Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0011605

Physical Location & Seq

Genomic Coordinates Forward (+)

8326607 .. 8328317

Gene Structure 1711 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG092200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGCGGCAACCACCACCGCCAAGACTTCCACTTCAATTCCCAAACTCAAGAGCTTCGCCCCAGTCCACCTGCTCCTCCTCATCCTCGTCTTATCAACCTTCTCCGGCGGATCTGCGAATCGGATCCGGTTGGTTAAGAATCAGATCCCCAGCTGCTGCGACATGTCGTCGGAAGCGCAGTGCTCCCAGAACCCCAAGTGCCGGTGGTGCCGCAGCGAGTCCCTCGACGACTTGTGCTTCCCCAAGTCCGAGGCTCTGCGATTGCCCCCTCAGGTCTTCACTTGCAAATTGATCCGATTCAGCCAAAAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

104

Amino Acids

11.54

Weight (kDa)

9.46

Isoelectric Point (pI)

56.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011605)

Species	Orthologous Gene IDs
prunus_persica	Prupe.4G068400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0011991
rosa_laevigata	RLG00000001485 RLG00000003619 RLG00000031877
rosa_multiflora	Rmu_sc0004594.1_g000001 Rmu_sc0008676.1_g000020
rosa_roxburghii	Rroxscaffold_1G00064600
rosa_rugosa	Rorug03G0201200 Rorug04G0460300 Rorug05G0349100 Rorug05G0418600 Rorug06G0268400
rosa_samantha	Rh5AG092200 Rh5BG088000 Rh5CG101900 Rh5DG088600 Rh6BG151900 Rh6DG136100
rosa_wichuraiana	Rw5G008050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	78
Acc36I	ACCTGC	1 cut(s)	78
AccB1I	GGYRCC	1 cut(s)	207
AciI	CCGC	4 cut(s)	5, 18, 108, 211
AclWI	GGATC	5 cut(s)	118, 118, 131, 139, 286
AcsI	RAATTY	1 cut(s)	308
AfiI	CCNNNNNNNGG	1 cut(s)	201
AflIII	ACRYGT	1 cut(s)	162
AgsI	TTSAA	1 cut(s)	36
AhdI	GACNNNNNGTC	1 cut(s)	166
AluBI	AGCT	2 cut(s)	54, 153
AluI	AGCT	2 cut(s)	54, 153
Alw21I	GWGCWC	1 cut(s)	185
AlwI	GGATC	5 cut(s)	118, 118, 131, 139, 286
AlwNI	CAGNNNCTG	1 cut(s)	156
ApeKI	GCWGC	3 cut(s)	153, 156, 213
ApoI	RAATTY	1 cut(s)	308
AspLEI	GCGC	1 cut(s)	178
AxyI	CCTNAGG	1 cut(s)	270
BamHI	GGATCC	1 cut(s)	123
BanI	GGYRCC	1 cut(s)	207
BbsI	GAAGAC	1 cut(s)	268
Bbv12I	GWGCWC	1 cut(s)	185
BbvI	GCAGC	3 cut(s)	140, 143, 225
BfuAI	ACCTGC	1 cut(s)	78
BisI	GCNGC	5 cut(s)	6, 154, 157, 211, 214
BlsI	GCNGC	5 cut(s)	7, 155, 158, 212, 215
BmeRI	GACNNNNNGTC	1 cut(s)	166
BmiI	GGNNCC	2 cut(s)	125, 209
BmrI	ACTGGG	1 cut(s)	56
BmuI	ACTGGG	1 cut(s)	56
