
BsiSI	CCGG	2 cut(s)	105, 127
BslFI	GGGAC	1 cut(s)	205
BslI	CCNNNNNNNGG	1 cut(s)	272
BsmAI	GTCTC	1 cut(s)	354
BsmBI	CGTCTC	1 cut(s)	354
BsmFI	GGGAC	1 cut(s)	205
BsoBI	CYCGRG	1 cut(s)	326
Bsp1286I	GDGCHC	2 cut(s)	185, 344
Bsp143I	GATC	3 cut(s)	110, 123, 144
BspACI	CCGC	8 cut(s)	5, 18, 108, 211, 294, 303, 306, 422
BspCNI	CTCAG	1 cut(s)	283
BspFNI	CGCG	1 cut(s)	407
BspLI	GGNNCC	4 cut(s)	125, 209, 298, 343
BspPI	GGATC	4 cut(s)	118, 118, 131, 139
BspQI	GCTCTTC	1 cut(s)	463
BspT107I	GGYRCC	2 cut(s)	207, 341
BsrI	ACTGG	2 cut(s)	62, 202
BssECI	CCNNGG	2 cut(s)	222, 249
BssMI	GATC	3 cut(s)	110, 123, 144
BssNI	GRCGYC	1 cut(s)	318
Bst2UI	CCWGG	1 cut(s)	224
Bst4CI	ACNGT	1 cut(s)	346
Bst6I	CTCTTC	2 cut(s)	271, 463
BstACI	GRCGYC	1 cut(s)	318
BstC8I	GCNNGC	1 cut(s)	475
BstDEI	CTNAG	1 cut(s)	270
BstF5I	GGATG	1 cut(s)	81
BstFNI	CGCG	1 cut(s)	407
BstHHI	GCGC	1 cut(s)	178
BstKTI	GATC	3 cut(s)	113, 126, 147
BstMAI	GTCTC	1 cut(s)	354
BstMBI	GATC	3 cut(s)	110, 123, 144
BstMWI	GCNNNNNNNGC	6 cut(s)	207, 300, 303, 312, 454, 457
BstNI	CCWGG	1 cut(s)	224
BstNSI	RCATGY	1 cut(s)	166
BstSCI	CCNGG	1 cut(s)	222
BstSLI	GKGCMC	1 cut(s)	344
BstUI	CGCG	1 cut(s)	407
BstV1I	GCAGC	5 cut(s)	225, 460, 463, 466, 469
BstX2I	RGATCY	3 cut(s)	110, 123, 144
BstYI	RGATCY	3 cut(s)	110, 123, 144
Bsu36I	CCTNAGG	1 cut(s)	270
BtsCI	GGATG	1 cut(s)	81
BtsI	GCAGTG	1 cut(s)	185
BtsIMutI	CAGTG	2 cut(s)	185, 209
Cac8I	GCNNGC	1 cut(s)	475
CaiI	CAGNNNCTG	1 cut(s)	401
CfoI	GCGC	1 cut(s)	178
CseI	GACGC	2 cut(s)	407, 413
Csp6I	GTAC	1 cut(s)	323
CviAII	CATG	1 cut(s)	163
CviJI	RGCY	6 cut(s)	32, 54, 254, 297, 332, 473
CviKI_1	RGCY	6 cut(s)	32, 54, 254, 297, 332, 473
CviQI	GTAC	1 cut(s)	323
DdeI	CTNAG	1 cut(s)	270
DpnI	GATC	3 cut(s)	112, 125, 146
DpnII	GATC	3 cut(s)	110, 123, 144
Eam1104I	CTCTTC	2 cut(s)	271, 463
EarI	CTCTTC	2 cut(s)	271, 463
EciI	GGCGGA	1 cut(s)	123
Eco81I	CCTNAGG	1 cut(s)	270
Eco88I	CYCGRG	1 cut(s)	326
EcoRII	CCWGG	1 cut(s)	222
Esp3I	CGTCTC	1 cut(s)	354
FaeI	CATG	1 cut(s)	166
FaiI	YATR	1 cut(s)	164
FaqI	GGGAC	1 cut(s)	205
FatI	CATG	1 cut(s)	162
FokI	GGATG	1 cut(s)	68
FspBI	CTAG	1 cut(s)	484
GlaI	GCGC	1 cut(s)	177
GsuI	CTGGAG	1 cut(s)	283
HapII	CCGG	2 cut(s)	105, 127
HgaI	GACGC	2 cut(s)	407, 413
HhaI	GCGC	1 cut(s)	178
Hin1I	GRCGYC	1 cut(s)	318
Hin1II	CATG	1 cut(s)	166
Hin6I	GCGC	1 cut(s)	176
HinP1I	GCGC	1 cut(s)	176
HinfI	GANTC	4 cut(s)	118, 139, 218, 288
HpaII	CCGG	2 cut(s)	105, 127
