Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008676.1

Orthogroup ID

OG0011605

Physical Location & Seq

Genomic Coordinates Reverse (-)

70637 .. 71404

Gene Structure 768 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008676.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

atggcggcaaccaccaccgccaagacttcggctttaactcccaaactcaagagcttcgccccagtcctcatgctcctcctcatccttgtcttatcaaccatctccagcggatctgcgaatcggatcaagttggttaagaatcagatccacagctgctgcggcatgtcatcggaagggcagtgctctcagaaccctaagtgtcggtggtgtcgcagtgagtccctggacgacatgtgcttccccaagtccgaggctttggaagagaacgacaacttggcagctgcggcggcggcgaaggcagcgttgtactcggggctgatgagggcatcgtcgcttccaacgcagacggaggaggagtcgaggaagaggaaggagttgcagacgctgcggcggttgaaggggaagcagaggaggtcagagaagcataggaacagcagcagcagtagtaaggaggaagagctggcattaactagttctttatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

160

Amino Acids

17.49

Weight (kDa)

9.48

Isoelectric Point (pI)

70.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011605)

Species	Orthologous Gene IDs
prunus_persica	Prupe.4G068400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0011991
rosa_laevigata	RLG00000001485 RLG00000003619 RLG00000031877
rosa_multiflora	Rmu_sc0004594.1_g000001 Rmu_sc0008676.1_g000020
rosa_roxburghii	Rroxscaffold_1G00064600
rosa_rugosa	Rorug03G0201200 Rorug04G0460300 Rorug05G0349100 Rorug05G0418600 Rorug06G0268400
rosa_samantha	Rh5AG092200 Rh5BG088000 Rh5CG101900 Rh5DG088600 Rh6BG151900 Rh6DG136100
rosa_wichuraiana	Rw5G008050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	9 cut(s)	5, 18, 108, 159, 284, 287, 290, 388, 391
AclWI	GGATC	3 cut(s)	118, 131, 139
AfaI	GTAC	1 cut(s)	308
AflIII	ACRYGT	1 cut(s)	231
AgsI	TTSAA	1 cut(s)	397
AhlI	ACTAGT	1 cut(s)	470
AjnI	CCWGG	1 cut(s)	222
AjuI	GAANNNNNNNTTGG	2 cut(s)	257, 289
AluBI	AGCT	4 cut(s)	54, 153, 281, 460
AluI	AGCT	4 cut(s)	54, 153, 281, 460
Alw21I	GWGCWC	1 cut(s)	185
AlwI	GGATC	3 cut(s)	118, 131, 139
AlwNI	CAGNNNCTG	2 cut(s)	156, 385
Ama87I	CYCGRG	1 cut(s)	310
ApeKI	GCWGC	8 cut(s)	153, 156, 278, 281, 299, 385, 435, 438
AvaI	CYCGRG	1 cut(s)	310
Bbv12I	GWGCWC	1 cut(s)	185
BbvI	GCAGC	8 cut(s)	140, 143, 268, 290, 311, 372, 447, 450
BccI	CCATC	1 cut(s)	107
BciT130I	CCWGG	1 cut(s)	224
BcuI	ACTAGT	1 cut(s)	470
BfaI	CTAG	1 cut(s)	471
Bme1390I	CCNGG	1 cut(s)	224
BmeT110I	CYCGRG	1 cut(s)	310
