Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0011605

Physical Location & Seq

Genomic Coordinates Forward (+)

8162020 .. 8163737

Gene Structure 1718 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG101900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGTCGTCGGAAGCGCAGTGCTCCCAGAACCCCAAGTGCCGGTGGTGCCGCAGCGAGTCCCTCGACGACTTGTGCTTCCCCAAGTCCGAGGCTCTGCGATTGCCCCCTCAGATCACAACTCCGCTAGCAAATGTTCCTACTCGAAGACTTCATGCATCGCCAACAGCAGCAAGAACTGGCTACCAAACTAGGCATCGTTATTCTACCTTACGAAAGATTATTCTGTATATCCGATACACTGTGTCCGCACTGTATCATGTTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

88

Amino Acids

10.12

Weight (kDa)

9.87

Isoelectric Point (pI)

64.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011605)

Species	Orthologous Gene IDs
prunus_persica	Prupe.4G068400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0011991
rosa_laevigata	RLG00000001485 RLG00000003619 RLG00000031877
rosa_multiflora	Rmu_sc0004594.1_g000001 Rmu_sc0008676.1_g000020
rosa_roxburghii	Rroxscaffold_1G00064600
rosa_rugosa	Rorug03G0201200 Rorug04G0460300 Rorug05G0349100 Rorug05G0418600 Rorug06G0268400
rosa_samantha	Rh5AG092200 Rh5BG088000 Rh5CG101900 Rh5DG088600 Rh6BG151900 Rh6DG136100
rosa_wichuraiana	Rw5G008050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	45
AciI	CCGC	3 cut(s)	49, 122, 246
AfiI	CCNNNNNNNGG	1 cut(s)	39
Alw21I	GWGCWC	1 cut(s)	23
ApeKI	GCWGC	2 cut(s)	51, 167
AspLEI	GCGC	1 cut(s)	16
AsuNHI	GCTAGC	1 cut(s)	124
BanI	GGYRCC	1 cut(s)	45
BbsI	GAAGAC	1 cut(s)	151
Bbv12I	GWGCWC	1 cut(s)	23
BbvI	GCAGC	2 cut(s)	63, 179
BfaI	CTAG	2 cut(s)	125, 189
BisI	GCNGC	3 cut(s)	49, 52, 168
BlsI	GCNGC	3 cut(s)	50, 53, 169
BmiI	GGNNCC	1 cut(s)	47
BmsI	GCATC	2 cut(s)	164, 202
BmtI	GCTAGC	1 cut(s)	128
BpiI	GAAGAC	1 cut(s)	151
BsaJI	CCNNGG	1 cut(s)	87
Bsc4I	CCNNNNNNNGG	1 cut(s)	39
Bse118I	RCCGGY	1 cut(s)	39
Bse1I	ACTGG	1 cut(s)	181
BseDI	CCNNGG	1 cut(s)	87
BseLI	CCNNNNNNNGG	1 cut(s)	39
BseMII	CTCAG	1 cut(s)	122
BseNI	ACTGG	1 cut(s)	181
BseXI	GCAGC	2 cut(s)	63, 179
BshNI	GGYRCC	1 cut(s)	45
BsiHKAI	GWGCWC	1 cut(s)	23
BsiSI	CCGG	1 cut(s)	40
BslFI	GGGAC	1 cut(s)	43
BslI	CCNNNNNNNGG	1 cut(s)	39
BsmFI	GGGAC	1 cut(s)	43
Bsp1286I	GDGCHC	1 cut(s)	23
Bsp143I	GATC	1 cut(s)	111
BspACI	CCGC	3 cut(s)	49, 122, 246
BspCNI	CTCAG	1 cut(s)	121
BspLI	GGNNCC	1 cut(s)	47
BspOI	GCTAGC	1 cut(s)	128
BspT107I	GGYRCC	1 cut(s)	45
BsrFI	RCCGGY	1 cut(s)	39
BsrI	ACTGG	1 cut(s)	181
BssAI	RCCGGY	1 cut(s)	39
BssECI	CCNNGG	1 cut(s)	87
BssMI	GATC	1 cut(s)	111
Bst4CI	ACNGT	2 cut(s)	241, 252
BstC8I	GCNNGC	1 cut(s)	126
