Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004594.1

Orthogroup ID

OG0011605

Physical Location & Seq

Genomic Coordinates Forward (+)

1494 .. 2237

Gene Structure 744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004594.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

atggcggcaaccaccaccgccaagacttcggctttaactcccaaactcaagagcttcgccccagtcctcctgctcctcctcatccttgtcttatcaaccatctccaacggatctgcgaatcggatcaagttggttaagaatcagatccacatctgctgcaacatgtcgtcggaagggcagtgctctcagaaccctaagtgtcggtggtgtcgcagtgagtccctggacgacatgtgcttccccaagtccgaggctttggaagagaacgacaacttggcagctgcggcggcggcgtactcagggctgatgagggcgtcgtcgcttccaacgcagacggaggaggagtcgaggaagaggaaggagttgcaaacgctgcggcggttggaggcgaagcagaggaggtcagagaagcagaggaacagcagcagcagcagtaaggaggaagagctggcattaactagttcttcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

156

Amino Acids

17.18

Weight (kDa)

9.13

Isoelectric Point (pI)

75.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011605)

Species	Orthologous Gene IDs
prunus_persica	Prupe.4G068400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0011991
rosa_laevigata	RLG00000001485 RLG00000003619 RLG00000031877
rosa_multiflora	Rmu_sc0004594.1_g000001 Rmu_sc0008676.1_g000020
rosa_roxburghii	Rroxscaffold_1G00064600
rosa_rugosa	Rorug03G0201200 Rorug04G0460300 Rorug05G0349100 Rorug05G0418600 Rorug06G0268400
rosa_samantha	Rh5AG092200 Rh5BG088000 Rh5CG101900 Rh5DG088600 Rh6BG151900 Rh6DG136100
rosa_wichuraiana	Rw5G008050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	5, 18, 284, 287, 290, 376, 379
AclWI	GGATC	3 cut(s)	118, 131, 139
AcyI	GRCGYC	1 cut(s)	314
AfaI	GTAC	1 cut(s)	296
AflIII	ACRYGT	2 cut(s)	162, 231
AhlI	ACTAGT	1 cut(s)	458
AjnI	CCWGG	1 cut(s)	222
AjuI	GAANNNNNNNTTGG	2 cut(s)	257, 289
AluBI	AGCT	3 cut(s)	54, 281, 448
AluI	AGCT	3 cut(s)	54, 281, 448
Alw21I	GWGCWC	1 cut(s)	185
AlwI	GGATC	3 cut(s)	118, 131, 139
ApeKI	GCWGC	7 cut(s)	156, 278, 281, 373, 423, 426, 429
Bbv12I	GWGCWC	1 cut(s)	185
BbvI	GCAGC	7 cut(s)	143, 268, 290, 360, 435, 438, 441
BccI	CCATC	1 cut(s)	107
BciT130I	CCWGG	1 cut(s)	224
BcuI	ACTAGT	1 cut(s)	458
BfaI	CTAG	1 cut(s)	459
Bme1390I	CCNGG	1 cut(s)	224
BmrFI	CCNGG	1 cut(s)	224
BmrI	ACTGGG	1 cut(s)	56
BmuI	ACTGGG	1 cut(s)	56
BpuEI	CTTGAG	1 cut(s)	32