BmrFI	CCNGG	1 cut(s)	224
BmrI	ACTGGG	1 cut(s)	56
BmsI	GCATC	1 cut(s)	335
BmuI	ACTGGG	1 cut(s)	56
BpmI	CTGGAG	1 cut(s)	88
BpuEI	CTTGAG	1 cut(s)	32
BsaJI	CCNNGG	2 cut(s)	222, 249
BsaXI	ACNNNNNCTCC	2 cut(s)	341, 371
Bse1I	ACTGG	1 cut(s)	62
BseBI	CCWGG	1 cut(s)	224
BseDI	CCNNGG	2 cut(s)	222, 249
BseGI	GGATG	1 cut(s)	81
BseMII	CTCAG	1 cut(s)	200
BseNI	ACTGG	1 cut(s)	62
BseRI	GAGGAG	5 cut(s)	65, 68, 365, 368, 424
BseXI	GCAGC	8 cut(s)	140, 143, 268, 290, 311, 372, 447, 450
BsiHKAI	GWGCWC	1 cut(s)	185
BsiHKCI	CYCGRG	1 cut(s)	310
BslFI	GGGAC	1 cut(s)	205
BsmFI	GGGAC	1 cut(s)	205
BsoBI	CYCGRG	1 cut(s)	310
Bsp1286I	GDGCHC	1 cut(s)	185
Bsp143I	GATC	3 cut(s)	110, 123, 144
BspACI	CCGC	9 cut(s)	5, 18, 108, 159, 284, 287, 290, 388, 391
BspCNI	CTCAG	1 cut(s)	199
BspPI	GGATC	3 cut(s)	118, 131, 139
BspQI	GCTCTTC	1 cut(s)	450
BsrI	ACTGG	1 cut(s)	62
BssECI	CCNNGG	2 cut(s)	222, 249
BssMI	GATC	3 cut(s)	110, 123, 144
Bst2UI	CCWGG	1 cut(s)	224
Bst6I	CTCTTC	3 cut(s)	255, 359, 450
BstAPI	GCANNNNNTGC	1 cut(s)	385
BstC8I	GCNNGC	1 cut(s)	462
BstDEI	CTNAG	2 cut(s)	186, 195
BstF5I	GGATG	1 cut(s)	81
BstKTI	GATC	3 cut(s)	113, 126, 147
BstMBI	GATC	3 cut(s)	110, 123, 144
BstMWI	GCNNNNNNNGC	8 cut(s)	159, 284, 287, 290, 296, 299, 340, 385
BstNI	CCWGG	1 cut(s)	224
BstNSI	RCATGY	2 cut(s)	166, 235
BstSCI	CCNGG	1 cut(s)	222
BstV1I	GCAGC	8 cut(s)	140, 143, 268, 290, 311, 372, 447, 450
BstX2I	RGATCY	2 cut(s)	110, 144
BstYI	RGATCY	2 cut(s)	110, 144
BtsCI	GGATG	1 cut(s)	81
BtsI	GCAGTG	2 cut(s)	185, 220
BtsIMutI	CAGTG	2 cut(s)	185, 220
Cac8I	GCNNGC	1 cut(s)	462
CaiI	CAGNNNCTG	2 cut(s)	156, 385
CseI	GACGC	1 cut(s)	391
Csp6I	GTAC	1 cut(s)	307
CviAII	CATG	3 cut(s)	70, 163, 232
CviJI	RGCY	7 cut(s)	32, 54, 153, 254, 281, 316, 460
CviKI_1	RGCY	7 cut(s)	32, 54, 153, 254, 281, 316, 460
CviQI	GTAC	1 cut(s)	307
DdeI	CTNAG	2 cut(s)	186, 195
DpnI	GATC	3 cut(s)	112, 125, 146
DpnII	GATC	3 cut(s)	110, 123, 144
Eam1104I	CTCTTC	3 cut(s)	255, 359, 450
EarI	CTCTTC	3 cut(s)	255, 359, 450
Eco88I	CYCGRG	1 cut(s)	310
EcoRII	CCWGG	1 cut(s)	222
FaeI	CATG	3 cut(s)	73, 166, 235
FaiI	YATR	5 cut(s)	71, 164, 233, 426, 481
FaqI	GGGAC	1 cut(s)	205
FatI	CATG	3 cut(s)	69, 162, 231
FokI	GGATG	1 cut(s)	68
FspBI	CTAG	1 cut(s)	471
GsuI	CTGGAG	1 cut(s)	88
HgaI	GACGC	1 cut(s)	391
Hin1II	CATG	3 cut(s)	73, 166, 235