BstDEI	CTNAG	1 cut(s)	108
BstHHI	GCGC	1 cut(s)	16
BstKTI	GATC	1 cut(s)	114
BstMBI	GATC	1 cut(s)	111
BstMWI	GCNNNNNNNGC	1 cut(s)	45
BstV1I	GCAGC	2 cut(s)	63, 179
BstV2I	GAAGAC	1 cut(s)	151
BtgZI	GCGATG	1 cut(s)	141
BtsI	GCAGTG	1 cut(s)	23
BtsIMutI	CAGTG	3 cut(s)	23, 237, 248
Cac8I	GCNNGC	1 cut(s)	126
CfoI	GCGC	1 cut(s)	16
Cfr10I	RCCGGY	1 cut(s)	39
CviAII	CATG	2 cut(s)	152, 257
CviJI	RGCY	2 cut(s)	92, 180
CviKI_1	RGCY	2 cut(s)	92, 180
DdeI	CTNAG	1 cut(s)	108
DpnI	GATC	1 cut(s)	113
DpnII	GATC	1 cut(s)	111
EcoT22I	ATGCAT	1 cut(s)	157
FaeI	CATG	2 cut(s)	155, 260
FaiI	YATR	3 cut(s)	153, 228, 258
FaqI	GGGAC	1 cut(s)	43
FatI	CATG	2 cut(s)	151, 256
Fnu4HI	GCNGC	3 cut(s)	49, 52, 168
Fsp4HI	GCNGC	3 cut(s)	49, 52, 168
FspBI	CTAG	2 cut(s)	125, 189
GlaI	GCGC	1 cut(s)	15
GluI	GCNGC	3 cut(s)	49, 52, 168
HapII	CCGG	1 cut(s)	40
HhaI	GCGC	1 cut(s)	16
Hin1II	CATG	2 cut(s)	155, 260
Hin6I	GCGC	1 cut(s)	14
HinP1I	GCGC	1 cut(s)	14
HinfI	GANTC	1 cut(s)	56
HpaII	CCGG	1 cut(s)	40
Hpy188I	TCNGA	4 cut(s)	10, 88, 111, 233
Hpy99I	CGWCG	2 cut(s)	10, 68
HpyCH4III	ACNGT	2 cut(s)	241, 252
HpyCH4V	TGCA	1 cut(s)	155
HpyF10VI	GCNNNNNNNGC	1 cut(s)	45
HpyF3I	CTNAG	1 cut(s)	108
Hsp92II	CATG	2 cut(s)	155, 260
HspAI	GCGC	1 cut(s)	14
Kzo9I	GATC	1 cut(s)	111
LmnI	GCTCC	1 cut(s)	26
LpnPI	CCDG	3 cut(s)	38, 53, 162
Lsp1109I	GCAGC	2 cut(s)	63, 179
LweI	GCATC	2 cut(s)	164, 202
MaeI	CTAG	2 cut(s)	125, 189
MaeIII	GTNAC	1 cut(s)	259
MalI	GATC	1 cut(s)	113
MboI	GATC	1 cut(s)	111
MboII	GAAGA	1 cut(s)	156
MhlI	GDGCHC	1 cut(s)	23
MlyI	GAGTC	1 cut(s)	65
MnlI	CCTC	3 cut(s)	71, 82, 117
Mph1103I	ATGCAT	1 cut(s)	157
MseI	TTAA	1 cut(s)	265
MspI	CCGG	1 cut(s)	40
MwoI	GCNNNNNNNGC	1 cut(s)	45
NdeII	GATC	1 cut(s)	111
NheI	GCTAGC	1 cut(s)	124
NlaIII	CATG	2 cut(s)	155, 260
NlaIV	GGNNCC	1 cut(s)	47
NsiI	ATGCAT	1 cut(s)	157
PkrI	GCNGC	3 cut(s)	50, 53, 169
PleI	GAGTC	1 cut(s)	64
PpsI	GAGTC	1 cut(s)	64
PspN4I	GGNNCC	1 cut(s)	47
SaqAI	TTAA	1 cut(s)	265
SatI	GCNGC	3 cut(s)	49, 52, 168
Sau3AI	GATC	1 cut(s)	111
SchI	GAGTC	1 cut(s)	65
SduI	GDGCHC	1 cut(s)	23
SetI	ASST	1 cut(s)	209
SfaNI	GCATC	2 cut(s)	164, 202
SsiI	CCGC	3 cut(s)	49, 122, 246
SspMI	CTAG	2 cut(s)	125, 189
TaaI	ACNGT	2 cut(s)	241, 252
TaqI	TCGA	2 cut(s)	63, 142
TauI	GCSGC	1 cut(s)	51
Tru1I	TTAA	1 cut(s)	265
Tru9I	TTAA	1 cut(s)	265
TscAI	CASTG	3 cut(s)	23, 244, 255
TseI	GCWGC	2 cut(s)	51, 167
TspDTI	ATGAA	1 cut(s)	140
TspRI	CASTG	3 cut(s)	23, 244, 255
XspI	CTAG	2 cut(s)	125, 189
Zsp2I	ATGCAT	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.