BpiI	GAAGAC	1 cut(s)	268
BpuEI	CTTGAG	1 cut(s)	32
BsaJI	CCNNGG	1 cut(s)	249
BsaWI	WCCGGW	1 cut(s)	126
Bsc4I	CCNNNNNNNGG	1 cut(s)	201
Bse118I	RCCGGY	1 cut(s)	201
Bse1I	ACTGG	1 cut(s)	62
Bse21I	CCTNAGG	1 cut(s)	270
BseDI	CCNNGG	1 cut(s)	249
BseGI	GGATG	1 cut(s)	81
BseLI	CCNNNNNNNGG	1 cut(s)	201
BseMII	CTCAG	1 cut(s)	284
BseNI	ACTGG	1 cut(s)	62
BseRI	GAGGAG	2 cut(s)	65, 68
BseXI	GCAGC	3 cut(s)	140, 143, 225
BseYI	CCCAGC	1 cut(s)	149
BshNI	GGYRCC	1 cut(s)	207
BsiHKAI	GWGCWC	1 cut(s)	185
BsiSI	CCGG	3 cut(s)	105, 127, 202
BslFI	GGGAC	1 cut(s)	205
BslI	CCNNNNNNNGG	1 cut(s)	201
BsmFI	GGGAC	1 cut(s)	205
Bsp1286I	GDGCHC	1 cut(s)	185
Bsp143I	GATC	4 cut(s)	110, 123, 144, 291
BspACI	CCGC	4 cut(s)	5, 18, 108, 211
BspCNI	CTCAG	1 cut(s)	283
BspLI	GGNNCC	2 cut(s)	125, 209
BspMI	ACCTGC	1 cut(s)	78
BspPI	GGATC	5 cut(s)	118, 118, 131, 139, 286
BspT107I	GGYRCC	1 cut(s)	207
BsrFI	RCCGGY	1 cut(s)	201
BsrI	ACTGG	1 cut(s)	62
BssAI	RCCGGY	1 cut(s)	201
BssECI	CCNNGG	1 cut(s)	249
BssMI	GATC	4 cut(s)	110, 123, 144, 291
BstDEI	CTNAG	1 cut(s)	270
BstF5I	GGATG	1 cut(s)	81
BstHHI	GCGC	1 cut(s)	178
BstKTI	GATC	4 cut(s)	113, 126, 147, 294
BstMBI	GATC	4 cut(s)	110, 123, 144, 291
BstMWI	GCNNNNNNNGC	1 cut(s)	207
BstNSI	RCATGY	1 cut(s)	166
BstV1I	GCAGC	3 cut(s)	140, 143, 225
BstV2I	GAAGAC	1 cut(s)	268
BstX2I	RGATCY	3 cut(s)	110, 123, 144
BstYI	RGATCY	3 cut(s)	110, 123, 144
Bsu36I	CCTNAGG	1 cut(s)	270
BtsCI	GGATG	1 cut(s)	81
BtsI	GCAGTG	1 cut(s)	185
BtsIMutI	CAGTG	1 cut(s)	185
BveI	ACCTGC	1 cut(s)	78
CaiI	CAGNNNCTG	1 cut(s)	156
CfoI	GCGC	1 cut(s)	178
Cfr10I	RCCGGY	1 cut(s)	201
CviAII	CATG	1 cut(s)	163
CviJI	RGCY	4 cut(s)	54, 153, 254, 303
CviKI_1	RGCY	4 cut(s)	54, 153, 254, 303
DdeI	CTNAG	1 cut(s)	270
DpnI	GATC	4 cut(s)	112, 125, 146, 293
DpnII	GATC	4 cut(s)	110, 123, 144, 291
DriI	GACNNNNNGTC	1 cut(s)	166
Eam1105I	GACNNNNNGTC	1 cut(s)	166
EciI	GGCGGA	1 cut(s)	123
Eco81I	CCTNAGG	1 cut(s)	270
FaeI	CATG	1 cut(s)	166
FaiI	YATR	1 cut(s)	164
FaqI	GGGAC	1 cut(s)	205
FatI	CATG	1 cut(s)	162
Fnu4HI	GCNGC	5 cut(s)	6, 154, 157, 211, 214
FokI	GGATG	1 cut(s)	68
Fsp4HI	GCNGC	5 cut(s)	6, 154, 157, 211, 214
GlaI	GCGC	1 cut(s)	177
GluI	GCNGC	5 cut(s)	6, 154, 157, 211, 214
GsaI	CCCAGC	1 cut(s)	153