HinfI	GANTC	4 cut(s)	118, 139, 218, 356
Hpy188I	TCNGA	6 cut(s)	123, 144, 172, 189, 250, 418
Hpy188III	TCNNGA	1 cut(s)	49
Hpy99I	CGWCG	1 cut(s)	334
HpyAV	CCTTC	4 cut(s)	167, 289, 364, 391
HpyCH4V	TGCA	1 cut(s)	379
HpyF10VI	GCNNNNNNNGC	8 cut(s)	159, 284, 287, 290, 296, 299, 340, 385
HpyF3I	CTNAG	2 cut(s)	186, 195
Hsp92II	CATG	3 cut(s)	73, 166, 235
Kzo9I	GATC	3 cut(s)	110, 123, 144
LguI	GCTCTTC	1 cut(s)	450
LmnI	GCTCC	1 cut(s)	78
LpnPI	CCDG	5 cut(s)	75, 118, 209, 236, 446
Lsp1109I	GCAGC	8 cut(s)	140, 143, 268, 290, 311, 372, 447, 450
LweI	GCATC	1 cut(s)	335
MaeI	CTAG	1 cut(s)	471
MalI	GATC	3 cut(s)	112, 125, 146
MboI	GATC	3 cut(s)	110, 123, 144
MboII	GAAGA	3 cut(s)	272, 376, 467
MflI	RGATCY	2 cut(s)	110, 144
MhlI	GDGCHC	1 cut(s)	185
MlyI	GAGTC	2 cut(s)	227, 365
MmeI	TCCRAC	1 cut(s)	362
MseI	TTAA	3 cut(s)	35, 135, 467
MspA1I	CMGCKG	3 cut(s)	108, 153, 281
MspR9I	CCNGG	1 cut(s)	224
MvaI	CCWGG	1 cut(s)	224
MwoI	GCNNNNNNNGC	8 cut(s)	159, 284, 287, 290, 296, 299, 340, 385
NdeII	GATC	3 cut(s)	110, 123, 144
NlaIII	CATG	3 cut(s)	73, 166, 235
NspI	RCATGY	2 cut(s)	166, 235
PciI	ACATGT	1 cut(s)	231
PciSI	GCTCTTC	1 cut(s)	450
PfeI	GAWTC	2 cut(s)	118, 139
PleI	GAGTC	2 cut(s)	226, 364
PpsI	GAGTC	2 cut(s)	226, 364
PscI	ACATGT	1 cut(s)	231
Psp6I	CCWGG	1 cut(s)	222
PspGI	CCWGG	1 cut(s)	222
PstNI	CAGNNNCTG	2 cut(s)	156, 385
PsuI	RGATCY	2 cut(s)	110, 144
PvuII	CAGCTG	2 cut(s)	153, 281
RsaI	GTAC	1 cut(s)	308
RsaNI	GTAC	1 cut(s)	307
SapI	GCTCTTC	1 cut(s)	450
SaqAI	TTAA	3 cut(s)	35, 135, 467
Sau3AI	GATC	3 cut(s)	110, 123, 144
SchI	GAGTC	2 cut(s)	227, 365
ScrFI	CCNGG	1 cut(s)	224
SduI	GDGCHC	1 cut(s)	185
SetI	ASST	5 cut(s)	56, 155, 283, 416, 462
SfaNI	GCATC	1 cut(s)	335
SmlI	CTYRAG	1 cut(s)	47
SmoI	CTYRAG	1 cut(s)	47
SpeI	ACTAGT	1 cut(s)	470
SsiI	CCGC	9 cut(s)	5, 18, 108, 159, 284, 287, 290, 388, 391
SspMI	CTAG	1 cut(s)	471
StyD4I	CCNGG	1 cut(s)	222
TaqI	TCGA	1 cut(s)	359
TatI	WGTACW	1 cut(s)	306
TauI	GCSGC	6 cut(s)	8, 162, 287, 290, 293, 391
TfiI	GAWTC	2 cut(s)	118, 139
Tru1I	TTAA	3 cut(s)	35, 135, 467
Tru9I	TTAA	3 cut(s)	35, 135, 467
TscAI	CASTG	2 cut(s)	185, 220
TseI	GCWGC	8 cut(s)	153, 156, 278, 281, 299, 385, 435, 438
TspGWI	ACGGA	1 cut(s)	362
TspRI	CASTG	2 cut(s)	185, 220
XceI	RCATGY	2 cut(s)	166, 235
XspI	CTAG	1 cut(s)	471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.