Hpy188I	TCNGA	5 cut(s)	123, 144, 250, 355, 434
Hpy188III	TCNNGA	1 cut(s)	49
Hpy99I	CGWCG	4 cut(s)	288, 320, 323, 350
HpyAV	CCTTC	2 cut(s)	305, 380
HpyCH4III	ACNGT	1 cut(s)	346
HpyCH4IV	ACGT	1 cut(s)	318
HpyCH4V	TGCA	1 cut(s)	395
HpyF10VI	GCNNNNNNNGC	6 cut(s)	207, 300, 303, 312, 454, 457
HpyF3I	CTNAG	1 cut(s)	270
HpySE526I	ACGT	1 cut(s)	318
Hsp92I	GRCGYC	1 cut(s)	318
Hsp92II	CATG	1 cut(s)	166
HspAI	GCGC	1 cut(s)	176
Kzo9I	GATC	3 cut(s)	110, 123, 144
LguI	GCTCTTC	1 cut(s)	463
LmnI	GCTCC	3 cut(s)	188, 302, 445
Lsp1109I	GCAGC	5 cut(s)	225, 460, 463, 466, 469
MaeI	CTAG	1 cut(s)	484
MaeII	ACGT	1 cut(s)	318
MalI	GATC	3 cut(s)	112, 125, 146
MboI	GATC	3 cut(s)	110, 123, 144
MboII	GAAGA	3 cut(s)	288, 392, 480
MflI	RGATCY	3 cut(s)	110, 123, 144
MhlI	GDGCHC	2 cut(s)	185, 344
MlyI	GAGTC	2 cut(s)	227, 282
MmeI	TCCRAC	2 cut(s)	150, 412
MseI	TTAA	3 cut(s)	95, 135, 480
MspA1I	CMGCKG	1 cut(s)	303
MspI	CCGG	2 cut(s)	105, 127
MspR9I	CCNGG	1 cut(s)	224
MvaI	CCWGG	1 cut(s)	224
MvnI	CGCG	1 cut(s)	407
MwoI	GCNNNNNNNGC	6 cut(s)	207, 300, 303, 312, 454, 457
NdeII	GATC	3 cut(s)	110, 123, 144
NlaIII	CATG	1 cut(s)	166
NlaIV	GGNNCC	4 cut(s)	125, 209, 298, 343
NmeAIII	GCCGAG	1 cut(s)	270
NspI	RCATGY	1 cut(s)	166
PciI	ACATGT	1 cut(s)	162
PciSI	GCTCTTC	1 cut(s)	463
PfeI	GAWTC	2 cut(s)	118, 139
PleI	GAGTC	2 cut(s)	226, 282
PpsI	GAGTC	2 cut(s)	226, 282
PscI	ACATGT	1 cut(s)	162
Psp6I	CCWGG	1 cut(s)	222
PspGI	CCWGG	1 cut(s)	222
PspN4I	GGNNCC	4 cut(s)	125, 209, 298, 343
PstNI	CAGNNNCTG	1 cut(s)	401
PsuI	RGATCY	3 cut(s)	110, 123, 144
RsaI	GTAC	1 cut(s)	324
RsaNI	GTAC	1 cut(s)	323
SapI	GCTCTTC	1 cut(s)	463
SaqAI	TTAA	3 cut(s)	95, 135, 480
Sau3AI	GATC	3 cut(s)	110, 123, 144
SchI	GAGTC	2 cut(s)	227, 282
ScrFI	CCNGG	1 cut(s)	224
SduI	GDGCHC	2 cut(s)	185, 344
SetI	ASST	4 cut(s)	56, 321, 432, 475
SmlI	CTYRAG	1 cut(s)	47
SmoI	CTYRAG	1 cut(s)	47
SsiI	CCGC	8 cut(s)	5, 18, 108, 211, 294, 303, 306, 422
SspMI	CTAG	1 cut(s)	484
StyD4I	CCNGG	1 cut(s)	222
TaaI	ACNGT	1 cut(s)	346
TaiI	ACGT	1 cut(s)	321
TauI	GCSGC	5 cut(s)	8, 213, 297, 306, 309
TfiI	GAWTC	2 cut(s)	118, 139
Tru1I	TTAA	3 cut(s)	95, 135, 480
Tru9I	TTAA	3 cut(s)	95, 135, 480
TscAI	CASTG	2 cut(s)	185, 209
TseI	GCWGC	5 cut(s)	213, 448, 451, 454, 457
TspDTI	ATGAA	1 cut(s)	399
TspGWI	ACGGA	1 cut(s)	378
TspRI	CASTG	2 cut(s)	185, 209
XceI	RCATGY	1 cut(s)	166
XspI	CTAG	1 cut(s)	484
ZraI	GACGTC	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.