BsaBI	GATNNNNATC	1 cut(s)	149
BsaHI	GRCGYC	1 cut(s)	314
BsaJI	CCNNGG	2 cut(s)	222, 249
BsaXI	ACNNNNNCTCC	2 cut(s)	329, 359
Bse1I	ACTGG	1 cut(s)	62
Bse8I	GATNNNNATC	1 cut(s)	149
BseBI	CCWGG	1 cut(s)	224
BseDI	CCNNGG	2 cut(s)	222, 249
BseGI	GGATG	1 cut(s)	81
BseJI	GATNNNNATC	1 cut(s)	149
BseMII	CTCAG	2 cut(s)	200, 312
BseNI	ACTGG	1 cut(s)	62
BseRI	GAGGAG	5 cut(s)	65, 68, 353, 356, 412
BseXI	GCAGC	7 cut(s)	143, 268, 290, 360, 435, 438, 441
BsiHKAI	GWGCWC	1 cut(s)	185
BslFI	GGGAC	1 cut(s)	205
BsmFI	GGGAC	1 cut(s)	205
Bsp1286I	GDGCHC	1 cut(s)	185
Bsp143I	GATC	3 cut(s)	110, 123, 144
BspACI	CCGC	7 cut(s)	5, 18, 284, 287, 290, 376, 379
BspCNI	CTCAG	2 cut(s)	199, 311
BspHI	TCATGA	1 cut(s)	467
BspPI	GGATC	3 cut(s)	118, 131, 139
BspQI	GCTCTTC	1 cut(s)	438
BsrI	ACTGG	1 cut(s)	62
BssECI	CCNNGG	2 cut(s)	222, 249
BssMI	GATC	3 cut(s)	110, 123, 144
BssNI	GRCGYC	1 cut(s)	314
Bst2UI	CCWGG	1 cut(s)	224
Bst6I	CTCTTC	3 cut(s)	255, 347, 438
BstACI	GRCGYC	1 cut(s)	314
BstAPI	GCANNNNNTGC	1 cut(s)	373
BstC8I	GCNNGC	1 cut(s)	450
BstDEI	CTNAG	3 cut(s)	186, 195, 298
BstF5I	GGATG	1 cut(s)	81
BstKTI	GATC	3 cut(s)	113, 126, 147
BstMBI	GATC	3 cut(s)	110, 123, 144
BstMWI	GCNNNNNNNGC	6 cut(s)	284, 287, 290, 328, 373, 429
BstNI	CCWGG	1 cut(s)	224
BstNSI	RCATGY	2 cut(s)	166, 235
BstSCI	CCNGG	1 cut(s)	222
BstV1I	GCAGC	7 cut(s)	143, 268, 290, 360, 435, 438, 441
BstX2I	RGATCY	2 cut(s)	110, 144
BstYI	RGATCY	2 cut(s)	110, 144
BtsCI	GGATG	1 cut(s)	81
BtsI	GCAGTG	2 cut(s)	185, 220
BtsIMutI	CAGTG	2 cut(s)	185, 220
Cac8I	GCNNGC	1 cut(s)	450
CciI	TCATGA	1 cut(s)	467
CseI	GACGC	1 cut(s)	303
Csp6I	GTAC	1 cut(s)	295
CviAII	CATG	3 cut(s)	163, 232, 468
CviJI	RGCY	6 cut(s)	32, 54, 254, 281, 304, 448
CviKI_1	RGCY	6 cut(s)	32, 54, 254, 281, 304, 448
CviQI	GTAC	1 cut(s)	295
DdeI	CTNAG	3 cut(s)	186, 195, 298
DpnI	GATC	3 cut(s)	112, 125, 146
DpnII	GATC	3 cut(s)	110, 123, 144
Eam1104I	CTCTTC	3 cut(s)	255, 347, 438
EarI	CTCTTC	3 cut(s)	255, 347, 438
EcoRII	CCWGG	1 cut(s)	222
FaeI	CATG	3 cut(s)	166, 235, 471
FaiI	YATR	3 cut(s)	164, 233, 469
FaqI	GGGAC	1 cut(s)	205
FatI	CATG	3 cut(s)	162, 231, 467
FokI	GGATG	1 cut(s)	68
FspBI	CTAG	1 cut(s)	459
HgaI	GACGC	1 cut(s)	303
Hin1I	GRCGYC	1 cut(s)	314
Hin1II	CATG	3 cut(s)	166, 235, 471
HinfI	GANTC	4 cut(s)	118, 139, 218, 344