HapII	CCGG	3 cut(s)	105, 127, 202
HhaI	GCGC	1 cut(s)	178
Hin1II	CATG	1 cut(s)	166
Hin6I	GCGC	1 cut(s)	176
HinP1I	GCGC	1 cut(s)	176
HinfI	GANTC	4 cut(s)	118, 139, 218, 297
HpaII	CCGG	3 cut(s)	105, 127, 202
Hpy166II	GTNNAC	1 cut(s)	67
Hpy188I	TCNGA	5 cut(s)	123, 144, 172, 250, 296
Hpy188III	TCNNGA	1 cut(s)	49
Hpy8I	GTNNAC	1 cut(s)	67
Hpy99I	CGWCG	2 cut(s)	172, 230
HpyAV	CCTTC	1 cut(s)	109
HpyCH4V	TGCA	1 cut(s)	285
HpyF10VI	GCNNNNNNNGC	1 cut(s)	207
HpyF3I	CTNAG	1 cut(s)	270
Hsp92II	CATG	1 cut(s)	166
HspAI	GCGC	1 cut(s)	176
Kzo9I	GATC	4 cut(s)	110, 123, 144, 291
LmnI	GCTCC	2 cut(s)	78, 188
LpnPI	CCDG	8 cut(s)	75, 83, 118, 140, 163, 200, 215, 257
Lsp1109I	GCAGC	3 cut(s)	140, 143, 225
MalI	GATC	4 cut(s)	112, 125, 146, 293
MboI	GATC	4 cut(s)	110, 123, 144, 291
MboII	GAAGA	1 cut(s)	268
MflI	RGATCY	3 cut(s)	110, 123, 144
MhlI	GDGCHC	1 cut(s)	185
MluCI	AATT	3 cut(s)	36, 287, 308
MlyI	GAGTC	1 cut(s)	227
MmeI	TCCRAC	1 cut(s)	150
MnlI	CCTC	6 cut(s)	86, 89, 95, 233, 244, 279
MseI	TTAA	1 cut(s)	135
MspA1I	CMGCKG	1 cut(s)	153
MspI	CCGG	3 cut(s)	105, 127, 202
MwoI	GCNNNNNNNGC	1 cut(s)	207
NdeII	GATC	4 cut(s)	110, 123, 144, 291
NlaIII	CATG	1 cut(s)	166
NlaIV	GGNNCC	2 cut(s)	125, 209
NspI	RCATGY	1 cut(s)	166
PaqCI	CACCTGC	1 cut(s)	78
PciI	ACATGT	1 cut(s)	162
PfeI	GAWTC	3 cut(s)	118, 139, 297
PkrI	GCNGC	5 cut(s)	7, 155, 158, 212, 215
PleI	GAGTC	1 cut(s)	226
PpsI	GAGTC	1 cut(s)	226
PscI	ACATGT	1 cut(s)	162
PspFI	CCCAGC	1 cut(s)	149
PspN4I	GGNNCC	2 cut(s)	125, 209
PstNI	CAGNNNCTG	1 cut(s)	156
PsuI	RGATCY	3 cut(s)	110, 123, 144
PvuII	CAGCTG	1 cut(s)	153
SaqAI	TTAA	1 cut(s)	135
SatI	GCNGC	5 cut(s)	6, 154, 157, 211, 214
Sau3AI	GATC	4 cut(s)	110, 123, 144, 291
SchI	GAGTC	1 cut(s)	227
SduI	GDGCHC	1 cut(s)	185
SetI	ASST	5 cut(s)	56, 72, 101, 155, 276
SmlI	CTYRAG	1 cut(s)	47
SmoI	CTYRAG	1 cut(s)	47
Sse9I	AATT	3 cut(s)	36, 287, 308
SsiI	CCGC	4 cut(s)	5, 18, 108, 211
TaqI	TCGA	1 cut(s)	225
TasI	AATT	3 cut(s)	36, 287, 308
TauI	GCSGC	2 cut(s)	8, 213
TfiI	GAWTC	3 cut(s)	118, 139, 297
Tru1I	TTAA	1 cut(s)	135
Tru9I	TTAA	1 cut(s)	135
TscAI	CASTG	1 cut(s)	185
TseI	GCWGC	3 cut(s)	153, 156, 213
TspRI	CASTG	1 cut(s)	185
XapI	RAATTY	1 cut(s)	308
XceI	RCATGY	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.