Hpy188I	TCNGA	6 cut(s)	123, 144, 172, 189, 250, 406
Hpy188III	TCNNGA	2 cut(s)	49, 468
Hpy99I	CGWCG	3 cut(s)	172, 319, 322
HpyAV	CCTTC	2 cut(s)	167, 352
HpyCH4V	TGCA	2 cut(s)	159, 367
HpyF10VI	GCNNNNNNNGC	6 cut(s)	284, 287, 290, 328, 373, 429
HpyF3I	CTNAG	3 cut(s)	186, 195, 298
Hsp92I	GRCGYC	1 cut(s)	314
Hsp92II	CATG	3 cut(s)	166, 235, 471
Kzo9I	GATC	3 cut(s)	110, 123, 144
LguI	GCTCTTC	1 cut(s)	438
LmnI	GCTCC	1 cut(s)	78
LpnPI	CCDG	6 cut(s)	75, 83, 209, 236, 285, 434
Lsp1109I	GCAGC	7 cut(s)	143, 268, 290, 360, 435, 438, 441
MaeI	CTAG	1 cut(s)	459
MalI	GATC	3 cut(s)	112, 125, 146
MboI	GATC	3 cut(s)	110, 123, 144
MboII	GAAGA	4 cut(s)	272, 364, 455, 456
MflI	RGATCY	2 cut(s)	110, 144
MhlI	GDGCHC	1 cut(s)	185
MlyI	GAGTC	2 cut(s)	227, 353
MmeI	TCCRAC	4 cut(s)	129, 150, 350, 363
MseI	TTAA	3 cut(s)	35, 135, 455
MspA1I	CMGCKG	1 cut(s)	281
MspR9I	CCNGG	1 cut(s)	224
MvaI	CCWGG	1 cut(s)	224
MwoI	GCNNNNNNNGC	6 cut(s)	284, 287, 290, 328, 373, 429
NdeII	GATC	3 cut(s)	110, 123, 144
NlaIII	CATG	3 cut(s)	166, 235, 471
NspI	RCATGY	2 cut(s)	166, 235
PagI	TCATGA	1 cut(s)	467
PciI	ACATGT	2 cut(s)	162, 231
PciSI	GCTCTTC	1 cut(s)	438
PfeI	GAWTC	2 cut(s)	118, 139
PleI	GAGTC	2 cut(s)	226, 352
PpsI	GAGTC	2 cut(s)	226, 352
PscI	ACATGT	2 cut(s)	162, 231
Psp6I	CCWGG	1 cut(s)	222
PspGI	CCWGG	1 cut(s)	222
PsuI	RGATCY	2 cut(s)	110, 144
PvuII	CAGCTG	1 cut(s)	281
RsaI	GTAC	1 cut(s)	296
RsaNI	GTAC	1 cut(s)	295
SapI	GCTCTTC	1 cut(s)	438
SaqAI	TTAA	3 cut(s)	35, 135, 455
Sau3AI	GATC	3 cut(s)	110, 123, 144
SchI	GAGTC	2 cut(s)	227, 353
ScrFI	CCNGG	1 cut(s)	224
SduI	GDGCHC	1 cut(s)	185
SetI	ASST	4 cut(s)	56, 283, 404, 450
SmlI	CTYRAG	1 cut(s)	47
SmoI	CTYRAG	1 cut(s)	47
SpeI	ACTAGT	1 cut(s)	458
SsiI	CCGC	7 cut(s)	5, 18, 284, 287, 290, 376, 379
SspMI	CTAG	1 cut(s)	459
StyD4I	CCNGG	1 cut(s)	222
TaqI	TCGA	1 cut(s)	347
TauI	GCSGC	5 cut(s)	8, 287, 290, 293, 379
TfiI	GAWTC	2 cut(s)	118, 139
Tru1I	TTAA	3 cut(s)	35, 135, 455
Tru9I	TTAA	3 cut(s)	35, 135, 455
TscAI	CASTG	2 cut(s)	185, 220
TseI	GCWGC	7 cut(s)	156, 278, 281, 373, 423, 426, 429
TspDTI	ATGAA	1 cut(s)	456
TspGWI	ACGGA	2 cut(s)	123, 350
TspRI	CASTG	2 cut(s)	185, 220
XceI	RCATGY	2 cut(s)	166, 235
XspI	CTAG	1 cut(s)	459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.